-
1
-
-
33847035148
-
State-of-the-art tools for computational site of metabolism predictions: Comparative analysis, mechanistical insights, and future applications
-
Afzelius, L.; Arnby, C. H.; Broo, A.; Carlsson, L.; Isaksson, C.; Jurva, U.; Kjellander, B.; Kolmodin, K.; Nilsson, K.; Raubacher, F.; Weidolf, L. State-of-the-art tools for computational site of metabolism predictions: Comparative analysis, mechanistical insights, and future applications Drug Metab. Rev. 2007, 39, 61-86
-
(2007)
Drug Metab. Rev.
, vol.39
, pp. 61-86
-
-
Afzelius, L.1
Arnby, C.H.2
Broo, A.3
Carlsson, L.4
Isaksson, C.5
Jurva, U.6
Kjellander, B.7
Kolmodin, K.8
Nilsson, K.9
Raubacher, F.10
Weidolf, L.11
-
2
-
-
33745741280
-
Computational approaches for predicting CYP-related metabolism properties in the screening of new drugs
-
Crivori, P.; Poggesi, I. Computational approaches for predicting CYP-related metabolism properties in the screening of new drugs Eur. J. Med. Chem. 2006, 41, 795-808
-
(2006)
Eur. J. Med. Chem.
, vol.41
, pp. 795-808
-
-
Crivori, P.1
Poggesi, I.2
-
3
-
-
45949107967
-
Computational prediction of drug binding and rationalisation of selectivity towards cytochromes P450
-
Stjernschantz, E.; Vermeulen, N. P. E.; Oostenbrink, C. Computational prediction of drug binding and rationalisation of selectivity towards cytochromes P450 Expert Opin. Drug Metab. Toxicol. 2008, 4, 513-527
-
(2008)
Expert Opin. Drug Metab. Toxicol.
, vol.4
, pp. 513-527
-
-
Stjernschantz, E.1
Vermeulen, N.P.E.2
Oostenbrink, C.3
-
4
-
-
65549171233
-
CypScore: Quantitative Prediction of Reactivity toward Cytochromes P450 Based on Semiempirical Molecular Orbital Theory
-
Hennemann, M.; Friedl, A.; Lobell, M.; Keldenich, J.; Hillisch, A.; Clark, T.; Göller, A. H. CypScore: Quantitative Prediction of Reactivity toward Cytochromes P450 Based on Semiempirical Molecular Orbital Theory ChemMedChem 2009, 4, 657-669
-
(2009)
ChemMedChem
, vol.4
, pp. 657-669
-
-
Hennemann, M.1
Friedl, A.2
Lobell, M.3
Keldenich, J.4
Hillisch, A.5
Clark, T.6
Göller, A.H.7
-
5
-
-
0037431382
-
A Model for Predicting Likely Sites of CYP3A4-Mediated Metabolism on Drug-like Molecules
-
Singh, S. B.; Shen, L. Q.; Walker, M. J.; Sheridan, R. P. A Model for Predicting Likely Sites of CYP3A4-Mediated Metabolism on Drug-like Molecules J. Med. Chem. 2003, 46, 1330-1336
-
(2003)
J. Med. Chem.
, vol.46
, pp. 1330-1336
-
-
Singh, S.B.1
Shen, L.Q.2
Walker, M.J.3
Sheridan, R.P.4
-
6
-
-
34447515639
-
Empirical Regioselectivity Models for Human Cytochromes p450 3A4, 2D6, and 2C9
-
Sheridan, R. P.; Korzekwa, K. R.; Torres, R. A.; Walker, M. J. Empirical Regioselectivity Models for Human Cytochromes p450 3A4, 2D6, and 2C9 J. Med. Chem. 2007, 50, 3173-3184
-
(2007)
J. Med. Chem.
, vol.50
, pp. 3173-3184
-
-
Sheridan, R.P.1
Korzekwa, K.R.2
Torres, R.A.3
Walker, M.J.4
-
7
-
-
73449135498
-
Fast Prediction of Cytochrome P450 Mediated Drug Metabolism
-
Rydberg, P.; Vasanthanathan, P.; Oostenbrink, C.; Olsen, L. Fast Prediction of Cytochrome P450 Mediated Drug Metabolism ChemMedChem 2009, 4, 2070-2079
-
(2009)
ChemMedChem
, vol.4
, pp. 2070-2079
-
-
Rydberg, P.1
Vasanthanathan, P.2
Oostenbrink, C.3
Olsen, L.4
-
8
-
-
33750486521
-
Prediction of Activation Energies for Hydrogen Abstraction by Cytochrome P450
-
Olsen, L.; Rydberg, P.; Rod, T. H.; Ryde, U. Prediction of Activation Energies for Hydrogen Abstraction by Cytochrome P450 J. Med. Chem. 2006, 49, 6489-6499
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6489-6499
-
-
Olsen, L.1
Rydberg, P.2
Rod, T.H.3
Ryde, U.4
-
9
-
-
58149157800
-
Sulfoxide, Sulfur, and Nitrogen Oxidation and Dealkylation by Cytochrome P450
-
Rydberg, P.; Ryde, U.; Olsen, L. Sulfoxide, Sulfur, And Nitrogen Oxidation and Dealkylation by Cytochrome P450 J. Chem. Theory Comput. 2008, 4, 1369-1377
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 1369-1377
-
-
Rydberg, P.1
Ryde, U.2
Olsen, L.3
-
10
-
-
58149166592
-
Prediction of Activation Energies for Aromatic Oxidation by Cytochrome P450
-
Rydberg, P.; Ryde, U.; Olsen, L. Prediction of Activation Energies for Aromatic Oxidation by Cytochrome P450 J. Phys. Chem. A 2008, 112, 13058-13065
-
(2008)
J. Phys. Chem. A
, vol.112
, pp. 13058-13065
-
-
Rydberg, P.1
Ryde, U.2
Olsen, L.3
-
11
-
-
33748802003
-
Structural basis for ligand promiscuity in cytochrome P450 3A4
-
Ekroos, M.; Sjogren, T. Structural basis for ligand promiscuity in cytochrome P450 3A4 Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 13682-13687
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 13682-13687
-
-
Ekroos, M.1
Sjogren, T.2
-
12
-
-
38949204984
-
Cytochromes p450: A structure-based summary of biotransformations using representative substrates
-
Brown, C. M.; Reisfeld, B.; Mayeno, A. N. Cytochromes p450: A structure-based summary of biotransformations using representative substrates Drug Metab. Rev. 2008, 40, 1-100
-
(2008)
Drug Metab. Rev.
, vol.40
, pp. 1-100
-
-
Brown, C.M.1
Reisfeld, B.2
Mayeno, A.N.3
-
13
-
-
0036223831
-
Summary of information on human CYP enzymes: Human P450 metabolism data
-
Rendic, S. Summary of information on human CYP enzymes: Human P450 metabolism data Drug Metab. Rev. 2002, 34, 83-448
-
(2002)
Drug Metab. Rev.
, vol.34
, pp. 83-448
-
-
Rendic, S.1
-
14
-
-
77956643559
-
-
version 4.2.1; Optibrium Ltd.: Cambridge, United Kingdom.
-
StarDrop, version 4.2.1; Optibrium Ltd.: Cambridge, United Kingdom, 2009.
-
(2009)
StarDrop
-
-
-
15
-
-
45749087429
-
Regioselectivity Prediction of CYP1A2-Mediated Phase i Metabolism
-
Jung, J.; Kim, N. D.; Kim, S. Y.; Choi, I.; Cho, K. H.; Oh, W. S.; Kim, D. N.; No, K. T. Regioselectivity Prediction of CYP1A2-Mediated Phase I Metabolism J. Chem. Inf. Model. 2008, 48, 1074-1080
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 1074-1080
-
-
Jung, J.1
Kim, N.D.2
Kim, S.Y.3
Choi, I.4
Cho, K.H.5
Oh, W.S.6
Kim, D.N.7
No, K.T.8
-
16
-
-
33745135773
-
Recent developments of the Chemistry Development Kit (CDK) - An open-source Java library for chemo- and bioinformatics
-
Steinbeck, C.; Hoppe, C.; Kuhn, S.; Floris, M.; Guha, R.; Willighagen, E. L. Recent developments of the Chemistry Development Kit (CDK)-An open-source Java library for chemo- and bioinformatics Curr. Pharm. Des. 2006, 12, 2111-2120
-
(2006)
Curr. Pharm. Des.
, vol.12
, pp. 2111-2120
-
-
Steinbeck, C.1
Hoppe, C.2
Kuhn, S.3
Floris, M.4
Guha, R.5
Willighagen, E.L.6
-
17
-
-
0037361967
-
The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics
-
Steinbeck, C.; Han, Y. Q.; Kuhn, S.; Horlacher, O.; Luttmann, E.; Willighagen, E. The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics J. Chem. Inf. Comput. Sci. 2003, 43, 493-500
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 493-500
-
-
Steinbeck, C.1
Han, Y.Q.2
Kuhn, S.3
Horlacher, O.4
Luttmann, E.5
Willighagen, E.6
-
18
-
-
4243539377
-
Electronic-Structure Calculations on Workstation Computers-The Program System Turbomole
-
Ahlrichs, R.; Bar, M.; Haser, M.; Horn, H.; Kolmel, C. Electronic-Structure Calculations on Workstation Computers-The Program System Turbomole Chem. Phys. Lett. 1989, 162, 165-169
-
(1989)
Chem. Phys. Lett.
, vol.162
, pp. 165-169
-
-
Ahlrichs, R.1
Bar, M.2
Haser, M.3
Horn, H.4
Kolmel, C.5
-
19
-
-
4243553426
-
Density-Functional Exchange-Energy Approximation with Correct Asymptotic-Behavior
-
Becke, A. D. Density-Functional Exchange-Energy Approximation with Correct Asymptotic-Behavior Phys. Rev. A 1988, 38, 3098-3100
-
(1988)
Phys. Rev. A
, vol.38
, pp. 3098-3100
-
-
Becke, A.D.1
-
20
-
-
0345491105
-
Development of the Colle-Salvetti Correlation-Energy Formula into A Functional of the Electron-Density
-
Lee, C. T.; Yang, W. T.; Parr, R. G. Development of the Colle-Salvetti Correlation-Energy Formula Into A Functional of the Electron-Density Phys. Rev. B 1988, 37, 785-789
-
(1988)
Phys. Rev. B
, vol.37
, pp. 785-789
-
-
Lee, C.T.1
Yang, W.T.2
Parr, R.G.3
-
21
-
-
0000189651
-
Density-Functional Thermochemistry. 3. The Role of Exact Exchange
-
Becke, A. D. Density-Functional Thermochemistry. 3. The Role of Exact Exchange J. Chem. Phys. 1993, 98, 5648-5652
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 5648-5652
-
-
Becke, A.D.1
-
22
-
-
26344435738
-
Fully Optimized Contracted Gaussian-Basis Sets for Atoms Li to Kr
-
Schafer, A.; Horn, H.; Ahlrichs, R. Fully Optimized Contracted Gaussian-Basis Sets for Atoms Li to Kr J. Chem. Phys. 1992, 97, 2571-2577
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 2571-2577
-
-
Schafer, A.1
Horn, H.2
Ahlrichs, R.3
-
23
-
-
0347170005
-
Self-Consistent Molecular-Orbital Methods. 12. Further Extensions of Gaussian-Type Basis Sets for Use in Molecular-Orbital Studies of Organic-Molecules
-
Hehre, W. J.; Ditchfield, R.; Pople, J. A. Self-Consistent Molecular-Orbital Methods. 12. Further Extensions of Gaussian-Type Basis Sets for Use in Molecular-Orbital Studies of Organic-Molecules J. Chem. Phys. 1972, 56, 2257-2261
-
(1972)
J. Chem. Phys.
, vol.56
, pp. 2257-2261
-
-
Hehre, W.J.1
Ditchfield, R.2
Pople, J.A.3
-
24
-
-
33748545144
-
Influence of Polarization Functions on Molecular-Orbital Hydrogenation Energies
-
Hariharan, P. C.; Pople, J. A. Influence of Polarization Functions on Molecular-Orbital Hydrogenation Energies Theor. Chim. Acta 1973, 28, 213-222
-
(1973)
Theor. Chim. Acta
, vol.28
, pp. 213-222
-
-
Hariharan, P.C.1
Pople, J.A.2
-
25
-
-
33645949559
-
Self-Consistent Molecular-Orbital Methods. 23. A Polarization-Type Basis Set for 2Nd-Row Elements
-
Francl, M. M.; Pietro, W. J.; Hehre, W. J.; Binkley, J. S.; Gordon, M. S.; Defrees, D. J.; Pople, J. A. Self-Consistent Molecular-Orbital Methods. 23. A Polarization-Type Basis Set for 2Nd-Row Elements J. Chem. Phys. 1982, 77, 3654-3665
-
(1982)
J. Chem. Phys.
, vol.77
, pp. 3654-3665
-
-
Francl, M.M.1
Pietro, W.J.2
Hehre, W.J.3
Binkley, J.S.4
Gordon, M.S.5
Defrees, D.J.6
Pople, J.A.7
-
26
-
-
0141509423
-
Contracted Gaussian-Basis Sets for Molecular Calculations. 1. 2Nd Row Atoms, Z=11-18
-
Mclean, A. D.; Chandler, G. S. Contracted Gaussian-Basis Sets for Molecular Calculations. 1. 2Nd Row Atoms, Z=11-18 J. Chem. Phys. 1980, 72, 5639-5648
-
(1980)
J. Chem. Phys.
, vol.72
, pp. 5639-5648
-
-
McLean, A.D.1
Chandler, G.S.2
-
27
-
-
26844534384
-
Self-Consistent Molecular-Orbital Methods. 20. Basis Set for Correlated Wave-Functions
-
Krishnan, R.; Binkley, J. S.; Seeger, R.; Pople, J. A. Self-Consistent Molecular-Orbital Methods. 20. Basis Set for Correlated Wave-Functions J. Chem. Phys. 1980, 72, 650-654
-
(1980)
J. Chem. Phys.
, vol.72
, pp. 650-654
-
-
Krishnan, R.1
Binkley, J.S.2
Seeger, R.3
Pople, J.A.4
-
28
-
-
33747201345
-
The reaction mechanism of iron and manganese superoxide dismutases studied by theoretical calculations
-
Rulisek, L.; Jensen, K. P.; Lundgren, K.; Ryde, U. The reaction mechanism of iron and manganese superoxide dismutases studied by theoretical calculations J. Comput. Chem. 2006, 27, 1398-1414
-
(2006)
J. Comput. Chem.
, vol.27
, pp. 1398-1414
-
-
Rulisek, L.1
Jensen, K.P.2
Lundgren, K.3
Ryde, U.4
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