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77953872343
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Allen, D.; Ameriks, M. K.; Axe, F. U.; Burdett, M.; Cai, H.; Choong, I.; Edwards, J. P.; Lew, W.; Meduna, S. P. PCT Int. Appl. WO2008100620A2, 2008.
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15
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46849089254
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For recent reviews on fragment-based drug discovery, see:
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For recent reviews on fragment-based drug discovery, see:. Congreve M., Chessari G., Tisi D., and Woodhead A.J. J. Med. Chem. 51 (2008) 3661
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Jahnke, W., Erlanson, D. A., Eds. Fragment-Based Approaches in Drug Discovery. In Methods and Principles in Medicinal Chemistry, Mannhold, R., Kubinyi, H., Folkers, G., Eds.; 2006; 34, Wiley-VCH: Weinheim, Germany.
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17
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27644555726
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Fragment-based screening has been utilized to identify CatS inhibitors:
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Fragment-based screening has been utilized to identify CatS inhibitors:. Wood W.J., Patterson A.W., Tsuruoka H., Jain R.K., and Ellman J.A. J. Am. Chem. Soc. 127 (2005) 15521
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Ellman, J.A.5
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18
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12344326695
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The term Tethering is a service mark of Sunesis Pharmaceuticals Inc. for its fragment-based drug discovery:
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The term Tethering is a service mark of Sunesis Pharmaceuticals Inc. for its fragment-based drug discovery:. Oslob J.D., and Erlanson D.A. Drug Discovery Today 3 (2004) 143
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19
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0034662911
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Erlanson D.A., Braisted A.C., Raphael D.R., Randal M., Stroud R.M., Gordon E.M., and Wells J.A. Proc. Natl. Acad. Sci. U.S.A. 97 (2000) 9367
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Erlanson, D.A.1
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Wells, J.A.7
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20
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0036006271
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Turkenberg J.P., Lamers M.B.A.C., Brzozowski A.M., Wright L.M., Hubbard R.E., Sturt S.L., and Williams D.H. Acta Crystallogr., Sect. D: Biol. Crystallogr. D58 (2002) 451
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Turkenberg, J.P.1
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Sturt, S.L.6
Williams, D.H.7
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21
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77953871674
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note
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CatS cysteine mutants were expressed in SF9 cells as histidine-tagged proteins. Following purification over a Ni-NTA column, the CatS mutants were processed by 0.4 mg/mL pepsin, 100 mM NaOAc, pH 4.5, 5 mM DTT, 2.5 mM EDTA for 2 h at 40 °C. Pepsin enzymatic activity was stopped by raising the pH of the digestion to 7.5. Further purification was not required for screening, since the molecular weight of pepsin is larger than CatS and does not interfere with deconvolution of the fragment hits.
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22
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77953872504
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note
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Monophore screening conditions: 10-15 μM CatS mutant, 1 mM β-mercaptoethanol, 50 μM monophore (500 μM total in pools of 10), 50 mM Tris, pH 7.5. Monophore hits were identified by visual inspection of the deconvoluted masses of the monophore-protein conjugates and then ranked by fractional conjugation (the fraction of protein that remains conjugated to the discrete monophores in the presence of increasing concentrations of β-mercaptoethanol).
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23
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77953871882
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For a detailed description of the enzymatic assay, see: Allen, D.; Choong, I.; Lew, W. PCT Int. Appl. WO2008100622A2, 2008.
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For a detailed description of the enzymatic assay, see: Allen, D.; Choong, I.; Lew, W. PCT Int. Appl. WO2008100622A2, 2008.
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24
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77953872048
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note
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The monophore corresponding to adduct 3 was non-covalently docked to the structure of CatS in the area surrounding the E115C residue. Only binding conformations that placed the sulfur of the linker within 5 Å of the cysteine residue were retained. The monophores were then covalently attached as disulfides to the cysteine mutant and minimization was attempted to match each conformation from the non-covalent docking. The conformations were then scored and the lowest energy conformation for adduct 3 is shown in Figure 2.
-
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-
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31
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77953872388
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note
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-6 cm/s): compound 22, A-B = 1.3/B-A = 1.5; compound 27, A-B = 2.5/B-A = 2.9; compound 32, A-B = 0.6/B-A = 3.7.
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