메뉴 건너뛰기




Volumn , Issue SUPPL. 30, 2010, Pages

Analyzing shotgun proteomic data with patternlab for proteomics

Author keywords

label based proteomic analysis; label free proteomic analysis; shotgun proteomics

Indexed keywords

CLUSTER ANALYSIS; COMPUTER; DATA ANALYSIS SOFTWARE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEOMICS; REVIEW;

EID: 77953865293     PISSN: 19343396     EISSN: 1934340X     Source Type: Journal    
DOI: 10.1002/0471250953.bi1313s30     Document Type: Review
Times cited : (27)

References (12)
  • 2
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and, Hochberg, Y., 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B 57: 289-300.
    • (1995) J. R. Stat. Soc. Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 47949130351 scopus 로고    scopus 로고
    • Identifying differences in protein expression levels by spectral counting and feature selection
    • Carvalho, P.C., Hewel, J., Barbosa, V.C., and, Yates, J.R. III., 2008b. Identifying differences in protein expression levels by spectral counting and feature selection. Genet. Mol. Res. 7: 342-356.
    • (2008) Genet. Mol. Res. , vol.7 , pp. 342-356
    • Carvalho, P.C.1    Hewel, J.2    Barbosa, V.C.3    Yates III, J.R.4
  • 6
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J.K., McCormack, A., and, Yates, J.R. III., 1994. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5: 976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.2    Yates III, J.R.3
  • 7
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu, H., Sadygov, R.G., and, Yates, J.R. III., 2004. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 76: 4193-4201.
    • (2004) Anal. Chem. , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 8
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong, S.E., Blagoev, B., Kratchmarova, I., Kristensen, D.B., Steen, H., Pandey, A., and, Mann, M., 2002. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell Proteomics 1: 376-386.
    • (2002) Mol. Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 9
    • 41549117597 scopus 로고    scopus 로고
    • A quantitative analysis software tool for mass spectrometry-based proteomics
    • Park, S.K., Venable, J.D., Xu, T., and, Yates, J.R. III., 2008. A quantitative analysis software tool for mass spectrometry-based proteomics. Nat. Methods 5: 319-322.
    • (2008) Nat. Methods , vol.5 , pp. 319-322
    • Park, S.K.1    Venable, J.D.2    Xu, T.3    Yates III, J.R.4
  • 10
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D.N., Pappin, D.J., Creasy, D.M., and, Cottrell, J.S., 1999. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20: 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 11
    • 0036535357 scopus 로고    scopus 로고
    • Analysis of quantitative proteomic data generated via multidimensional protein identification technology
    • Washburn, M.P., Ulaszek, R., Deciu, C., Schieltz, D.M., and, Yates, J.R. III., 2002. Analysis of quantitative proteomic data generated via multidimensional protein identification technology. Anal. Chem. 74: 1650-1657.
    • (2002) Anal. Chem. , vol.74 , pp. 1650-1657
    • Washburn, M.P.1    Ulaszek, R.2    Deciu, C.3    Schieltz, D.M.4    Yates III, J.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.