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Volumn 6004 LNBI, Issue , 2010, Pages 8-18

Principles of bioimage informatics: Focus on machine learning of cell patterns

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATED MICROSCOPE; CELL PATTERNS; CELL SEGMENTATION; COMPUTATIONAL ANALYSIS; CONTROL SETTINGS; FLUORESCENCE MICROSCOPY IMAGES; INFORMATICS; MANUAL ANALYSIS; MANUAL ANNOTATION; ON-MACHINES; SUBCELLULAR LOCATION;

EID: 77953741233     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-13131-8_2     Document Type: Conference Paper
Times cited : (12)

References (50)
  • 2
    • 0036139314 scopus 로고    scopus 로고
    • A Neural Network Classifier Capable of Recognizing the Patterns of all Major Subcellular Structures in Fluorescence Microscope Images of HeLa Cells
    • Boland, M.V., Murphy, R.F.: A Neural Network Classifier Capable of Recognizing the Patterns of all Major Subcellular Structures in Fluorescence Microscope Images of HeLa Cells. Bioinformatics 17, 1213-1223 (2001)
    • (2001) Bioinformatics , vol.17 , pp. 1213-1223
    • Boland, M.V.1    Murphy, R.F.2
  • 5
    • 34047120829 scopus 로고    scopus 로고
    • Automatic recognition and annotation of gene expression patterns of fly embryos
    • DOI 10.1093/bioinformatics/btl680
    • Zhou, J., Peng, H.: Automatic recognition and annotation of gene expression patterns of fly embryos. Bioinformatics 23(5), 589-596 (2007) (Pubitemid 46522592)
    • (2007) Bioinformatics , vol.23 , Issue.5 , pp. 589-596
    • Zhou, J.1    Peng, H.2
  • 8
    • 15844414198 scopus 로고    scopus 로고
    • Objective Clustering of Proteins Based on Subcellular Location Patterns
    • Chen, X., Murphy, R.F.: Objective Clustering of Proteins Based on Subcellular Location Patterns. Journal Biomedical Biotechnology 2005(2), 87-95 (2005)
    • (2005) Journal Biomedical Biotechnology , vol.2 , pp. 87-95
    • Chen, X.1    Murphy, R.F.2
  • 9
    • 0036267185 scopus 로고    scopus 로고
    • Objective evaluation of differences in protein subcellular distribution
    • Roques, E., Murphy, R.: Objective evaluation of differences in protein subcellular distribution. Traffic 3, 61-65 (2002)
    • (2002) Traffic , vol.3 , pp. 61-65
    • Roques, E.1    Murphy, R.2
  • 10
    • 33749862379 scopus 로고    scopus 로고
    • Putting proteins on the map
    • Murphy, R.F.: Putting proteins on the map. Nature Biotechnology 24, 1223-1224 (2006)
    • (2006) Nature Biotechnology , vol.24 , pp. 1223-1224
    • Murphy, R.F.1
  • 12
    • 7044227922 scopus 로고    scopus 로고
    • Quantification of the Proliferation Index of Human Dermal Fibroblast Cultures with the ArrayScan High-Content Screening Reader
    • Gasparri, F., Mariani, M., Sola, F., Galvani, A.: Quantification of the Proliferation Index of Human Dermal Fibroblast Cultures with the ArrayScan High-Content Screening Reader. Journal of Biomolecular Screening 9(3), 232-243 (2004)
    • (2004) Journal of Biomolecular Screening , vol.9 , Issue.3 , pp. 232-243
    • Gasparri, F.1    Mariani, M.2    Sola, F.3    Galvani, A.4
  • 13
    • 33845760114 scopus 로고    scopus 로고
    • Automated Subcellular Location Determination and High Throughput Microscopy
    • Glory, E., Murphy, R.F.: Automated Subcellular Location Determination and High Throughput Microscopy. Developmental Cell 12(1), 7-16 (2007)
    • (2007) Developmental Cell , vol.12 , Issue.1 , pp. 7-16
    • Glory, E.1    Murphy, R.F.2
  • 15
    • 84948655958 scopus 로고    scopus 로고
    • Image Content-based Retrieval and Automated Interpretation of Fluorescence Microscope Images via the Protein Subcellular Location Image Database
    • Huang, K., Lin, J., Gajnak, J., Murphy, R.F.: Image Content-based Retrieval and Automated Interpretation of Fluorescence Microscope Images via the Protein Subcellular Location Image Database. In: IEEE Intl. Symp. Biomedical Imaging, pp. 325-328 (2002)
    • (2002) IEEE Intl. Symp. Biomedical Imaging , pp. 325-328
    • Huang, K.1    Lin, J.2    Gajnak, J.3    Murphy, R.F.4
  • 16
    • 33846252240 scopus 로고    scopus 로고
    • Genome-wide atlas of gene expression in the adult mouse brain
    • Lein, E., Hawrylycz, M., Ao, N.: Genome-wide atlas of gene expression in the adult mouse brain. Nature 445, 168-176 (2006)
    • (2006) Nature , vol.445 , pp. 168-176
    • Lein, E.1    Hawrylycz, M.2    Ao, N.3
  • 17
    • 36348951962 scopus 로고    scopus 로고
    • Systematic description of subcellular location for integration with proteomics databases and systems biology modeling
    • Murphy, R.F.: Systematic description of subcellular location for integration with proteomics databases and systems biology modeling. In: IEEE Intl. Symp. Biomedical Imaging, pp. 1052-1055 (2007)
    • (2007) IEEE Intl. Symp. Biomedical Imaging , pp. 1052-1055
    • Murphy, R.F.1
  • 18
    • 70349306111 scopus 로고    scopus 로고
    • Automatic segmentation of digital micrographs: A survey
    • Nattkemper, T.W.: Automatic segmentation of digital micrographs: A survey. Studies in health technology and informatics 107(2), 847-851 (2004)
    • (2004) Studies in Health Technology and Informatics , vol.107 , Issue.2 , pp. 847-851
    • Nattkemper, T.W.1
  • 19
    • 70449356941 scopus 로고    scopus 로고
    • Nuclear segmentation in microsope cell images: A hand-segmented dataset and comparison of algorithms
    • Coelho, L.P., Shariff, A., Murphy, R.F.: Nuclear segmentation in microsope cell images: A hand-segmented dataset and comparison of algorithms. In: IEEE Intl. Symp. Biomedical Imaging, pp. 518-521 (2009)
    • (2009) IEEE Intl. Symp. Biomedical Imaging , pp. 518-521
    • Coelho, L.P.1    Shariff, A.2    Murphy, R.F.3
  • 20
    • 33646698397 scopus 로고    scopus 로고
    • Voronoi-based segmentation of cells on image manifolds
    • Liu, Y., Jiang, T.-Z., Zhang, C. (eds.) , Springer, Heidelberg
    • Jones, T.R., Carpenter, A.E., Golland, P.: Voronoi-based segmentation of cells on image manifolds. In: Liu, Y., Jiang, T.-Z., Zhang, C. (eds.) CVBIA 2005. LNCS, vol.3765, pp. 535-543. Springer, Heidelberg (2005)
    • (2005) CVBIA 2005, LNCS , vol.3765 , pp. 535-543
    • Jones, T.R.1    Carpenter, A.E.2    Golland, P.3
  • 22
    • 0348134935 scopus 로고    scopus 로고
    • A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks
    • Lin, G., Adiga, U., Olson, K., Guzowski, J.F., Barnes, C.A., Roysam, B.: A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks. Cytometry Part A 56A(1), 23-36 (2003)
    • (2003) Cytometry Part A , vol.56 A , Issue.1 , pp. 23-36
    • Lin, G.1    Adiga, U.2    Olson, K.3    Guzowski, J.F.4    Barnes, C.A.5    Roysam, B.6
  • 23
    • 17144396362 scopus 로고    scopus 로고
    • Automated Classification of Subcellular Patterns in Multicell images without Segmentation into Single Cells
    • Huang, K., Murphy, R.F.: Automated Classification of Subcellular Patterns in Multicell images without Segmentation into Single Cells. In: IEEE Intl. Symp. Biomedical Imaging, pp. 1139-1142 (2004)
    • (2004) IEEE Intl. Symp. Biomedical Imaging , pp. 1139-1142
    • Huang, K.1    Murphy, R.F.2
  • 26
    • 0017131446 scopus 로고
    • Significance of cell shape in tissue architecture
    • Allen, T.D., Potten, C.S.: Significance of cell shape in tissue architecture. Nature 264(5586), 545-547 (1976)
    • (1976) Nature , vol.264 , Issue.5586 , pp. 545-547
    • Allen, T.D.1    Potten, C.S.2
  • 28
    • 34548515317 scopus 로고    scopus 로고
    • Comparison of quantitative methods for cell-shape analysis
    • Pincus, Z., Theriot, J.A.: Comparison of quantitative methods for cell-shape analysis. Journal of microscopy 227, 140-156 (2007)
    • (2007) Journal of Microscopy , vol.227 , pp. 140-156
    • Pincus, Z.1    Theriot, J.A.2
  • 29
    • 42049110309 scopus 로고    scopus 로고
    • Deformation-based nuclear morphometry: Capturing nuclear shape variation in hela cells
    • Rohde, G.K., Ribeiro, A.J.S., Dahl, K.N., Murphy, R.F.: Deformation-based nuclear morphometry: capturing nuclear shape variation in hela cells. Cytometry Part A 73A(4), 341-350 (2008)
    • (2008) Cytometry Part A , vol.73 A , Issue.4 , pp. 341-350
    • Rohde, G.K.1    Ribeiro, A.J.S.2    Dahl, K.N.3    Murphy, R.F.4
  • 32
    • 0346756192 scopus 로고    scopus 로고
    • Automated analysis of morphometric parameters for accurate definition of erythrocyte cell shape
    • Albertini, M.C., Teodori, L., Piatti, E., Piacentini, M.P., Accorsi, A., Rocchi, M.B.L.: Automated analysis of morphometric parameters for accurate definition of erythrocyte cell shape. Cytometry Part A 52A(1), 12-18 (2003)
    • (2003) Cytometry Part A , vol.52 A , Issue.1 , pp. 12-18
    • Albertini, M.C.1    Teodori, L.2    Piatti, E.3    Piacentini, M.P.4    Accorsi, A.5    Rocchi, M.B.L.6
  • 33
  • 34
    • 26444451080 scopus 로고    scopus 로고
    • Object type recognition for automated analysis of protein subcellular location
    • Zhao, T., Velliste, M., Boland, M., Murphy, R.F.: Object type recognition for automated analysis of protein subcellular location. IEEE Trans. on Image Processing 14(9), 1351-1359 (2005)
    • (2005) IEEE Trans. on Image Processing , vol.14 , Issue.9 , pp. 1351-1359
    • Zhao, T.1    Velliste, M.2    Boland, M.3    Murphy, R.F.4
  • 36
    • 77953795044 scopus 로고    scopus 로고
    • Unsupervised unmixing of subcellular location patterns
    • Workshop on Automated Interpretation and Modeling of Cell Images (Cell Image Learning), Montreal, Canada
    • Coelho, L.P., Murphy, R.F.: Unsupervised unmixing of subcellular location patterns. In: Proceedings of ICML-UAI-COLT 2009 Workshop on Automated Interpretation and Modeling of Cell Images (Cell Image Learning), Montreal, Canada (2009)
    • (2009) Proceedings of ICML-UAI-COLT 2009
    • Coelho, L.P.1    Murphy, R.F.2
  • 39
    • 14544292885 scopus 로고    scopus 로고
    • Ypl.db2: The yeast protein localization database, version 2.0
    • Kals, M., Natter, K., Thallinger, G.G., Trajanoski, Z., Kohlwein, S.D.: Ypl.db2: the yeast protein localization database, version 2.0. Yeast 22(3), 213-218 (2005)
    • (2005) Yeast , vol.22 , Issue.3 , pp. 213-218
    • Kals, M.1    Natter, K.2    Thallinger, G.G.3    Trajanoski, Z.4    Kohlwein, S.D.5
  • 41
    • 34547830883 scopus 로고    scopus 로고
    • Automated image analysis of protein localization in budding yeast
    • Chen, S.C., Zhao, T., Gordon, G., Murphy, R.: Automated image analysis of protein localization in budding yeast. Bioinformatics 23(13), 66-71 (2007)
    • (2007) Bioinformatics , vol.23 , Issue.13 , pp. 66-71
    • Chen, S.C.1    Zhao, T.2    Gordon, G.3    Murphy, R.4
  • 42
    • 0347125201 scopus 로고    scopus 로고
    • LIFEdb: A database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system
    • Bannasch, D., Mehrle, A., Glatting, K.H., Pepperkok, R., Poustka, A., Wiemann, S.: LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system. Nucleic Acids Research 32, D505-D508 (2004)
    • (2004) Nucleic Acids Research , vol.32
    • Bannasch, D.1    Mehrle, A.2    Glatting, K.H.3    Pepperkok, R.4    Poustka, A.5    Wiemann, S.6
  • 44
    • 0034280113 scopus 로고    scopus 로고
    • Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing
    • Simpson, J., Wellenreuther, R., Poustka, A., Pepperkok, R., Wiemann, S.: Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. EMBO reports 1(3), 287-292 (2000)
    • (2000) EMBO Reports , vol.1 , Issue.3 , pp. 287-292
    • Simpson, J.1    Wellenreuther, R.2    Poustka, A.3    Pepperkok, R.4    Wiemann, S.5
  • 47
    • 34147096033 scopus 로고    scopus 로고
    • A novel method for reproducible fluorescent labeling of small amounts of antibodies on solid phase
    • Lundberg, E., Sundberg,M., Gr̈aslund, T., Uhĺen,M., Svahn, H.A.: A novel method for reproducible fluorescent labeling of small amounts of antibodies on solid phase. Journal of Immunological Methods 322(1-2), 40-49 (2007)
    • (2007) Journal of Immunological Methods , vol.322 , Issue.1-2 , pp. 40-49
    • Sundbergm., L.E.1    Uhĺenm., G.T.2    Svahn, H.A.3
  • 49
    • 65649126025 scopus 로고    scopus 로고
    • Location Proteomics: Systematic Determination of Protein Subcellular Location
    • Humana Press
    • Newberg, J., Hua, J., Murphy, R.F.: Location Proteomics: Systematic Determination of Protein Subcellular Location. In: Systems Biology, vol.500, pp. 313-332. Humana Press (2009)
    • (2009) Systems Biology , vol.500 , pp. 313-332
    • Newberg, J.1    Hua, J.2    Murphy, R.F.3
  • 50
    • 51049109867 scopus 로고    scopus 로고
    • Automated comparison of protein subcellular location patterns between images of normal and cancerous tissues
    • Glory, E., Newberg, J., Murphy, R.F.: Automated comparison of protein subcellular location patterns between images of normal and cancerous tissues. In: IEEE Intl. Symp. Biomedical Imaging, pp. 304-307 (2008)
    • (2008) IEEE Intl. Symp. Biomedical Imaging , pp. 304-307
    • Glory, E.1    Newberg, J.2    Murphy, R.F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.