-
1
-
-
0032616683
-
Identification of genetic networks from a small number of gene expression patterns under the Boolean network model
-
Akutsu, T., Miyano, S. and Kuhara, S. (1999) 'Identification of genetic networks from a small number of gene expression patterns under the Boolean network model', Pacific Symposium on Biocomputing, Vol.4, pp.17-28.
-
(1999)
Pacific Symposium on Biocomputing
, vol.4
, pp. 17-28
-
-
Akutsu, T.1
Miyano, S.2
Kuhara, S.3
-
2
-
-
33746582505
-
Non-lexical approaches to identifying associative relations in the gene ontology
-
Bodenreider, O., Aubry, M. and Burgun, A. (2005) 'Non-lexical approaches to identifying associative relations in the gene ontology', Pacific Symposium on Biocomputing, pp.104-115.
-
(2005)
Pacific Symposium on Biocomputing
, pp. 104-115
-
-
Bodenreider, O.1
Aubry, M.2
Burgun, A.3
-
3
-
-
0033736476
-
Genetic network inference: from coexpression clustering to reverse engineering
-
D'haeseleer, P., Liang, S. and Somogyi, R. (2000) 'Genetic network inference: from coexpression clustering to reverse engineering', Bioinformatics, Vol.16, pp.707-726.
-
(2000)
Bioinformatics
, vol.16
, pp. 707-726
-
-
D'haeseleer, P.1
Liang, S.2
Somogyi, R.3
-
4
-
-
0032612220
-
Linear modeling of mRNA expression levels during CNS development and injury
-
D'haeseleer, P., Wen, X., Fuhrman, S. and Somogyi, R. (1999) 'Linear modeling of mRNA expression levels during CNS development and injury', Pacific Symposium on Biocomputing, Vol.4, pp.41-52.
-
(1999)
Pacific Symposium on Biocomputing
, vol.4
, pp. 41-52
-
-
D'haeseleer, P.1
Wen, X.2
Fuhrman, S.3
Somogyi, R.4
-
5
-
-
36249003810
-
Benchmarking of dynamic Bayesian networks inferred from stochastic time-series data
-
David, L. and Wiggins, C. (2007) 'Benchmarking of dynamic Bayesian networks inferred from stochastic time-series data', in Stolovitzky and Califano (2007), pp.90-101.
-
(2007)
Stolovitzky and Califano
, vol.2007
, pp. 90-101
-
-
David, L.1
Wiggins, C.2
-
6
-
-
33846400424
-
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
-
DOI 10.1371/journal.pbio.0050008
-
Faith, J.J., Hayete, B., Thaden, J.T., Mogno, I., Wierzbowski, J., Cottarel, G., Kasif, S., Collins, J.J. and Gardner, T.S. (2007) 'Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles', PLoS. Biol., Vol.5, No.1, doi:10.1371/journal.pbio.0050008. (Pubitemid 46129527)
-
(2007)
PLoS Biology
, vol.5
, Issue.1
, pp. 0054-0066
-
-
Faith, J.J.1
Hayete, B.2
Thaden, J.T.3
Mogno, I.4
Wierzbowski, J.5
Cottarel, G.6
Kasif, S.7
Collins, J.J.8
Gardner, T.S.9
-
7
-
-
0033691754
-
Using Bayesian networks to analyze expression data
-
Friedman, N., Linial, M., Nachman, I. and Pe'er, D. (2000) 'Using Bayesian networks to analyze expression data', RECOMB'00, pp.127-135. (Pubitemid 30885645)
-
(2000)
Proceedings of the Annual International Conference on Computational Molecular Biology, RECOMB
, pp. 127-135
-
-
Friedman Nir1
Linial Michal2
Nachman Iftach3
Pe'er Dana4
-
8
-
-
33746655268
-
A GO-based method for assessing the biological plausibility of regulatory hypotheses
-
LNCS 3992
-
Gamalielsson, J., Nilsson, P. and Olsson, B. (2006) 'A GO-based method for assessing the biological plausibility of regulatory hypotheses', ICCS 2006, Part II, LNCS 3992, pp.879-886.
-
(2006)
ICCS 2006
, Issue.PART II
, pp. 879-886
-
-
Gamalielsson, J.1
Nilsson, P.2
Olsson, B.3
-
9
-
-
33645834951
-
-
John Wiley & Sons, Inc., Hoboken, NJ
-
Givens, G.H. and Hoeting, J.A. (2005) Computational Statistics, John Wiley & Sons, Inc., Hoboken, NJ.
-
(2005)
Computational Statistics
-
-
Givens, G.H.1
Hoeting, J.A.2
-
10
-
-
0344464762
-
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
-
Husmeier, D. (2003) 'Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks', Bioinformatics, Vol.19, pp.2271-2282.
-
(2003)
Bioinformatics
, vol.19
, pp. 2271-2282
-
-
Husmeier, D.1
-
11
-
-
0842309206
-
Inferring gene networks from time series microarray data using dynamic Bayesian networks
-
Kim, S.Y., Imoto, S. and Miyano, S. (2003) 'Inferring gene networks from time series microarray data using dynamic Bayesian networks', Briefings in Bioinformatics, Vol.4, pp.228-235.
-
(2003)
Briefings in Bioinformatics
, vol.4
, pp. 228-235
-
-
Kim, S.Y.1
Imoto, S.2
Miyano, S.3
-
12
-
-
26444479778
-
Optimization by simulated annealing
-
New Series
-
Kirkpatrick, S., Gelatt, C.D. and Vecchi, M.P. (1983) 'Optimization by simulated annealingScience, New Series, Vol. 220, No. 4598, pp.671-680.
-
(1983)
Science
, vol.220
, Issue.4598
, pp. 671-680
-
-
Kirkpatrick, S.1
Gelatt, C.D.2
Vecchi, M.P.3
-
13
-
-
0031616241
-
REVEAL - a general reverse engineering algorithm for inference of genetic network architectures
-
Liang, S., Fuhrman, S. and Somogyi, R. (1998) 'REVEAL - a general reverse engineering algorithm for inference of genetic network architectures', Pacific Symposium on Biocomputing, Vol.3, pp.18-29.
-
(1998)
Pacific Symposium on Biocomputing
, vol.3
, pp. 18-29
-
-
Liang, S.1
Fuhrman, S.2
Somogyi, R.3
-
14
-
-
0037480738
-
Investigating semantic similarity measures across the gene ontology: the relationship between sequence and annotation
-
Lord, P.W., Stevens, R.D., Brass, A. and Goble, C.A. (2003) 'Investigating semantic similarity measures across the gene ontology: the relationship between sequence and annotationBioinformatics, Vol. 19, No. 10, pp.1275-1283.
-
(2003)
Bioinformatics
, vol.19
, Issue.10
, pp. 1275-1283
-
-
Lord, P.W.1
Stevens, R.D.2
Brass, A.3
Goble, C.A.4
-
15
-
-
77953665829
-
Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism
-
Nemenman, I., Escola, G.S., Hlavacek, W.S., Unkefer, P.J., Unkefer, C.J. and Wall, M.E. (2007) 'Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism', in Stolovitzky and Califano (2007), pp.102-115.
-
(2007)
Stolovitzky and Califano
, vol.2007
, pp. 102-115
-
-
Nemenman, I.1
Escola, G.S.2
Hlavacek, W.S.3
Unkefer, P.J.4
Unkefer, C.J.5
Wall, M.E.6
-
16
-
-
70450168255
-
Rerendering semantic ontologies: automatic extensions to UMLS through corpus analytics
-
May, Spain
-
Pustejovsky, J., Rumshinsky, A. and Castaño, J. (2002) 'Rerendering semantic ontologies: automatic extensions to UMLS through corpus analytics', OntoLex Workshop on Ontologies and Lexical Knowledge Bases, Las Palmas de Gran Canaria, May, Spain, pp.60-67.
-
(2002)
OntoLex Workshop on Ontologies and Lexical Knowledge Bases, Las Palmas de Gran Canaria
, pp. 60-67
-
-
Pustejovsky, J.1
Rumshinsky, A.2
Castaño, J.3
-
17
-
-
33947124631
-
Combining hierarchical and associative gene ontology relations with textual evidence in estimating gene and gene product similarity
-
Sanfilippo, A., Posse, C., Gopalan, B., Riensche, R., Beagley, N., Baddeley, B., Tratz, S. and Gregory, M. (2007) 'Combining hierarchical and associative gene ontology relations with textual evidence in estimating gene and gene product similarityIEEE Transactions on Nanobioscience, Vol. 6, No. 1, pp.51-59.
-
(2007)
IEEE Transactions on Nanobioscience
, vol.6
, Issue.1
, pp. 51-59
-
-
Sanfilippo, A.1
Posse, C.2
Gopalan, B.3
Riensche, R.4
Beagley, N.5
Baddeley, B.6
Tratz, S.7
Gregory, M.8
-
18
-
-
70249134919
-
Molecular networks as sensors and drivers of common human diseases
-
Schadt, E.E. (2009) 'Molecular networks as sensors and drivers of common human diseases', Nature, Vol.461, pp.218-223.
-
(2009)
Nature
, vol.461
, pp. 218-223
-
-
Schadt, E.E.1
-
19
-
-
0034464872
-
Hypoxia, HIF-1, and the pathophysiology of common human diseases
-
Semenza, G.L., Agani, F., Feldser, D., Iyer, N., Kotch, L., Laughner, E. and Yu, A. (2000) 'Hypoxia, HIF-1, and the pathophysiology of common human diseases', Advances in Experimental Medicine and Biology, Vol.475, pp.123-130.
-
(2000)
Advances in Experimental Medicine and Biology
, vol.475
, pp. 123-130
-
-
Semenza, G.L.1
Agani, F.2
Feldser, D.3
Iyer, N.4
Kotch, L.5
Laughner, E.6
Yu, A.7
-
20
-
-
77953665007
-
-
Oregon Health and Science University, Portland, OR
-
Stevens, S., McDermott, J. and Stenzel-Poore, M. (2009) Preconditioning Induces a Type I Interferon Response to Ischemic Injury in the Brain, Oregon Health and Science University, Portland, OR.
-
(2009)
Preconditioning Induces a Type I Interferon Response to Ischemic Injury in the Brain
-
-
Stevens, S.1
McDermott, J.2
Stenzel-Poore, M.3
-
21
-
-
47149104539
-
Reverse engineering biological networks: opportunities and challenges in computational methods for pathway inference
-
New York, NY
-
Stolovitzky, G. and Califano, A. (2007) 'Reverse engineering biological networks: opportunities and challenges in computational methods for pathway inference', Annals of the New York Academy of Sciences, Vol.1115, New York, NY.
-
(2007)
Annals of the New York Academy of Sciences
, vol.1115
-
-
Stolovitzky, G.1
Califano, A.2
-
22
-
-
0032617396
-
Modeling regulatory networks with weight matrices
-
Weaver, D., Workman, T. and Stormo, D. (1999) 'Modeling regulatory networks with weight matrices', Pacific Symposium on Biocomputing, Vol.4, pp.112-123.
-
(1999)
Pacific Symposium on Biocomputing
, vol.4
, pp. 112-123
-
-
Weaver, D.1
Workman, T.2
Stormo, D.3
-
23
-
-
25444476441
-
Systematic survey reveals general applicability of 'guilt-by-association within gene coexpression networks
-
Wolfe, C.J., Kohane, I.S. and Butte, A.J. (2005) 'Systematic survey reveals general applicability of 'guilt-by-association' within gene coexpression networks', BMC Bioinformatics, Vol.6, p.227.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 227
-
-
Wolfe, C.J.1
Kohane, I.S.2
Butte, A.J.3
|