Molecular phylogeny of the endemic fern genera Cyrtomidictyum and Cyrtogonellum (Dryopteridaceae) from East Asia

Organisms Diversity and Evolution

Volumn 10, Issue 1, 2010, Pages 57-68

  Liu, Hong Mei ^a   Zhang, Xian Chun ^b   Wang, Wei ^b   Zeng, Hui ^a  

^a PEKING UNIVERSITY   (China)

^b INSTITUTE OF BOTANY   (China)

Author keywords

AtpB; East Asia; IGS; Molecular phylogeny; RbcL; Rps4 trnS; TrnL trnF

Indexed keywords

BAYESIAN ANALYSIS; CHLOROPLAST; CLADISTICS; ENDEMIC SPECIES; FERN; GENETIC ANALYSIS; GENOME; LEAF MORPHOLOGY; MAXIMUM LIKELIHOOD ANALYSIS; MOLECULAR ANALYSIS; PHYLOGENY; PHYTOGEOGRAPHY; RECONSTRUCTION; SPECIES RICHNESS; TAXONOMY;

FAR EAST;

CYRTOGONELLUM; CYRTOMIDICTYUM; CYRTOMIUM; DRYOPTERIDACEAE; FILICOPHYTA; POLYSTICHUM;

EID: 77953617286     PISSN: 14396092     EISSN: 16181077     Source Type: Journal    
DOI: 10.1007/s13127-010-0010-6     Document Type: Article

References (34)

1. Chen, Z. D., Wang, X. Q., Sun, H. Y., Han, Y., Zhang, Z. X., Zou, Y. P., et al. (1998). Systematic position of the Rhoipteleaceae: evidence from nucleotide sequences of the rbcL gene. Acta Phytotaxonomica Sinica, 36, 1-7.
2. Ching, R. C. (1938). A revision of the Chinese and Sikkim-Himalayan Dryopteris with reference to some species from neighbouring regions. Bulletin of the Fan Memorial Institute of Biology/ Botanical Series, 8, 327-331.
3. Ching, R. C. (1940). The studies of Chinese ferns-XXXIII. Bulletin of the Fan Memorial Institute of Biology/Botanical Series, 8, 173-184.
4. Ching, R. C. (1957). Cyrtomidictyum Ching, a yet little known Chinese fern genus. Acta Phytotaxonomica Sinica, 6, 255-266.
5. Ching, R. C. (1978). The Chinese fern families and genera: systematic arrangement and historical origin. Acta Phytotaxonomica Sinica, 16(3), 1-19. 16(4), 16-37.
6. Copeland, E. B. (1947). Genera filicum. The genera of ferns. Waltham: Chronia Botanica Company.
7. Doyle, J. J., & Doyle, J. L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19, 11-15.
8. Gastony, G. J., & Rollo, D. R. (1995). Phylogeny and generic circumscriptions of cheilanthoid ferns (Pteridaceae: Cheilanthoideae) inferred from rbcL nucleotide sequences. American Fern Journal, 85, 341-360.
9. Geiger, J. M., & Ranker, T. A. (2005). Molecular phylogenetics and historic biogeography of Hawaiian Dryopteris (Dryopteridaceae).Molecular Phylogenetics and Evolution, 34, 392-407.
10. Guindon, S., & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704.
11. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
12. Hasebe, M., Wolf, P. G., Pryer, K. M., Ueda, K., Ito, M., Sano, R., et al. (1995). Fern phylogeny based on rbcL nucleotide sequences. American Fern Journal, 85, 134-181.
13. Kramer, K. U., Holttum, R. E., Moran, R. C., & Smith, A. R. (1990). Dryopteridaceae. In K. Kubitzki (Ed.), The families and genera of vascular plants (pp. 99-144). Berlin: Springer-Verlag.
14. Kung, H. S., Chu, W. M., He, Z. R., & Zhang, L. B. (2001). Polystichum. In H. S. Kung (Ed.), Flora reipublicae popularis sinicae (pp. 1-177). Beijing: Science.
15. Li, C. X., & Lu, S. G. (2006). Phylogenetic analysis of Dryopteridaceae based on chloroplast rbcL sequences. Acta Phytotaxonomica Sinica, 44, 503-515.
16. Li, C. X., Lu, S. G., & Yang, Q. (2004). Asian origin for Polystichum (Dryopteridaceae) based on rbcL sequences. Chinese Science Bulletin, 49, 1146-1150.
17. Li, C. X., Lu, S. G., & Barrington, D. S. (2008). Phylogeny of Chinese Polystichum (Dryopteridaceae) based on chloroplast DNA sequence data (trnL-F and rps4-trnS). Journal of Plant Research, 121, 19-26.
18. Little, D. P., & Barrington, D. S. (2003). Major evolutionary events in the origin and diversification of the fern genus Polystichum (Dryopteridaceae). American Journal of Botany, 90, 508-514.
19. Liu, H. M., Zhang, X. C., Chen, Z. D., & Qiu, Y. L. (2007a). Inclusion of the eastern Asia endemic genus Sorolepidium in Polystichum (Dryopteridaceae): evidence from the chloroplast rbcL gene and morphological characteristics. Chinese Science Bulletin, 52, 631-638.
20. Liu, H. M., Zhang, X. C., Wang, W., Qiu, Y. L., & Chen, Z. D. (2007b). Molecular phylogeny of the fern family Dryopteridaceaeinferred from chloroplast rbcL and atpB genes. International Journal of Plant Sciences, 689, 1311-1323.
21. Lu, J. M., Li, D. Z., Gao, L. M., Cheng, X., & Wu, D. (2005). Paraphyly of Cyrtomium (Dryopteridaceae): evidence from rbcL and trnL-F sequences data. Journal of Plant Research, 118, 129-135.
22. Lu, J. M., Barrington, D. S., & Li, D. Z. (2007). Molecular phylogeny of the polystichoid ferns in Asia based on rbcL sequences. Systematic Botany, 32, 26-33.
23. Pichi Sermolli, R. E. G. (1977). Tentamen pteridophytorum genera in taxonomicum ordinem redigendi. Webbia, 31, 313-512.
24. Posada, D., & Crandall, K. A. (1998). Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
25. Ronquist, F., & Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
26. Schneider, H., Smith, A. R., Cranfill, R., Haufler, C. H., Ranker, T. A., & Hildebrand, T. (2002). Gymnogrammitis dareiformis is a polygrammoid fern (Polypodiaceae)-resolving an apparent conflict between morphological and molecular data. Plant Systematics and Evolution, 234, 121-136.
27. Taberlet, P., Gielly, L., Pautou, G., & Bouvet, J. (1991). Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology, 17, 1105-1109.
28. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., & Higgins, D. G. (1997). The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882.
29. Thomson, J. A., Chikuni, A. C., & McMaster, C. S. (2005). The taxonomic status and relationships of bracken ferns (Pteridium: Dennstaedtiaceae) from sub-Saharan Africa. Botanical Journal of the Linnean Society, 148, 311-321.
30. Tryon, A. F., & Lugardon, B. (1991). Spores of the Pteridophyta. New York: Springer-Verlag.
31. Tryon, R. M., & Tryon, A. F. (1982). Ferns and allied plants, with special reference to tropical America. New York: Springer-Verlag.
32. Wu, S. H., & Ching, R. C. (1991). Fern families and genera of China. Beijing: Science.
33. Wu, S. G., Xiang, J. Y., & Phan, K. L. (2005). Some new records of ferns from Vietnam (1). Acta Botanica Yunnanica, 27, 249-252.
34. Xie, Y. T. (1990). Classification and distribution of Cyrtogonellum Ching. Bulletin of Botanical Research, 10, 93-97.