Molecular phylogeny of the polystichoid ferns in Asia based on rbcL sequences

Systematic Botany

Volumn 32, Issue 1, 2007, Pages 26-33

  Lu, Jin Mei ^a   Barrington, David S ^b   Li, De Zhu ^a  

^a KUNMING INSTITUTE OF BOTANY   (China)

^b UNIVERSITY OF VERMONT   (United States)

Author keywords

BCPC group; Cyrtomium s.s.; Molecular phylogeny; Polystichoid ferns; Polystichum s.s.; rbcL

Indexed keywords

CYRTOGONELLUM; CYRTOMIDICTYUM; CYRTOMIUM; FILICOPHYTA; PHANEROPHLEBIA; POLYSTICHUM;

EID: 34147137653     PISSN: 03636445     EISSN: 15482324     Source Type: Journal    
DOI: 10.1600/036364407780360193     Document Type: Article

References (40)

1. ALFARO, M. E., S. ZOLLER, and F. LUTZONI. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and Bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution 20: 255-266.
2. BARRINGTON, D. S. 1985. The present evolutionary and taxonomic status of the fern genus Polystichum: the 1984 Botanical society of America pteridophyte section symposium. American Fern Journal 75: 22-28.
3. CHING, R. C. 1938. A revision of the Chinese and Sikkim-Himalayan Dryopteris with reference to some species from neighbouring regions. Bulletin of the Fan Memorial Institute of Biology 8: 275-334.
4. _. 1940. The studies of Chinese ferns XXXIII. Bulletin of the Fan Memorial Institute of Biology 8: 275-334.
5. CHRISTENSEN, C. 1930. The genus Cyrtomium. American Fern Journal 20: 41-52.
6. COPELAND, E. B. 1947. Genera Filicum. Waltham: The Chronica Botanica Company.
7. DAIGOBO, S. 1972. Taxonomical studies on the fern genus Polystichum in Japan, Ryukyu, and Taiwan. The Science Report of the Tokyo Kyoiku Daigaku. Sec. B. 15: 57-80.
8. DOYLE, J. J. and J. L. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
9. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
10. FRASER-JENKINS, C. R. 1997. Himalayan ferns: a guide to Polystichum. Dehra Dun, India: International Book Distributors.
11. HASEBE, M., M. ITO, R. KOFUJI, K. UEDA, and K. IWATSUKI. 1993. Phylogenetic relationships of ferns deduced from rbcL gene sequences. Journal of Molecular Evolution 37: 476-482.
12. _, T. OMORI, M. NAKAZAWA, T. SANO, M. KATO, and K. IWATSUKI. 1994. rbcL gene sequences provide evidence for the evolutionary lineages of leptosporangiate ferns. Proceedings of the National Academy of Sciences, USA 91: 5730-5734.
13. _, P. G. WOLF, K. M. PRYER, K. UEDA, M. ITO, R. SANO, G. J. GASTONY, J. YOKOYAMA, J. R. MANHART, N. MURAKAMI, E. H. CRANE, C. H. HAUFLER, and W. D. HAUK. 1995. Fern phylogeny based on rbcL nucleotide sequences. American Fern Journal 85: 134-181.
14. HAUK, W. D., C. R. PARKS, and M. W. CHASE. 2003. Phylogenetic studies of Ophioglossaceae: evidence from rbcL plastid DNA sequences and morphology. Molecular Phylogenetics and Evolution 28: 131-151.
15. HILLIS, D. M. and J. P. HUELSENBECK. 1992. Signal, noise, and reliability in molecular phylogenetic analyses. Journal of Heredity 83: 189-195.
16. KRAMER, K. U. 1990. Dryopteridaceae. Pp. 101-144 in The families and genera of vascular plants. Vol. 1 Pteridophytes and gymnosperms, eds. K. U. Kramer and P. S. Green. Berlin: Springer-Verlag.
17. KUNG, H. S., L. B. ZHANG, W. M. ZHU, Z. R. HE, and Y. T. XIE. 2001. Dryopteridaceae. Pp. 1-222 in Flora Reipublicae Popularis Sinicae. Tomus 5(2), ed. Kung, H. S. Beijing: Science Press.
18. LI, C. X., S. G. LU, and Q. YANG. 2004. Asian origin for Polystichum (Dryopteridaceae) based on rbcL sequences. Chinese Science Bulletin 49: 874-878.
19. LITTLE, D. P. and D. S. BARRINGTON. 2003. Major evolutionary events in the origin and diversification of the fern genus Polystichum (Dryopteridaceae). American Journal of Botany 90: 508-514.
20. LOVIS, J. D. 1977. Evolutionary patterns and processes in ferns. Advances in Botanical Research 4: 229-415.
21. LU, J. M., X. CHENG, D. WU, and D. Z. LI. 2006. Chromosome study of the fern genus Cyrtomium (Dryopteridaceae). Botanical Journal of the Linnean Society 150: 221-228.
22. _, D. Z. LI, L. M. GAO, X. CHENG, and D. WU. 2005. Paraphyly of Cyrtomium (Dryopteridaceae): evidence from rbcL and trnL-F sequence data. Journal of Plant Research 118: 129-135.
23. MURAKAMI, N., S. NOGAMI, M. WATANABE, and K. IWATSUKI. 1999. Phylogeny of Aspleniaceae inferred from rbcL nucleotide sequences. American Fern Journal 89: 232-243.
24. PICHI-SERMOLLI, R. E. G. 1977. Tentamen Pteridophytorum genera in taxonomicum ordinem redigendi. Webbia 31: 313-512.
25. PRYER, K. M., A. R. SMITH, and J. E. SKOG. 1995. Phylogenetic relationships of extant ferns based on evidence from morphology and rbcL sequences. American Fern Journal 85: 205-282.
26. RONQUIST, F. and J. P. HUELSENBECK. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
27. SANO, R., M. TAKAMIYA, M. ITO, S. KURITA, and M. HASEBE. 2000. Phylogeny of the lady fern group, tribe Physematieae (Dryopteridaceae) based on chloroplast rbcL gene sequences. Molecular Phylogenetics and Evolution 15: 403-413.
28. SHING, K. H. 1965. A taxonomical study of the genus Cyrtomium Pr. Acta Phytotaxonomica Sinica Additamentum: 1-48.
29. STEIN, D. B., G. YATSKIEVYCH, and G. J. GASTONY. 1989. Chloroplast DNA evolution and phylogeny of some polystichoid ferns. Biochemical Systematics and Ecology 17: 93-101.
30. SUZUKI, Y., G. V. GLAZKO, and M. NEI. 2002. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proceedings of the National Academy of Sciences. USA 99: 16138-16143.
31. SWOFFORD, D. L. 2001. PAUP*. Phylogenetic analysis using parsimony (*and other methods), Version 4. Sunderland: Sinauer Associates Inc.
32. TAGAWA, M. 1940. Polystichum of Japan, Korea, and Formosa I. Acta Phytotaxonomica et Geobotanica 9: 119-138.
33. TRYON, R. M. and A. F. TRYON. 1982. Ferns and allied plants: with special reference to tropical America. New York: Springer-Verlag.
34. WOLF, P. G., P. S. SOLTIS, and D. E. SOLTIS. 1994. Phylogenetic relationships of dennstaedtioid ferns: evidence from rbcL sequences. Molecular Phylogenetics and Evolution 3: 383-392.
35. WU, S. H. and R. C. CHING. 1991. Fern families and genera of China. Beijing: Science Press.
36. YATSKIEVYCH, G. 1990. Systematics of the fern genus Cyrtomium in the new world. Ph.D. Dissertation, Indiana University: Bloomington, Indiana.
37. _. 1996. A revision of the fern genus Phanerophlebia (Dryopteridaceae). Annals of the Missouri Botanical Garden 83: 168-199.
38. _, D. B. STEIN, and G. J. GASTONY. 1988. Chloroplast DNA evolution and systematics of Phanerophlebia (Dryopteridaceae) and related genera. Proceedings of the National Academy of Sciences, USA. 85: 2589-2593.
39. ZHANG, L. B. and H. S. KUNG. 1999. A new section of the fern genus Polystichum Roth - sect. Neopolystichum Ching. Acta Phytotaxonomica Sinica. 37: 81-86.
40. ZHU, W. M. and Z. R. HE. 2001. Addenda. Pp. 223-228 in Flora Reipublicae Popularis Sinicae. Tomus 5 (2), ed. H. S. Kung. Beijing: Science Press.