Plant treatment, pollutant load, and soil type effects in rhizosphere ecology of trace element polluted soils

Ecotoxicology and Environmental Safety

Volumn 73, Issue 5, 2010, Pages 970-981

  Belen Hinojosa M ^a,c   Carreira, José A ^a   García Ruíz, Roberto ^a   Rodríguez Maroto, José M ^b   Daniell, Tim J ^c   Griffiths, Bryan S ^d  

^a UNIVERSITY OF JAÉN   (Spain)

^b UNIVERSITY OF MÁLAGA   (Spain)

^c SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^d TEAGASC   (Ireland)

Author keywords

Bacteria; Enzyme activity; Nematode; Rhizosphere; Trace element

Indexed keywords

ARSENIC; CADMIUM; CHROMIUM; COPPER; HYDROLASE; IRON; LEAD; MANGANESE; MERCURY; NICKEL; PYRITE; TRACE ELEMENT; ZINC;

BACTERIUM; ENZYME ACTIVITY; NEMATODE; PLANT; POLLUTION EFFECT; RHIZOSPHERE; SOIL POLLUTION; SOIL QUALITY; SOIL TYPE; TRACE ELEMENT;

ALFALFA; ARTICLE; BACTERIOLOGY; BIOCHEMISTRY; BIODIVERSITY; CHELATION; CONTROLLED STUDY; ENZYME ACTIVITY; MINING; NEMATODE; NONHUMAN; PERENNIAL RYEGRASS; PH; PLANT GROWTH; POLLUTION TRANSPORT; REVEGETATION; RHIZOSPHERE; SANDY LOAM; SLUDGE; SOIL POLLUTION; SOIL QUALITY; SPAIN;

ANIMALS; BACTERIA; BIODEGRADATION, ENVIRONMENTAL; ECOLOGY; HYDROGEN-ION CONCENTRATION; HYDROLASES; IRON; LOLIUM; MEDICAGO SATIVA; NEMATODA; SOIL POLLUTANTS; SULFIDES; TRACE ELEMENTS;

BACTERIA (MICROORGANISMS); LOLIUM PERENNE; MEDICAGO SATIVA;

EID: 77953538735     PISSN: 01476513     EISSN: 10902414     Source Type: Journal    
DOI: 10.1016/j.ecoenv.2010.01.013     Document Type: Article

References (82)

1. Albadalejo J., Castillo V., Roldán A. Rehabilitation of degraded soils by water erosion in semiarid environment. Soil Degradation and Desertification in Semiarid Environments 1996, 265-278. Geoforma, Logroño. J.L. Rubio, A. Calvo (Eds.).
2. Alloway B.J., Jackson A.P. The behavior of heavy metals in sewage-sludge amended soils. Sci. Total Environ. 1991, 100:151-176.
3. Arienzo M., Adamo P., Cozzolino V. The potential of Lolium perenne for revegetation of contaminated soil from a metallurgical site. Sci. Total Environ. 2004, 319:13-25.
4. Bais H.P., Weir T.L., Perry L.G., Gilroy S., Vivanco J.M. The role of root exudates in rhizosphere interactions with plants and other organisms. Annu. Rev. Plant Biol. 2006, 57:233-266.
5. Baudoin E., Benizri E., Guckert A. Impact of artificial root exudates on the bacterial community structure in bulk soil and maize rhizosphere. Soil Biol. Biochem. 2003, 35:1183-1192.
6. Bell F.G. Environmental Geology: Principles and Practice 1998, Blackwell Science Ltd., Oxford, 594pp.
7. Bongers T. The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia 1990, 83:14-19.
8. Bongers T., Bongers M. Functional diversity of nematodes. Appl. Soil Ecol. 1998, 10:239-251.
9. Bouwman L.A., Bloem J., Römkens P.F.A.M., Japenga J. EDGA amendment of slightly heavy metal loaded soil affects heavy metal solubility, crop growth and microbivorous nematodes but not bacteria and herbivorous nematodes. Soil Biol. Biochem. 2005, 37:271-278.
10. Bremner J.M., Tabatabai M.A. Effect of some inorganic substances on TTC assay of dehydrogenase activity in soils. Soil Biol. Biochem. 1973, 5:385-386.
11. Brown D.J.F., Boag B. An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples. Nematol. Medit. 1988, 16:93-99.
12. Camobreco V.J., Richards B.K., Steenhuis T.S., Peverly J.H., McBride M.B. Movement of heavy metals through undisturbed and homogenized soil columns. Soil Sci. 1996, 161:740-750.
13. Carreira J.A., Viñegla B., García-Ruíz R., Ochoa V., Hinojosa M.B. Recovery of biochemical functionality in polluted flood-plain soils: the role of microhabitat differentiation through revegetation and rehabilitation of the river dynamics. Soil Biol. Biochem. 2008, 40:2088-2097.
14. Casida L.E., Klein D.A., Santero T. Soil dehydrogenase activity. Soil Sci. 1964, 98:371-376.
15. Cattani I., Fragoulis G., Boccelli R., Capri E. Copper bioavailability in the rhizosphere of maize (Zea mays L.) grown in two Italian soils. Chemosphere 2006, 64:1972-1979.
16. Chander K., Brookes P.C. Is the dehydrogenase assay invalid as a method to estimate microbial activity in Cu-contaminated and non-contaminated soils?. Soil Biol. Biochem. 1991, 23:901-915.
17. Consejería de Medio Ambiente, 2002. Programa de Investigación del Corredor Verde del Guadiamar. PICOVER 1999-2002. Sevilla, 192pp.
18. Degryse F., Verma V.K., Smolders E. Mobilization of Cu and Zn by root exudates of dicotyledonous plants in resin-buffered solutions and soils. Plant Soil 2008, 306:69-84.
19. DellAmico E., Cavalca L., Andreoni V. Analysis of rhizobacterial communities in perennial Graminaceae from polluted water meadow soil, and screening of metal-resistant, potentially plant growth-promoting bacteria. FEMS Microbiol. Ecol. 2004, 52:153-162.
20. Dessureault-Rompré J., Nowack B., Schulin R., Tercier-Waeber M.-L., Luster J. Metal solubility and speciation in the rhizosphere of Lupinus albus cluster roots. Environ. Sci. Technol. 2008, 42:7146-7151.
21. Ellis R.J., Neish B., Trett M.W., Best J.G., Weightman A.J., Morgan P., Fry J.C. Comparison of microbial and meiofaunal community analyses for determining impact of heavy metal contamination. J. Microbiol. Methods 2001, 45:171-185.
22. FAO/UNESCO FAO/UNESCO. Soil Map of the World 1974, vol. I. FAO, Rome.
23. García C., Roldan A., Hernández T. Ability of different plant species to promote microbiological processes in semiarid soil. Geoderma 2005, 124:193-202.
24. Gardea-Torresdey J.L., Tiemann K.J., Gamez G., Dokken K. Effects of chemical competition for multi-metal binding by Medicago satia alfalfa. J. Hazard. Mater. 1999, 69:41-51.
25. Gianfreda L., Sannino F., Ortega N., Nannipieri P. Activity of free and inmobilized urease in soil: effects of pesticides. Soil Biol. Biochem. 1994, 26:777-784.
26. Gremion F., Chatzinotas A., Kaufman K., Von Sigler W., Harms H. Impact of heavy metal contamination and phytoremediation on a microbial community during a twelve-month microcosm experiment. FEMS Microbiol. Ecol. 2004, 48:273-283.
27. Hees P.A.W.V., Lundstrom U.S., Giesler R. Low molecular weight organic acids and their complexes in soil solution-composition, distribution and seasonal variation in three podzolized soils. Geoderma 2000, 94:173-200.
28. Hinojosa M.B., Carreira J.A., García-Ruíz R., Dick R.P. Soil moisture pre-treatment effects on enzyme activities as indicators of heavy metal-contaminated and reclaimed soils. Soil Biol. Biochem. 2004, 36:1559-1568.
29. Hinojosa M.B., Carreira J.A., Rodríguez-Maroto J.M., García-Ruíz R. Effects of pyrite sludge pollution on soil enzyme activities: ecological dose-response model. Sci. Total Environ. 2008, 396:89-99.
30. Hinojosa M.B., García-Ruíz R., Viñegla B., Carreira J.A. Microbial rates and enzyme activities as indicators of functionality in soils affected by the Aznalcóllar toxic spill. Soil Biol. Biochem. 2004, 36:1637-1644.
31. Hinojosa M.B., Carreira J.A., García-Ruíz R., Dick R.P. Microbial response to heavy metal-polluted soils: community analysis from phospholipid-linked fatty acids and ester-linked fatty acids extracts. J. Environ. Qual. 2005, 34:1789-1800.
32. Hinsinger P., Plassard C., Jaillard B. Rhizosphere: a new frontier for soil biogeochemistry. J. Geochem. Explor. 2005, 88:210-213.
33. Hofmann J., Grundler F.M.W. How do nematodes get their sweets? Solute supply to sedentary plant-parasitic nematodes. Nematology 2007, 4:451-458.
34. Ibekwe A.M., Kennedy A.C. Fatty acid methyl ester (FAME) profiles as a tool to investigate community structure of two agricultural soils. Plant Soil 2003, 151:151-161.
35. Kandeler E., Marschner P., Tscherko D., Gahoonia T.S., Nielsen N.E. Microbial community composition and functional diversity in the rhizosphere of maize. Plant Soil 2002, 238:301-312.
36. Keeney D.R., Nelson D.W. Nitrogen-inorganic forms. Methods of Soil Analysis. Part 2, Chemical and Microbiological Properties 1982, 625-642. ASA-SSSA, Madison (WI). A.L. Page, R.H. Miller, D.R. Keeney (Eds.).
37. Killham K. Soil Ecology 1994, Cambridge University Press, Cambridge, 260pp.
38. Korthals G., Lexmond T., Kammenga J., Bongers T. Long-term effects of copper and pH on the nematode community in an agroecosystem. Environ. Toxicol. Chem. 1996, 15:979-985.
39. Kools A.E.S., Boivin M.-E.Y., Van Der Wurff A.W.G., Berg M.P., Van Gestel C.A.M., Van Straalen N.M. Assessment of structure and function in metal polluted grasslands using terrestrial model ecosystems. Ecotoxicol. Environ. Saf. 2009, 72:51-59.
40. Lacal J., da Silva M.P., García R., Sevilla M.T., Procopio J.R., Hernández L. Study of fractionation and potential mobility of metal in sludge from pyrite mining and affected river sediments: changes in mobility over time and use of artificial ageing as a tool in environmental impact assessment. Environ. Pollut. 2003, 124:291-305.
41. Lane D. 16S/23S rRNA squencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. John Wiley & Sons, Chichester, UK. E. Stackebrandt, M. Goodfellow (Eds.).
42. Liao M., Xie X.M. Effect of heavy metals on substrate utilization pattern, biomass, and activity of microbial communities in a reclaimed mining wasteland of red soil area. Ecotoxicol. Environ. Saf. 2007, 66:217-223.
43. López-Pamo E., Barettino F.D., Antón P.C., Ortíz G., Arranz G., Gumiel J.C., Martínez-Pledel B., Aparicio M., Montouto O. The extent of the Aznalcóllar pyritic sludge spill and its effects on soils. Sci. Total Environ. 1999, 242:57-88.
44. Lynch J.M., Bragg E. Microorganisms and soil aggregate stability. Adv. Soil Sci. 1985, 2:133-171.
45. Maiz I., Esnaola M.V., Millán E. Evaluation of heavy metal availability in contaminated soils by a short sequential extraction procedure. Sci. Total Environ. 1997, 206:107-115.
46. Marchesi J.R., Sato T., Weightman A.J., Matin T.A., Fry J.C., Hiom S.J., Wade W.G. Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl. Environ. Microbiol. 1998, 64:795-799.
47. Marschner P., Griersonb P.F., Rengel Z. Microbial community composition and functioning in the rhizosphere of three Banksia species in native woodland in Western Australia. Appl. Soil Ecol. 2005, 28:191-201.
48. Marschner P., Yang C.H., Lieberei R., Crowley D.E. Soil and plant specific effects on bacterial community composition in the rhizosphere. Soil Biol. Biochem. 2001, 33:1437-1445.
49. Martínez-Alcalá I., Clemente R., Bernal M.P. Metal availability and chemical properties in the rhizosphere of Lupinus albus L. growing in a high-metal calcareous soils. Water Air Soil Pollut. 2009, 201:283-293.
50. Martínez-Alcalá, I., Walker, D.J., Bernal, M.P., 2010. Chemical and biological properties in the rhizosphere of Lupinus albus alter soil heavy metal fractionation. Ecotoxicol. Environ. Saf., in press, doi:10.1016/j.ecoenv.2009.12.009.
51. McCune B., Mefford M.J. PC-ORD for Windows. Multivariate Analysis of Ecological Data, Version 4.01 1999, MjM Sofware, Oregon, USA.
52. McLean E.O. Soil pH and lime requirement. Methods of Soil Analysis, Part 2. Chemical and Microbiological Properties 1982, 199-224. ASA-SSSA, Madison, WI. A.L. Page, R.H. Miller, D.R. Keeney (Eds.).
53. Müller A.K., Westergaard K., Christensen S., Sørensen S.J. The diversity and function of soil microbial communities exposed to different disturbances. Microb. Ecol. 2002, 44:49-58.
54. Nagy P. Effect of an artificial metal pollution on nematode assemblage of a calcareous loamy chernozem soil. Plant Soil 1999, 212:35-43.
55. Nannipieri P., Ascher J., Ceccherini M.T., Landi L., Pietramellara G., Renella G. Microbial diversity and soil functions. Eur. J. Soil Sci. 2003, 54:655-670.
56. Paton G.I., Viventsova E., Kumpenec J., Wilson M.J., Weitza H.J., Dawson J.J.C. An ecotoxicity assessment of contaminated forest soils from the Kola Peninsula. Sci. Total Environ. 2006, 355:106-117.
57. Pennanen T., Caul S., Daniell T.J., Griffiths B.S., Ritz K., Wheatley R. Community-level responses of metabolically-active soil microorganisms to the quantity and quality of substrate inputs. Soil Biol. Biochem. 2004, 36:841-848.
58. Pérez-de-Mora A., Ortega-Calvo J.J., Cabrera F., Madejón E. Changes in enzyme activities and microbial biomass after "in situ" remediation of a heavy metal-contaminated soil. Appl. Soil Ecol. 2005, 28:125-137.
59. Pérez-de-Mora A., Madrid F., Cabrera F., Madejón E. Amendments and plant cover influence on trace element pools in a contaminated soil. Geoderma 2007, 139:1-10.
60. Pinton R., Varanini Z., Nannipieri P. The Rhizosphere: Biochemistry and Organic Substrances at the Soil-Plant Interface 2001, Marcel Dekker, New York.
61. Qin F., Shan X.Q., Wei B. Effects of low-molecular-weight organic acids and residence time on desorption of Cu, Cd, and Pb from soils. Chemosphere 2004, 57:253-263.
62. Renella G., Landi L., Nannipieri P. Degradation of low molecular weight organic acids complexed with heavy metals in soil. Geoderma 2004, 122:311-315.
63. Renella G., Landi L., Valori F., Nannipieri P. Microbial and hydrolase activity after release of low molecular weight organic compounds by a model root surface in a clayey and sandy soil. Appl. Soil Ecol. 2007, 36:124-129.
64. Sauvé S., McBride M.B., Hendershot W.H. Speciation of lead in contaminated soils. Environ. Pollut. 1997, 98:149-155.
65. Schwab A.P., He Y.H., Banks M.K. The influence of organic ligands on the retention of lead in soil. Chemosphere 2005, 61:856-866.
66. Schwab A.P., Zhu D.S., Banks M.K. Influence of organic acids on the transport of heavy metals in soil. Chemosphere 2008, 72:986-994.
67. Shao, Y., Zhang, W., Shen, J., Zhou, L., Xia, H., Shu, W., Ferris, H., Fu, S., 2008. Nematodes as indicators of soil recovery in tailings of a lead/zinc mine, Soil Biol. Biochem. 40, 2040-2046.
68. Shen H., Wang X.C., Shi W.M. Isolation and identification of specific root exudates in elephantgrass in response to mobilization of iron- and aluminum-phosphates. J. Plant Nutr. 2001, 24:1117-1130.
69. Singh B.K., Munro S., Potts J.M., Millard P. Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils. Appl. Soil Ecol. 2007, 33:147-155.
70. Söderberg K.H., Probanza A., Jumpponen A., Bååth E. The microbial community in the rhizosphere determined by community-level physiological profiles (CLPP) and direct soil- and cfu-PLFA techniques. Appl. Soil Ecol. 2004, 25:135-145.
71. Southey J.F. Laboratory Methods for Work with Plant and Soil Nematodes 1970, Ministry of Agriculture, Fisheries and Food, London, 285pp.
72. Speir W., Kettles H.A., Parshotam A., Searle P.L., Vlaar L.N.C. A simple kinetic approach to derive the ecological dose value, ED50, for the assessment of Cr(VI) toxicity to soil biological properties. Soil Biol. Biochem. 1995, 27:801-810.
73. Speir T.W., Ross D.J. Hydrolytic enzyme activities to assess soil degradation and recovery. Enzymes in the Environment. Activity, Ecology and Applications 2002, 407-431. Marcel Dekker, New York. R.G. Burns, R.P. Dick (Eds.).
74. Speir T.W., Ross D.J., Feltham C.W., Orchard V.A., Yeates G. Assessment of the feasibility of using CCA (copper, chromium and arsenic)-treated and boric acid-treated sawdust as soil amendments. II. Soil biochemical and biological properties. Plant Soil 1992, 142:249-258.
75. Speir T.W., Kettles H.A., Percival H.J., Parshotam A. Is soil acidification the cause of biochemical response when soils are amended with heavy metal salts?. Soil Biol. Biochem. 1999, 31:1953-1961.
76. StatSoft, Inc., 2004. STATISTICA (data analysis software system), version 7. http://www.statsorf.com.
77. Tabatabai M.A. Soil enzymes. Methods of Soil Analysis. Part 2: Microbial and Biochemical Properties 1994, 775-833. Soil Science Society of America, Madison, WI. R.W. Weaver, J.S. Angle, P.J. Bottomley, D.F. Bezdicek, S. Smith, M.A. Tabatabai, A.G. Wollum (Eds.).
78. Van Breemen N. Soil acidification and alkalinization. Soil Acidity 1991, Springer, Berlin. R. Ulrich, M.E. Sumner (Eds.).
79. Van-Camp, L., Bujarrabal, B., Gentile, A.R., Jones, R.J.A., Montanarella, L., Olazabal, C., Selvaradjou, S.K., 2004. Reports of the Technical Working Groups established under the Thematic Strategy for Soil Protection. EUR 21319 EN/4, Office for Official Publications of the European Communities, Luxembourg, 872pp.
80. Zhang H.-B., Yang M.-X., Shi W., Zheng Y., Sha T., Zhao T.-W. Bacterial diversity in mine tailings compared by cultivation and cultivation-independent methods and their resistance to lead and cadmium. Microb. Ecol. 2007, 54:705-712.
81. Zak J.C., Willing M.R., Moorhead D.L., Wildman H.G. Functional diversity of microbial communities: a quantitative approach. Soil Biol. Biochem. 1994, 26:1101-1108.
82. Zullini A., Peretti E. Lead pollution and moss-inhabiting nematodes of an industrial area. Water Air Soil Pollut. 1986, 27:403-410.