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Volumn 3, Issue 1, 2010, Pages

Efficiency of Xist-mediated silencing on autosomes is linked to chromosomal domain organisation

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; REGULATOR PROTEIN; UNCLASSIFIED DRUG; XIST PROTEIN;

EID: 77953388266     PISSN: None     EISSN: 17568935     Source Type: Journal    
DOI: 10.1186/1756-8935-3-10     Document Type: Article
Times cited : (46)

References (38)
  • 1
    • 37049245274 scopus 로고
    • Mammalian X-chromosome action: Inactivation limited in spread and region of origin
    • 10.1126/science.140.3570.976. 13975649
    • Mammalian X-chromosome action: inactivation limited in spread and region of origin. LB Russell, Science 1963 140 976 978 10.1126/science.140.3570.976 13975649
    • (1963) Science , vol.140 , pp. 976-978
    • Russell, L.B.1
  • 2
    • 0018699206 scopus 로고
    • Late replication in an X-autosome translocation in the mouse: Correlation with genetic inactivation and evidence for selective effects during embryogenesis
    • 10.1073/pnas.76.10.5234. 291940
    • Late replication in an X-autosome translocation in the mouse: correlation with genetic inactivation and evidence for selective effects during embryogenesis. CM Disteche EM Eicher SA Latt, Proc Natl Acad Sci USA 1979 76 5234 5238 10.1073/pnas.76.10.5234 291940
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 5234-5238
    • Disteche, C.M.1    Eicher, E.M.2    Latt, S.A.3
  • 3
    • 0016299216 scopus 로고
    • Position effect variegation in the mouse
    • 10.1017/S0016672300014932. 4435357
    • Position effect variegation in the mouse. BM Cattanach, Genet Res 1974 23 291 306 10.1017/S0016672300014932 4435357
    • (1974) Genet Res , vol.23 , pp. 291-306
    • Cattanach, B.M.1
  • 4
    • 0020955150 scopus 로고
    • Two new X-autosome translocations in the mouse
    • 10.1159/000131880. 6578005
    • Two new X-autosome translocations in the mouse. AG Searle CV Beechey EP Evans M Kirk, Cytogenet Cell Genet 1983 35 279 292 10.1159/000131880 6578005
    • (1983) Cytogenet Cell Genet , vol.35 , pp. 279-292
    • Searle, A.G.1    Beechey, C.V.2    Evans, E.P.3    Kirk, M.4
  • 5
    • 0026456701 scopus 로고
    • The human XIST gene: Analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus
    • 10.1016/0092-8674(92)90520-M. 1423611
    • The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus. CJ Brown BD Hendrich JL Rupert RG Lafreniere Y Xing J Lawrence HF Willard, Cell 1992 71 527 542 10.1016/0092-8674(92)90520-M 1423611
    • (1992) Cell , vol.71 , pp. 527-542
    • Brown, C.J.1    Hendrich, B.D.2    Rupert, J.L.3    Lafreniere, R.G.4    Xing, Y.5    Lawrence, J.6    Willard, H.F.7
  • 6
    • 0026489906 scopus 로고
    • The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus
    • 10.1016/0092-8674(92)90519-I. 1423610
    • The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. N Brockdorff A Ashworth GF Kay VM McCabe DP Norris PJ Cooper S Swift S Rastan, Cell 1992 71 515 526 10.1016/0092-8674(92)90519-I 1423610
    • (1992) Cell , vol.71 , pp. 515-526
    • Brockdorff, N.1    Ashworth, A.2    Kay, G.F.3    McCabe, V.M.4    Norris, D.P.5    Cooper, P.J.6    Swift, S.7    Rastan, S.8
  • 7
    • 0030026001 scopus 로고    scopus 로고
    • Requirement for Xist in X chromosome inactivation
    • 10.1038/379131a0. 8538762
    • Requirement for Xist in X chromosome inactivation. GD Penny GF Kay SA Sheardown S Rastan N Brockdorff, Nature 1996 379 131 137 10.1038/379131a0 8538762
    • (1996) Nature , vol.379 , pp. 131-137
    • Penny, G.D.1    Kay, G.F.2    Sheardown, S.A.3    Rastan, S.4    Brockdorff, N.5
  • 8
    • 0030895047 scopus 로고    scopus 로고
    • Long-range cis effects of ectopic X-inactivation centres on a mouse autosome
    • 10.1038/386275a0. 9069285
    • Long-range cis effects of ectopic X-inactivation centres on a mouse autosome. JT Lee R Jaenisch, Nature 1997 386 275 279 10.1038/386275a0 9069285
    • (1997) Nature , vol.386 , pp. 275-279
    • Lee, J.T.1    Jaenisch, R.2
  • 9
    • 0033637110 scopus 로고    scopus 로고
    • A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation
    • 10.1016/S1097-2765(00)80248-8. 10882105
    • A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation. A Wutz R Jaenisch, Mol Cell 2000 5 695 705 10.1016/S1097-2765(00)80248-8 10882105
    • (2000) Mol Cell , vol.5 , pp. 695-705
    • Wutz, A.1    Jaenisch, R.2
  • 10
    • 0032898752 scopus 로고    scopus 로고
    • Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis
    • 10.1093/hmg/8.2.195. 9931327
    • Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis. SM Duthie TB Nesterova EJ Formstone AM Keohane BM Turner SM Zakian N Brockdorff, Hum Mol Genet 1999 8 195 204 10.1093/hmg/8.2.195 9931327
    • (1999) Hum Mol Genet , vol.8 , pp. 195-204
    • Duthie, S.M.1    Nesterova, T.B.2    Formstone, E.J.3    Keohane, A.M.4    Turner, B.M.5    Zakian, S.M.6    Brockdorff, N.7
  • 11
    • 33646743585 scopus 로고    scopus 로고
    • Attenuated spread of X-inactivation in an X; Autosome translocation
    • 10.1073/pnas.0602021103. 16679409
    • Attenuated spread of X-inactivation in an X; autosome translocation. BC Popova T Tada N Takagi N Brockdorff TB Nesterova, Proc Natl Acad Sci USA 2006 103 7706 7711 10.1073/pnas.0602021103 16679409
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 7706-7711
    • Popova, B.C.1    Tada, T.2    Takagi, N.3    Brockdorff, N.4    Nesterova, T.B.5
  • 12
    • 0032929080 scopus 로고    scopus 로고
    • H4 acetylation, XIST RNA and replication timing are coincident and define x; Autosome boundaries in two abnormal X chromosomes
    • 10.1093/hmg/8.2.377. 9931347
    • H4 acetylation, XIST RNA and replication timing are coincident and define x; autosome boundaries in two abnormal X chromosomes. AM Keohane AL Barlow J Waters D Bourn BM Turner, Hum Mol Genet 1999 8 377 383 10.1093/hmg/8.2.377 9931347
    • (1999) Hum Mol Genet , vol.8 , pp. 377-383
    • Keohane, A.M.1    Barlow, A.L.2    Waters, J.3    Bourn, D.4    Turner, B.M.5
  • 13
    • 0036898974 scopus 로고    scopus 로고
    • Unbalanced X; Autosome translocations provide evidence for sequence specificity in the association of XIST RNA with chromatin
    • 10.1093/hmg/11.25.3157. 12444100
    • Unbalanced X; autosome translocations provide evidence for sequence specificity in the association of XIST RNA with chromatin. LL Hall CM Clemson M Byron K Wydner JB Lawrence, Hum Mol Genet 2002 11 3157 3165 10.1093/hmg/11.25. 3157 12444100
    • (2002) Hum Mol Genet , vol.11 , pp. 3157-3165
    • Hall, L.L.1    Clemson, C.M.2    Byron, M.3    Wydner, K.4    Lawrence, J.B.5
  • 14
    • 0032231864 scopus 로고    scopus 로고
    • The spreading of X inactivation into autosomal material of an x; Autosome translocation: Evidence for a difference between autosomal and X-chromosomal DNA
    • 10.1086/301922. 9634520
    • The spreading of X inactivation into autosomal material of an x; autosome translocation: evidence for a difference between autosomal and X-chromosomal DNA. WM White HF Willard DL Van Dyke DJ Wolff, Am J Hum Genet 1998 63 20 28 10.1086/301922 9634520
    • (1998) Am J Hum Genet , vol.63 , pp. 20-28
    • White, W.M.1    Willard, H.F.2    Van Dyke, D.L.3    Wolff, D.J.4
  • 15
    • 0020987354 scopus 로고
    • Mammalian X-chromosome inactivation
    • 10.1146/annurev.ge.17.120183.001103. 6364959
    • Mammalian X-chromosome inactivation. SM Gartler AD Riggs, Annu Rev Genet 1983 17 155 190 10.1146/annurev.ge.17.120183.001103 6364959
    • (1983) Annu Rev Genet , vol.17 , pp. 155-190
    • Gartler, S.M.1    Riggs, A.D.2
  • 16
    • 0031820331 scopus 로고    scopus 로고
    • X-chromosome inactivation: A repeat hypothesis
    • 10.1159/000014969. 9678347
    • X-chromosome inactivation: a repeat hypothesis. MF Lyon, Cytogenet Cell Genet 1998 80 133 137 10.1159/000014969 9678347
    • (1998) Cytogenet Cell Genet , vol.80 , pp. 133-137
    • Lyon, M.F.1
  • 17
    • 17344370076 scopus 로고    scopus 로고
    • The impact of L1 retrotransposons on the human genome
    • 10.1038/ng0598-19. 9590283
    • The impact of L1 retrotransposons on the human genome. HH Kazazian Jr JV Moran, Nat Genet 1998 19 19 24 10.1038/ng0598-19 9590283
    • (1998) Nat Genet , vol.19 , pp. 19-24
    • Kazazian Jr., H.H.1    Moran, J.V.2
  • 18
    • 0034612238 scopus 로고    scopus 로고
    • Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: The Lyon repeat hypothesis
    • 10.1073/pnas.97.12.6634. 10841562
    • Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis. JA Bailey L Carrel A Chakravarti EE Eichler, Proc Natl Acad Sci USA 2000 97 6634 6639 10.1073/pnas.97.12.6634 10841562
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6634-6639
    • Bailey, J.A.1    Carrel, L.2    Chakravarti, A.3    Eichler, E.E.4
  • 20
    • 33749407724 scopus 로고    scopus 로고
    • Genomic environment predicts expression patterns on the human inactive X chromosome
    • 10.1371/journal.pgen.0020151. 17009873
    • Genomic environment predicts expression patterns on the human inactive X chromosome. L Carrel C Park S Tyekucheva J Dunn F Chiaromonte KD Makova, PLoS Genet 2006 2 151 10.1371/journal.pgen.0020151 17009873
    • (2006) PLoS Genet , vol.2 , pp. 5151
    • Carrel, L.1    Park, C.2    Tyekucheva, S.3    Dunn, J.4    Chiaromonte, F.5    Makova, K.D.6
  • 21
    • 0141730245 scopus 로고    scopus 로고
    • X inactivation-specific methylation of LINE-1 elements by DNMT3B: Implications for the Lyon repeat hypothesis
    • 10.1093/hmg/ddg268. 12925568
    • X inactivation-specific methylation of LINE-1 elements by DNMT3B: implications for the Lyon repeat hypothesis. RS Hansen, Hum Mol Genet 2003 12 2559 2567 10.1093/hmg/ddg268 12925568
    • (2003) Hum Mol Genet , vol.12 , pp. 2559-2567
    • Hansen, R.S.1
  • 22
    • 2442667886 scopus 로고    scopus 로고
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
    • 10.1038/nature02536. 15152245
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. JS Han ST Szak JD Boeke, Nature 2004 429 268 274 10.1038/nature02536 15152245
    • (2004) Nature , vol.429 , pp. 268-274
    • Han, J.S.1    Szak, S.T.2    Boeke, J.D.3
  • 23
    • 58149479791 scopus 로고    scopus 로고
    • Genome Environment Browser (GEB): A dynamic browser for visualising high-throughput experimental data in the context of genome features
    • 10.1186/1471-2105-9-501. 19038045
    • Genome Environment Browser (GEB): a dynamic browser for visualising high-throughput experimental data in the context of genome features. D Huntley YA Tang TB Nesterova S Butcher N Brockdorff, BMC Bioinformatics 2008 9 501 10.1186/1471-2105-9-501 19038045
    • (2008) BMC Bioinformatics , vol.9 , pp. 501
    • Huntley, D.1    Tang, Y.A.2    Nesterova, T.B.3    Butcher, S.4    Brockdorff, N.5
  • 24
    • 11944272607 scopus 로고
    • Differential distribution of long and short interspersed element sequences in the mouse genome: Chromosome karyotyping by fluorescence in situ hybridization
    • 10.1073/pnas.87.19.7757. 2170987
    • Differential distribution of long and short interspersed element sequences in the mouse genome: chromosome karyotyping by fluorescence in situ hybridization. AL Boyle SG Ballard DC Ward, Proc Natl Acad Sci USA 1990 87 7757 7761 10.1073/pnas.87.19.7757 2170987
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 7757-7761
    • Boyle, A.L.1    Ballard, S.G.2    Ward, D.C.3
  • 25
    • 50849096091 scopus 로고    scopus 로고
    • Analysis of transposon interruptions suggests selection for L1 elements on the X chromosome
    • 18769724
    • Analysis of transposon interruptions suggests selection for L1 elements on the X chromosome. G Abrusan J Giordano PE Warburton, PLoS Genet 2008 4 1000172 18769724
    • (2008) PLoS Genet , vol.4 , pp. 51000172
    • Abrusan, G.1    Giordano, J.2    Warburton, P.E.3
  • 26
    • 0042706143 scopus 로고    scopus 로고
    • A stain upon the silence: Genes escaping X inactivation
    • 10.1016/S0168-9525(03)00177-X. 12902161
    • A stain upon the silence: genes escaping X inactivation. CJ Brown JM Greally, Trends Genet 2003 19 432 438 10.1016/S0168-9525(03)00177-X 12902161
    • (2003) Trends Genet , vol.19 , pp. 432-438
    • Brown, C.J.1    Greally, J.M.2
  • 27
    • 10044298120 scopus 로고    scopus 로고
    • Ubiquitinated proteins including uH2A on the human and mouse inactive X chromosome: Enrichment in gene rich bands
    • 10.1007/s00412-004-0325-1. 15616869
    • Ubiquitinated proteins including uH2A on the human and mouse inactive X chromosome: enrichment in gene rich bands. KP Smith M Byron CM Clemson JB Lawrence, Chromosoma 2004 113 324 335 10.1007/s00412-004-0325-1 15616869
    • (2004) Chromosoma , vol.113 , pp. 324-335
    • Smith, K.P.1    Byron, M.2    Clemson, C.M.3    Lawrence, J.B.4
  • 28
    • 0035504192 scopus 로고    scopus 로고
    • Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription
    • 10.1093/nar/29.21.4493. 11691937
    • Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription. F Yu N Zingler G Schumann WH Stratling, Nucleic Acids Res 2001 29 4493 4501 10.1093/nar/29.21.4493 11691937
    • (2001) Nucleic Acids Res , vol.29 , pp. 4493-4501
    • Yu, F.1    Zingler, N.2    Schumann, G.3    Stratling, W.H.4
  • 29
    • 33748363713 scopus 로고    scopus 로고
    • L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells
    • 10.1038/nsmb1141. 16936727
    • L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells. N Yang HH Kazazian Jr, Nat Struct Mol Biol 2006 13 763 771 10.1038/nsmb1141 16936727
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 763-771
    • Yang, N.1    Kazazian Jr., H.H.2
  • 30
    • 33746076412 scopus 로고    scopus 로고
    • A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced
    • 10.1101/gad.380906. 16912274
    • A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced. J Chaumeil P Le Baccon A Wutz E Heard, Genes Dev 2006 20 2223 2237 10.1101/gad.380906 16912274
    • (2006) Genes Dev , vol.20 , pp. 2223-2237
    • Chaumeil, J.1    Le Baccon, P.2    Wutz, A.3    Heard, E.4
  • 32
    • 33644994701 scopus 로고    scopus 로고
    • Gene-rich and gene-poor chromosomal regions have different locations in the interphase nuclei of cold-blooded vertebrates
    • 10.1007/s00412-005-0039-z. 16404627
    • Gene-rich and gene-poor chromosomal regions have different locations in the interphase nuclei of cold-blooded vertebrates. C Federico C Scavo CD Cantarella S Motta S Saccone G Bernardi, Chromosoma 2006 115 123 128 10.1007/s00412-005-0039-z 16404627
    • (2006) Chromosoma , vol.115 , pp. 123-128
    • Federico, C.1    Scavo, C.2    Cantarella, C.D.3    Motta, S.4    Saccone, S.5    Bernardi, G.6
  • 34
    • 0025992469 scopus 로고
    • Promoter traps in embryonic stem cells: A genetic screen to identify and mutate developmental genes in mice
    • 10.1101/gad.5.9.1513. 1653172
    • Promoter traps in embryonic stem cells: a genetic screen to identify and mutate developmental genes in mice. G Friedrich P Soriano, Genes Dev 1991 5 1513 1523 10.1101/gad.5.9.1513 1653172
    • (1991) Genes Dev , vol.5 , pp. 1513-1523
    • Friedrich, G.1    Soriano, P.2
  • 35
    • 0030990991 scopus 로고    scopus 로고
    • Disruption of overlapping transcripts in the ROSA beta geo 26 gene trap strain leads to widespread expression of beta-galactosidase in mouse embryos and hematopoietic cells
    • 10.1073/pnas.94.8.3789. 9108056
    • Disruption of overlapping transcripts in the ROSA beta geo 26 gene trap strain leads to widespread expression of beta-galactosidase in mouse embryos and hematopoietic cells. BP Zambrowicz A Imamoto S Fiering LA Herzenberg WG Kerr P Soriano, Proc Natl Acad Sci USA 1997 94 3789 3794 10.1073/pnas.94.8.3789 9108056
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 3789-3794
    • Zambrowicz, B.P.1    Imamoto, A.2    Fiering, S.3    Herzenberg, L.A.4    Kerr, W.G.5    Soriano, P.6
  • 37
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments. GK Smyth, Stat Appl Genet Mol Biol 2004 3 3
    • (2004) Stat Appl Genet Mol Biol , vol.3 , pp. 3
    • Smyth, G.K.1


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