Preliminary quantitative proteomic characterization of glaucomatous rat retinal ganglion cells

Experimental Eye Research

Volumn 91, Issue 1, 2010, Pages 107-110

  Crabb, John W ^a,b   Yuan, Xianglin ^a   Dvoriantchikova, Galina ^c   Ivanov, Dmitry ^c   Crabb, John S ^a   Shestopalov, Valery I ^c,d  

^a LERNER RESEARCH INSTITUTE   (United States)

^b CLEVELAND CLINIC LERNER COLLEGE OF MEDICINE   (United States)

^c UNIVERSITY OF MIAMI MILLER SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF MIAMI MILLER SCHOOL OF MEDICINE   (United States)

Author keywords

Experimental glaucoma; ITRAQ technology; Mass spectrometry; Quantitative proteomics; Retinal ganglion cells

Indexed keywords

ALDEHYDE REDUCTASE; PROTHYMOSIN ALPHA; THYMOSIN; UBIQUITIN; VOLTAGE DEPENDENT ANION CHANNEL 2;

AMINO ACID SEQUENCE; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; EXPERIMENTAL RAT; FEASIBILITY STUDY; GLAUCOMA; IN VIVO STUDY; INTRAOCULAR PRESSURE; LIQUID CHROMATOGRAPHY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; PROTEOMICS; QUANTITATIVE STUDY; RAT; RETINA GANGLION CELL; TANDEM MASS SPECTROMETRY;

ANIMALS; CELL SEPARATION; CHROMATOGRAPHY, LIQUID; DISEASE MODELS, ANIMAL; EYE PROTEINS; GLAUCOMA; INTRAOCULAR PRESSURE; PROTEOME; PROTEOMICS; RATS; RATS, SPRAGUE-DAWLEY; RETINAL GANGLION CELLS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TONOMETRY, OCULAR;

EID: 77953361322     PISSN: 00144835     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.exer.2010.04.004     Document Type: Article

References (24)

1. Bhattacharya S.K., Crabb J.S., Bonilha V.L., Gu X., Takahara H., Crabb J.W. Proteomics implicates peptidyl arginine deiminase 2 and optic nerve citrullination in glaucoma pathogenesis. Invest. Ophthalmol. Vis. Sci. 2006, 47:2508-2514.
2. Bhattacharya S.K., Rockwood E.J., Smith S.D., Bonilha V.L., Crabb J.S., Kuchtey R.W., Robertson N.G., Peachey N.S., Morton C.C., Crabb J.W. Proteomics reveal cochlin deposits associated with glaucomatous trabecular meshwork. J. Biol. Chem. 2005, 280:6080-6084.
3. Blackshaw S., Harpavat S., Trimarchi J., Cai L., Huang H., Kuo W.P., Weber G., Lee K., Fraioli R.E., Cho S.H., Yung R., Asch E., Ohno-Machado L., Wong W.H., Cepko C.L. Genomic analysis of mouse retinal development. PLoS Biol. 2004, 2:E247.
4. Crabb J.W., Miyagi M., Gu X., Shadrach K., West K.A., Sakaguchi H., Kamei M., Hasan A., Yan L., Rayborn M.E., Salomon R.G., Hollyfield J.G. Drusen proteome analysis: an approach to the etiology of age-related macular degeneration. Proc. Natl. Acad. Sci. U.S.A 2002, 99:14682-14687.
5. Crabb J.W., West K.A., Dodson W.S., Hulmes J.D. Amino acid analysis. Current Protocols in Protein Science, Unit 11.9, Supplement 7: 1997, John Wiley & Sons, Inc., p 11.09.01-11.09.42. J.E. Coligan, H.L. Ploegh, J.A. Smith, D.W. Speicher (Eds.).
6. Hollows F.C., Graham P.A. Intra-ocular pressure, glaucoma and glaucoma suspects in defined population. Br. J. Ophthalmol. 1966, 50:570-586.
7. Huusko P., Ponciano-Jackson D., Wolf M., Kiefer J.A., Azorsa D.O., Tuzmen S., Weaver D., Robbins C., Moses T., Allinen M., Hautaniemi S., Chen Y., Elkahloun A., Basik M., Bova G.S., Bubendorf L., Lugli A., Sauter G., Schleutker J., Ozcelik H., Elowe S., Pawson T., Trent J.M., Carpten J.D., Kallioniemi O.P., Mousses S. Nonsense-mediated decay microarray analysis identifies mutations of EPHB2 in human prostate cancer. Nat. Genet. 2004, 36:979-983.
8. Ivanov D., Dvoriantchikova G., Nathanson L., McKinnon S.J., Shestopalov V.I. Microarray analysis of gene expression in adult retinal ganglion cells. FEBS Lett. 2006, 580:331-335.
9. Levkovitch-Verbin H., Quigley H.A., Martin K.R., Valenta D., Baumrind L.A., Pease M.E. Translimbal laser photocoagulation to the trabecular meshwork as a model of glaucoma in rats. Invest. Ophthalmol. Vis. Sci. 2002, 43:402-410.
10. Meyer-Franke A., Kaplan M.R., Pfrieger F.W., Barres B.A. Characterization of the signaling interactions that promote the survival and growth of developing retinal ganglion cells in culture. Neuron 1995, 15:805-819.
11. Ng K.P., Gugiu B., Renganathan K., Davies M.W., Gu X., Crabb J.S., Kim S.R., Rozanowska M.B., Bonilha V.L., Rayborn M.E., Salomon R.G., Sparrow J.R., Boulton M.E., Hollyfield J.G., Crabb J.W. Retinal pigment epithelium lipofuscin proteomics. Mol. Cell Proteomics 2008, 7:1397-1405.
12. Pavlidis M., Fischer D., Thanos S. Photoreceptor degeneration in the RCS rat attenuates dendritic transport and axonal regeneration of ganglion cells. Invest. Ophthalmol. Vis. Sci. 2000, 41:2318-2328.
13. Quigley H.A., Broman A.T. The number of people with glaucoma worldwide in 2010 and 2020. Br. J. Ophthalmol. 2006, 90:262-267.
14. Quigley H.A., Nickells R.W., Kerrigan L.A., Pease M.E., Thibault D.J., Zack D.J. Retinal ganglion cell death in experimental glaucoma and after axotomy occurs by apoptosis. Invest. Ophthalmol. Vis. Sci. 1995, 36:774-786.
15. Rorabacher D.B. Statistical treatment for rejection of deviant values: critical values of Dixon's " Q" parameter and related subrange ratios at the 95% confidence interval. Anal. Chem. 1991, 63:139-146.
16. Surgucheva I., Shestopalov V.I., Surguchov A. Effect of gamma-synuclein silencing on apoptotic pathways in retinal ganglion cells. J. Biol. Chem. 2008, 283:36377-36385.
17. Tezel G., Yang X., Cai J. Proteomic identification of oxidatively modified retinal proteins in a chronic pressure-induced rat model of glaucoma. Invest. Ophthalmol. Vis. Sci. 2005, 46:3177-3187.
18. Tian Q., Stepaniants S.B., Mao M., Weng L., Feetham M.C., Doyle M.J., Yi E.C., Dai H., Thorsson V., Eng J., Goodlett D., Berger J.P., Gunter B., Linseley P.S., Stoughton R.B., Aebersold R., Collins S.J., Hanlon W.A., Hood L.E. Integrated genomic and proteomic analyses of gene expression in mammalian cells. Mol. Cell Proteomics 2004, 3:960-969.
19. Wang J.T., Kunzevitzky N.J., Dugas J.C., Cameron M., Barres B.A., Goldberg J.L. Disease gene candidates revealed by expression profiling of retinal ganglion cell development. J. Neurosci. 2007, 27:8593-8603.
20. Wiggs J.L. Genetic etiologies of glaucoma. Arch. Ophthalmol. 2007, 125:30-37.
21. Wirtz M.K., Samples J.R. Glaucoma genetics. Glaucoma: Science and practice 2003, 12-21. Thieme, New York. J.C. Morrison, I.P. Pollack (Eds.).
22. Yang X., Luo C., Cai J., Pierce W.M., Tezel G. Phosphorylation-dependent interaction with 14-3-3 in the regulation of bad trafficking in retinal ganglion cells. Invest. Ophthalmol. Vis. Sci. 2008, 49:2483-2494.
23. Yuan X., Gu X., Crabb J.S., Yue X., Shadrach K., Hollyfield J.G., Crabb J.W. Quantitative proteomics: comparison of the macular Bruch's membrane/choroid complex from age-related macular degeneration and normal eyes. Mol. Cell Proteomics 2010, 9:1031-1046.
24. Zhan X., Du Y., Crabb J.S., Gu X., Kern T.S., Crabb J.W. Targets of tyrosine nitration in diabetic rat retina. Mol. Cell Proteomics 2008, 7:864-874.