Phylogeny of the coral pathogen Vibrio coralliilyticus

Environmental Microbiology Reports

Volumn 2, Issue 1, 2010, Pages 172-178

  Pollock, F Joseph ^a,b,c,d   Wilson, Bryan ^a   Johnson, Wesley R ^b,c   Morris, Pamela J ^b,c   Willis, Bette L ^d   Bourne, David G ^a  

^a AUSTRALIAN INSTITUTE OF MARINE SCIENCE   (Australia)

^b School of Business   (United States)

^c Hollings Marine Laboratory   (United States)

^d JAMES COOK UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ANTHOZOA; BACTERIA (MICROORGANISMS); BIVALVIA; VIBRIO; VIBRIO CORALLIILYTICUS;

EID: 77953321897     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/j.1758-2229.2009.00131.x     Document Type: Article

References (48)

1. Aeby, G.S. (2005) Outbreak of coral disease in the Northwest Hawaiian Islands. Coral Reefs 24: 481.
2. Aeby, G.S., Work, T., Fenner, D., and DiDonato, E. (2008) Coral and crustose coralline algae disease on the reefs of American Samoa. In Proceedings of the 11th Annual International Coral Reef Symposium. Fort Lauderdale, FL, USA.
3. Ben-Haim, Y., and Rosenberg, E. (2002) A novel Vibrio sp. pathogen of the coral Pocillopora damicornis. Mar Biol 141: 47-55.
4. Ben-Haim, Y., Zicherman-Keren, M., and Rosenberg, E. (2003) Temperature-regulated bleaching and lysis of the coral Pocillopora damicornis by the novel pathogen Vibrio coralliilyticus. Appl Environ Microbiol 69: 4236-4242.
5. Bourne, D.G., and Munn, C.B. (2005) Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef. Environ Microbiol 7: 1162-1174.
6. Bourne, D.G., Garren, M., Work, T.M., Rosenberg, E., Smith, G.W., and Harvell, C.W. (2009) Microbial disease and the coral holobiont. Trends Microbiol 17: 554-562.
7. Bruen, T., Philippe, H., and Bryant, D. (2006) A quick and robust statistical test to detect the presence of recombination. Genetics 172: 2665-2681.
8. Chimetto, L.A., Brocchi, M., Thompson, C.C., Martins, R.C.R., Ramos, H.R., and Thompson, F.L. (2008) Vibrios dominate as culturable nitrogen fixing bacteria of the Brazilian coral Mussismilia hispida. Syst Appl Microbiol 31: 312-319.
9. Claus, H., Maiden, M.C.J., Maag, R., Frosch, M., and Vogel, U. (2002) Many carried meningococci lack the genes required for capsule synthesis and transport. Microbiology 148: 1813-1819.
10. Denamur, E., Picard, B., Decoux, G., Denis, J.B., and Elion, J. (1993) The absence of correlation between allozyme and rrn RFLP analysis indicates a high gene flow rate within human clinical Pseudomonas aeruginosa isolates. FEMS Microbiol Lett 110: 275-280.
11. Dolan-Livengood, J.M., Miller, Y.K., Martin, L.E., Urwin, R., and Stephens, D.S. (2003) Genetic basis for nongroupable Neisseria meningitidis. J Infect Dis 187: 1616-1628.
12. Enright, M.C., Robinson, D.A., Randle, G., Feil, E.J., Grundmann, H., and Spratt, B.G. (2002) The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA). Proc Natl Acad Sci USA 99: 7687-7692.
13. Excoffier, L., and Smouse, P. (1994) Using allele frequencies and geographic subdivision to reconstruct gene genealogies within a species: molecular variance parsimony. Genetics 136: 343-359.
14. Falush, D., Wirth, T., Linz, B., Pritchard, J.K., Stephens, M., Kidd, M., et al. (2003) Traces of human migrations in Helicobacter pylori populations. Science 299: 1582-1585.
15. Feil, E.J., Holmes, E.C., Bessen, D.E., Chan, M.S., Day, N.P.J., Enright, M.C., et al. (2001) Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences. Proc Natl Acad Sci USA 98: 182-187.
16. Godoy, D., Randle, G., Simpson, A.J., Aanensen, D.M., Pitt, T.L., Kinoshita, R., and Spratt, B.G. (2003) Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41: 2068-2079.
17. Goudet, J., Raymond, M., de Meeüs, T., and Rousset, F. (1996) Testing differentiation in diploid populations. Genetics 144: 1933-1940.
18. Higgins, D.G., Thompson, J.D., and Gibson, T.J. (1996) Using CLUSTAL for multiple sequence alignments. Methods Enzymol 266: 383-402.
19. Hobbs, J.-P.A., and Frisch, A.J. (2010) Coral disease in the Indian Ocean: taxonomic susceptibility, spatial distribution and the role of host density on the prevalence of white syndrome. Dis Aquat Org (in press): doi: 10.3354/dao02181.
20. Huson, D.H., and Bryant, D. (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267.
21. Jolley, K.A., Kalmusova, J., Feil, E.J., Gupta, S., Musilek, M., Kriz, P., and Maiden, M.C.J. (2000) Carried meningococci in the Czech Republic: a diverse recombining population. J Clin Microbiol 38: 4492-4498.
22. Jolley, K.A., Wilson, D.J., Kriz, P., Mcvean, G., and Maiden, M.C.J. (2004) The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitides. Mol Biol Evol 22: 562-569.
23. Jukes, T.H., and Cantor, C.R. (1969) Evolution of protein molecules. In Mammalian protein metabolism. Munro, H.H. (ed.). London, UK: Academic Press, pp. 21-132.
24. Kreiswirth, B., Kornblum, J., Arbeit, R.D., Eisner, W., Maslow, J.N., McGeer, A., et al. (1993) Evidence for a clonal origin of methicillin resistance in Staphylococcus aureus. Science 259: 227-230.
25. Kushmaro, A., Banin, E., Loya, Y., Stackebrandt, E., and Rosenberg, E. (2001) Vibrio shiloi sp. nov., the causative agent of bleaching of the coral Oculina patagonica. Int J Syst Evol Microbiol 51: 1383-1388.
26. Long, S.C., and Holmes, T.H. (2009) Comparative marine biodiversity of the Rowley Shoals 2007: benthic assemblages. Marine Science Program Data Report Series: MSPDRR7. Marine Science Program, Department of Environment and Conservation, Perth, WA, Australia, p. 59.
27. McGee, L., McDougal, L., Zhou, J., Spratt, B.G., Tenover, F.C., George, R., et al. (2001) Nomenclature of major antimicrobial-resistant clones of Streptococcus pneumoniae defined by the pneumococcal molecular epidemiology network. J Clin Microbiol 39: 2565-2571.
28. Maiden, M.C.J. (2006) Multilocus sequence typing of bacteria. Annu Rev Microbiol 60: 561-588.
29. Maiden, M.C.J., Bygraves, J.A., Feil, E., Morelli, G., Russell, J.E., Urwin, R., et al. (1998) Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 95: 3140-3145.
30. Marchesi, J.R., Sato, T., Weightman, A.J., Martin, T.A., Fry, J.C., Hiom, S.J., and Wade, W.G. (1998) Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microbiol 64: 795-799.
31. Miyoshi, S., Sultan, S.Z., Yasuno, Y., and Shinoda, S. (2006) Growth phase-dependent production of a toxic metalloprotease by Vibrio vulnificus. Toxin Rev 25: 19-30.
32. Nei, M., and Kumar, S. (2000) Evolutionary change of DNA sequences. In Molecular Evolution and Phylogenetics. New York, NY, USA: Oxford University Press, p. 333.
33. Nhung, P.H., Shah, M.M., Okhusu, K., Noda, M., Hata, H., Sun, X.S., et al. (2007) The dnaJ gene as a novel phylogenetic marker for identification of Vibrio species. Syst Appl Microbiol 30: 309-315.
34. Olson, N.D., Ainsworth, T.D., Gates, R.D., and Takabayashi, M. (2009) Diazotrophic bacteria associated with Hawaiian Montipora corals: diversity and abundance in correlation with symbiotic dinoflagellates. J Exp Mar Biol Ecol 371: 140-146.
35. Pollard, A.J., and Maiden, M.C. (2003) Epidemic meningococcal disease in sub-Saharan Africa-towards a sustainable solution? Lanet Infect Dis 3: 68-70.
36. Raymond, M., and Rousset, F. (1994) GenePop. Version 3.0. Institut des Sciences de l'Evolution. Montpellier, France: Université de Montpellier.
37. Ritchie, K.B. (2006) Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol Prog Ser 322: 1-14.
38. Rosenberg, E., Kellogg, C.A., and Rohwer, F. (2007) Coral microbiology. Oceanography 20: 146-154.
39. Salaun, L., Audibert, C., Le Lay, G., Burucoa, C., Fauchere, J.L., and Picard, B. (1998) Panmictic structure of Helicobacter pylori demonstrated by the comparative study of six genetic markers. FEMS Microbiol Lett 161: 231-239.
40. Shnit-Orland, M., and Kushmaro, A. (2009) Coral mucus-associated bacteria: a possible first line of defense. FEMS Microbiol Ecol 67: 371-380.
41. Sussman, M., Willis, B.L., Victor, S., and Bourne, D.G. (2008) Coral pathogens identified for white syndrome (WS) epizootics in the Indo-Pacific. PLoS ONE 3: e2393.
42. Sussman, M., Mieog, J.C., Doyle, J., Victor, S., Willis, B.L., and Bourne, D.G. (2009) Vibrio zinc-metalloprotease causes photoinactivation of coral endosymbionts and coral tissue lesions. PLoS ONE 4: e4511.
43. Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
44. Thompson, F.L., Hoste, B., Vandemeulebroecke, K., and Swings, J. (2001) Genomic diversity amongst Vibrio isolates from different sources determined by fluorescent amplified fragment length polymorphism. Syst Appl Microbiol 24: 520-538.
45. Thompson, F.L., Gevers, D., Thompson, C.C., Dawyndt, P., Naser, S., Hoste, B., Munn, C.B., and Swings, J. (2005) Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Appl Environ Microbiol 71: 5107-5115.
46. Wang, J., Sasaki, T., Maehara, Y., Nakao, H., Tsuchiya, T., and Miyoshi, S. (2008) Variation of extracellular proteases produced by Vibrio vulnificus clinical isolates: genetic diversity of the metalloprotease gene (vvp), and serine protease secretion by vvp-negative strains. Microb Pathog 44: 494-500.
47. Watanabe, H., Miyoshi, S., Kawase, T., Tomochika, K., and Shinoda, S. (2004) High growing ability of Vibrio vulnificus biotype 1 is essential for production of a toxic metalloprotease causing systemic diseases in humans. Microb Pathog 36: 117-123.
48. Willis, B.E., Page, C.A., and Dinsdale, E.A. (2004) Coral disease on the great barrier reef. In Coral Health and Disease. Rosenberg, E., and Loya, Y. (eds). Berlin, Germany: Springer-Verlag Publishing, pp. 69-104.