Painting a perspective on the landscape of nucleosome positioning

Journal of Biomolecular Structure and Dynamics

Volumn 27, Issue 6, 2010, Pages 795-802

  Johnson, Steven M ^a  

^a BRIGHAM YOUNG UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN; CYTOARCHITECTURE; DNA SEQUENCE; EXPERIMENTATION; IN VIVO STUDY; NUCLEOSOME; PAINTING; PRIORITY JOURNAL; REVIEW;

EID: 77953311351     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/073911010010524946     Document Type: Article

References (32)

1. Johnson, S. M., Tan, F. J., McCullough, H. L., Riordan, D. P., and Fire, A. Z., 2006. Genome Res, 16:1505–1516.
2. Valouev, A., Ichikawa, J., Tonthat, T., Stuart, J., Ranade, S., Peckham, H., Zeng, K., Malek, J. A., Costa, G., McKernan, K., Sidow, A., Fire, A., and Johnson, S. M., 2008. Genome Res, 18:1051–1063.
3. Luger, K., Rechsteiner, T. J., and Richmond, T. J., 1999. Methods Enzymol, 304:3–19.
4. Thåström, A., Lowary, P. T., Widlund, H. R., Cao, H., Kubista, M., and Widom, J., 1999. J Mol Biol, 288:213–229.
5. Zhang, Y., Moqtaderi, Z., Rattner, B. P., Euskirchen, G., Snyder, M., Kadonaga, J. T., Liu, X. S., and Struhl, K., 2009. Nature Structural & Molecular Biology, 16:847–852.
6. Meersseman, G., Pennings, S., and Bradbury, E. M., 1992. EMBO J, 11:2951–2959.
7. Sakaue, T., and Yoshikawa, K., 2001. Physical Rev Letters, 87:078105
8. Kaplan, N., Moore, I. K., Fondufe-Mittendorf, Y., Gossett, A. J., Tillo, D., Field, Y., LeProust, E. M., Hughes, T. R., Lieb, J. D., Widom, J., and Segal, E., 2009. Nature, 19:362–366.
9. Segal, E., and Widom, J., 2009. Curr Opin Struct Biol, 19:65–71.
10. Muyldermans, S., and Travers, A. A., 1994. J Mol Biol, 235:855–870.
11. Satchwell, D. C., Drew, H. R., and Travers, A. A., 1986. J Mol Biol, 191:659–675.
12. Travers, A. A., and Muyldermans, S. V., 1996. J Mol Biol, 257:486–491.
13. Ioshikhes, I., Bolshoy, A., Derenshteyn, K., Borodovsky, M., and Trifonov, E. N., 1996. J Mol Biol, 262:129–139.
14. Salih, F., Salih, B., and Trifonov, E. N., 2008. J Biomol Struct Dyn, 26:273–281.
15. Gabdank, I., Barash, D., and Trifonov, E. N., 2009. J Biomol Struct Dyn, 26:403–412.
16. Brower-Toland, B. D., Smit, C. L., Yeh, R. C., Lis, J. T., Peterson, C. L., and Wang, M. D., 2002. Proc Natl Acad Sci, 99:1960–1965.
17. Mihardja, S., Spakowit, A. J., Zhang, Y., and Bustamante, C., 2006. Proc Natl Acad Sci, 103:15871–15876.
18. Dong, F., Hansen, J. C., and van Holde, K. E., 1990. Proc Natl Acad Sci, 87:5724–5728.
19. Segal, E., Fondufe-Mittendorf, Y., Chen, L., Thåström, A., Field, Y., Moore, I. K., Wang, J. P., and Widom, J., 2006. Nature, 443:750–752.
20. Peckham, H. E., Thurman, R. E., Fu, Y., Stamatoyannopoulos, J. A., Noble, W. S., Struhl, K., and Weng, Z., 2007. Genome Res, 17:1170–1177.
21. Albert, I., Mavrich, T. N., Tomsho, L. P., Qi, J., Zanton, S. J., Schuster, S. C., and Pugh, B. F., 2007. Nature, 446:572–576.
22. Lee, W., Tillo, D., Bray, N., Morse, R. H., Davis, R. W., Hughes, T. R., and Nislow, C., 2007. Nat Genet, 39:1235–1244.
23. Schones, D. E., Cui, K., Cuddapah, S., Roh, T. Y., Barski, A., Wang, Z., Wei, G., and Zhao, K., 2008. Cell, 132:887–898.
24. Mavrich, T. N., Jiang, C., Ioshikhes, I. P., Li, X., Venters, B. J., Zanton, S. J., Tomsho, L. P., Qi, J., Glaser, R. L., Schuster, S. C., Gilmour, D. S., Albert, I., and Pugh, B. F., 2008. Nature, 453:358–362.
25. Spies, N., Nielsen, C. B., Padgett, R. A., and Burge, C. B., 2009. Mol Cell, 36:245–254.
26. Fu, Y., Sinha, M., Peterson, C. L., and Weng, Z., 2008. PLoS Genet, 4:e1000138
27. Fu, Y., Sinha, M., Peterson, C. L., and Weng, Z., 2008. PLoS Genet, 4:e1000138
28. Cuddapah, S., Jothi, R., Schones, D. E., Roh, T. Y., Cui, K., and Zhao, K., 2009. Genome Res, 19:24–32.
29. Kornberg, R., 1981. Nature, 292:579–580.
30. Partensky, P. D., and Narlikar, G. J., 2009. J Mol Biol, 391:12–25.
31. Struhl, K., 1985. Prot Natl Acad Sci, 82:8419–8423.
32. th Conversation. June 16–20, Albany, New York, USA;.