Heat shock factor 1 binds to and transcribes satellite II and III sequences at several pericentromeric regions in heat-shocked cells

Experimental Cell Research

Volumn 316, Issue 11, 2010, Pages 1845-1855

  Eymery, Angéline ^a   Souchier, Catherine ^a   Vourc'h, Claire ^a   Jolly, Caroline ^a  

^a UNIV GRENOBLE ALPES   (France)

Author keywords

Heat shock; Heterochromatin; HSF1; Satellite sequences; Transcription

Indexed keywords

HEAT SHOCK TRANSCRIPTION FACTOR 1;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CELL STRESS; CENTROMERE; CHROMOSOME 14; CONTROLLED STUDY; EMBRYO; GENETIC ASSOCIATION; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN SYNTHESIS; SATELLITE CELL; TRANSCRIPTOMICS;

EID: 77953232382     PISSN: 00144827     EISSN: 10902422     Source Type: Journal    
DOI: 10.1016/j.yexcr.2010.02.002     Document Type: Article

References (46)

1. Lindquist S. The heat-shock response. Annu. Rev. Biochem. 1986, 55:1151-1191.
2. Hirsch C., Gauss R., Sommer T. Coping with stress: cellular relaxation techniques. Trends Cell. Biol. 2006, 16:657-663.
3. Nadeau S.I., Landry J. Mechanisms of activation and regulation of the heat shock-sensitive signaling pathways. Adv. Exp. Med. Biol. 2007, 594:100-113.
4. Kampinga H.H. Chaperones in preventing protein denaturation in living cells and protecting against cellular stress. Handb. Exp. Pharmacol. 2006, 172:1-42.
5. Liberek K., Lewandowska A., Zietkiewicz S. Chaperones in control of protein disaggregation. EMBO J. 2008, 27:328-335.
6. Pirkkala L., Nykänen P., Sistonen L. Roles of the heat shock transcription factors in regulation of the heat shock response and beyond. FASEB J. 2001, 15:1118-1131.
7. Voellmy R. On mechanisms that control heat shock transcription factor activity in metazoan cells. Cell Stress Chaperones 2004, 9:122-133.
8. Cotto J., Fox S., Morimoto R. HSF1 granules: a novel stress-induced nuclear compartment of human cells. J. Cell Sci. 1997, 110:2925-2934.
9. Jolly C., Michelland S., Rocchi M., Robert-Nicoud M., Vourc'h C. Analysis of the transcriptional activity of amplified genes in tumor cells by fluorescence in situ hybridization. Hum. Genet. 1997, 101:81-87.
10. Jolly C., Konecny L., Kutskova Y.A., Cotto J.J., Morimoto R.I., Vourc'h C. In vivo binding of HSF1 to human chromosome 9 heterochromatin during stress. J. Cell. Biol. 2002, 156:775-781.
11. Jolly C., Metz A., Govin J., Vigneron M., Turner B.M., Khochbin S., Vourc 'h C. Stress-induced transcription of satellite III repeats. J. Cell. Biol. 2004, 164:25-33.
12. Rizzi N., Denegri M., Chiodi I., Corioni M., Valgardsdottir R., Cobianchi F., Riva S., Biamonti G. Transcriptional activation of a constitutive heterochromatic domain of the human genome in response to heat shock. Mol. Biol. Cell 2004, 15:543-551.
13. Metz A., Soret J., Vourc'h C., Tazi J., Jolly C. A key role for stress-induced satellite III transcripts in the relocalization of splicing factors into nuclear stress granules. J. Cell. Sci. 2004, 117:4551-4558.
14. Chiodi I., Corioni M., Giordano M., Valgardsdottir R., Ghigna C., Cobianchi F., Xu R.M., Riva S., Biamonti G. RNA recognition motif 2 directs the recruitment of SF2/ASF to nuclear stress bodies. Nucleic Acids Res. 2004, 32:4127-4136.
15. Biamonti G. Nuclear stress bodies: a heterochromatin affair?. Nat. Rev. Mol. Cell Biol. 2004, 5:493-498.
16. Jolly C., Lakhotia S.C. Human sat III and Drosophila hsrΩ transcripts: a common paradigm for regulation of nuclear RNA processing in stressed cells. Nucleic Acids Res. 2006, 34:5508-5514.
17. Eymery A., Callanan M., Vourc'h C. The secret message of heterochromatin: new insights from mechanisms and function of centromeric and pericentric repeat sequence transcription. Int. J. Dev. Biol. 2009, 53:259-268.
18. Denegri M., Moralli D., Rocchi M., Biggiogera M., Raimondi E., Cobianchi F., De Caroli L., Riva S., Biamonti G. Human chromosomes 9, 12, and 15 contain the nucleation sites of stress-induced nuclear bodies. Mol. Biol. Cell 2002, 13:2069-2079.
19. Antonacci R., Marzella R., Finelli P., Lonoce A., Forabosco A., Archidiacono N., Rocchi M. A panel of subchromosomal painting libraries representing over 300 regions of the human genome. Cytogenet. Cell Genet. 1995, 68:25-32.
20. Jolly C., Vourc'h C., Robert-Nicoud M., Morimoto R.I. Intron-independent association of splicing factors with active genes. J. Cell. Biol. 1999, 145:1133-1143.
21. Tagarro I., Fernández-Peralta A.M., González-Aguilera J.J. Chromosomal localization of human satellites 2 and 3 by a FISH method using oligonucleotides as probes. Hum. Genet. 1994, 93:383-388.
22. Eymery A., Horard B., El Atifi-Borel M., Fourel G., Berger F., Vitte A.-L., Van den Broeck A., Brambilla E., Fournier A., Callanan M., Gazzeri S., Khochbin S., Rousseaux S., Gilson E., Vourc'h C. A transcriptomic analysis of human centromeric and pericentric sequences in normal and tumor cells. Nucleic Acids Res. 2009, 37:6340-6354.
23. Kroeger P.E., Sarge K.D., Morimoto R.I. Mouse heat shock transcription factors 1 and 2 prefer a trimeric binding site but interact differently with the HSP70 heat shock element. Mol. Cell. Biol. 1993, 13:3370-3383.
24. Frommer M., Paul C., Vincent P.C. Localisation of satellite DNA sequences on human metaphase chromosomes using bromodeoxyuridine-labelled probes. Chromosoma 1988, 97:11-18.
25. Antonacci R., Marzella R., Finelli P., Lonoce A., Forabosco A., Archidiacono N., Rocchi M. A panel of subchromosomal painting libraries representing over 300 regions of the human genome. Cytogenet. Cell Genet. 1995, 68:25-32.
26. Hoang A.T., Huang J., Rudra-Ganguly N., Zheng J., Powell W.C., Rabindran S.K., Wu C., Roy-Burman P. A novel association between the human heat shock transcription factor 1 (HSF1) and prostate adenocarcinoma. Am. J. Pathol. 2000, 156:857-864.
27. Cen H., Zheng S., Fang Y.M., Tang X.P., Dong Q. Induction of HSF1 expression is associated with sporadic colorectal cancer. World J. Gastroenterol. 2004, 10:3122-3126.
28. Dai C., Whitesell L., Rogers A.B., Lindquist S. Heat shock factor 1 is a powerful multifaceted modifier of carcinogenesis. Cell 2007, 130:1005-1018.
29. Holmberg C.I., Tran S.E., Eriksson J.E., Sistonen L. Multisite phosphorylation provides sophisticated regulation of transcription factors. Trends Biochem. Sci. 2002, 27:619-627.
30. Narayan A., Ji W., Zhang X.Y., Marrogi A., Graff J.R., Baylin S.B., Ehrlich M. Hypomethylation of pericentromeric DNA in breast adenocarcinomas. Int. J. Cancer 1998, 77:833-838.
31. Ehrlich M. DNA methylation in cancer: too much, but also too little. Oncogene 2002, 21:5400-5413.
32. Feinberg A.P., Tycko B. The history of cancer epigenetics. Nat. Rev. Cancer 2004, 4:143-153.
33. Wilson A.S., Power B.E., Molloy P.L. DNA hypomethylation and human diseases. Biochim. Biophys. Acta 2007, 1775:138-162.
34. Murray J.I., Whitfield M.L., Trinklein N.D., Myers R.M., Brown P.O., Botstein D. Diverse and specific gene expression responses to stresses in cultured human cells. Mol. Biol. Cell 2004, 15:2361-2374.
35. Moyzis R.K., Albright K.L., Bartholdi M.F., Cram L.S., Deaven L.L., Hildebrand C.E., Joste N.E., Longmire J.L., Meyne J., Schwarzacher-Robinson T. Human chromosome-specific repetitive DNA sequences: novel markers for genetic analysis. Chromosoma 1987, 95:375-386.
36. Cooke H.J., Hindley J. Cloning of human satellite III DNA: different components are on different chromosomes. Nucleic Acids Res. 1979, 6:3177-3197.
37. Amin J., Ananthan J., Voellmy R. Key features of heat shock regulatory elements. Mol. Cell. Biol. 1988, 8:3761-3769.
38. Bobrow M., Madan K., Pearson P.L. Staining of some specific regions of human chromosomes, particularly the secondary constriction of No. 9. Nat. New Biol. 1972, 238:122-124.
39. Hungerford D.A. Chromosome structure and function in man: I. Pachytene mapping in the male: improved methods and general discussion of initial results. Cytogenetics 1971, 10:23-32.
40. Mitchell A.R., Ambros P., McBeath S., Chandley A.C. Molecular hybridization to meiotic chromosomes in man reveals sequence arrangement on the No. 9 chromosome and provides clues to the nature of "parameres". Cytogenet. Cell Genet. 1986, 41:89-95.
41. Heslop-Harrison J.S., Leitch A.R., Schwarzacher T., Smith J.B., Atkinson M.D., Bennett M.D. The volumes and morphology of human chromosomes in mitotic reconstructions. Hum. Genet. 1989, 84:27-34.
42. Gilbert N., Boyle S., Fiegler H., Woodfine K., Carter N.P., Bickmore W.A. Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers. Cell 2004, 118:555-566.
43. Gross D.S., Adams C.C., Lee S., Stentz B. A critical role for heat shock transcription factor in establishing a nucleosome-free region over the TATA-initiation site of the yeast HSP82 heat shock gene. EMBO J. 1993, 12:3931-3945.
44. Inouye S., Fujimoto M., Nakamura T., Takaki E., Hayashida N., Hai T., Nakai A. Heat shock transcription factor 1 opens chromatin structure of interleukin-6 promoter to facilitate binding of an activator or a repressor. J. Biol. Chem. 2007, 282:33210-33217.
45. Girton J.R., Johansen K.M. Chromatin structure and the regulation of gene expression: the lessons of PEV in Drosophila. Adv. Genet. 2008, 61:1-43.
46. Ebert A., Lein S., Schotta G., Reuter G. Histone modification and the control of heterochromatic gene silencing in Drosophila. Chromosome Res. 2006, 14:377-392.