메뉴 건너뛰기




Volumn 156, Issue 6, 2010, Pages 1758-1771

Genome-wide analysis of DNA turnover and gene expression in stationary-phase Saccharomyces cerevisiae

Author keywords

[No Author keywords available]

Indexed keywords

BROXURIDINE; COMPLEMENTARY DNA;

EID: 77953215126     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.035519-0     Document Type: Article
Times cited : (10)

References (48)
  • 1
    • 3843127604 scopus 로고    scopus 로고
    • Defects arising from whole-genome duplications in Saccharomyces cerevisiae
    • Andalis, A. A., Storchova, Z., Styles, C., Galitski, T., Pellman, D. & Fink, G. R. (2004). Defects arising from whole-genome duplications in Saccharomyces cerevisiae. Genetics 167, 1109-1121.
    • (2004) Genetics , vol.167 , pp. 1109-1121
    • Andalis, A.A.1    Storchova, Z.2    Styles, C.3    Galitski, T.4    Pellman, D.5    Fink, G.R.6
  • 3
    • 0033529926 scopus 로고    scopus 로고
    • Passage through stationary phase advances replicative aging in Saccharomyces cerevisiae
    • Ashrafi, K., Sinclair, D., Gordon, J. I. & Guarente, L. (1999). Passage through stationary phase advances replicative aging in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 96, 9100-9105.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 9100-9105
    • Ashrafi, K.1    Sinclair, D.2    Gordon, J.I.3    Guarente, L.4
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol 57, 289-300.
    • (1995) J R Stat Soc Series B Stat Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 0036470433 scopus 로고    scopus 로고
    • Replication licensing - Defining the proliferative state?
    • Blow, J. J. & Hodgson, B. (2002). Replication licensing - defining the proliferative state? Trends Cell Biol 12, 72-78.
    • (2002) Trends Cell Biol , vol.12 , pp. 72-78
    • Blow, J.J.1    Hodgson, B.2
  • 6
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad, B. M., Irizarry, R. A., Astrand, M. & Speed, T. P. (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19, 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 8
    • 0032796606 scopus 로고    scopus 로고
    • Chance favors the prepared genome
    • Caporale, L. H. (1999). Chance favors the prepared genome. Ann N Y Acad Sci 870, 1-21.
    • (1999) Ann N Y Acad Sci , vol.870 , pp. 1-21
    • Caporale, L.H.1
  • 9
    • 0034007195 scopus 로고    scopus 로고
    • Mutation is modulated: Implications for evolution
    • Caporale, L. H. (2000). Mutation is modulated: implications for evolution. Bioessays 22, 388-395.
    • (2000) Bioessays , vol.22 , pp. 388-395
    • Caporale, L.H.1
  • 10
    • 0242523875 scopus 로고    scopus 로고
    • Natural selection and the emergence of a mutation phenotype: An update of the evolutionary synthesis considering mechanisms that affect genome variation
    • Caporale, L. H. (2003). Natural selection and the emergence of a mutation phenotype: an update of the evolutionary synthesis considering mechanisms that affect genome variation. Annu Rev Microbiol 57, 467-485.
    • (2003) Annu Rev Microbiol , vol.57 , pp. 467-485
    • Caporale, L.H.1
  • 12
    • 24044496456 scopus 로고    scopus 로고
    • The stationary phase model of aging in yeast for the study of oxidative stress and age-related neurodegeneration
    • Chen, Q., Ding, Q. & Keller, J. N. (2005). The stationary phase model of aging in yeast for the study of oxidative stress and age-related neurodegeneration. Biogerontology 6, 1-13.
    • (2005) Biogerontology , vol.6 , pp. 1-13
    • Chen, Q.1    Ding, Q.2    Keller, J.N.3
  • 13
    • 0030561285 scopus 로고    scopus 로고
    • Cell cycle control of replication initiation in eukaryotes
    • Chevalier, S. & Blow, J. J. (1996). Cell cycle control of replication initiation in eukaryotes. Curr Opin Cell Biol 8, 815-821.
    • (1996) Curr Opin Cell Biol , vol.8 , pp. 815-821
    • Chevalier, S.1    Blow, J.J.2
  • 14
    • 0343953085 scopus 로고    scopus 로고
    • Long-distance control of origin choice and replication timing in the human b-globin locus are independent of the locus control region
    • Cimbora, D. M., Schubeler, D., Reik, A., Hamilton, J., Francastel, C., Epner, E. M. & Groudine, M. (2000). Long-distance control of origin choice and replication timing in the human b-globin locus are independent of the locus control region. Mol Cell Biol 20, 5581-5591.
    • (2000) Mol Cell Biol , vol.20 , pp. 5581-5591
    • Cimbora, D.M.1    Schubeler, D.2    Reik, A.3    Hamilton, J.4    Francastel, C.5    Epner, E.M.6    Groudine, M.7
  • 15
    • 34447328702 scopus 로고    scopus 로고
    • Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin
    • Dai, J., Xie, W., Brady, T. L., Gao, J. & Voytas, D. F. (2007). Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin. Mol Cell 27, 289-299.
    • (2007) Mol Cell , vol.27 , pp. 289-299
    • Dai, J.1    Xie, W.2    Brady, T.L.3    Gao, J.4    Voytas, D.F.5
  • 16
    • 0029065571 scopus 로고
    • Association of increased spontaneous mutation rates with high levels of transcription in yeast
    • Datta, A. & Jinks-Robertson, S. (1995). Association of increased spontaneous mutation rates with high levels of transcription in yeast. Science 268, 1616-1619.
    • (1995) Science , vol.268 , pp. 1616-1619
    • Datta, A.1    Jinks-Robertson, S.2
  • 17
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi, J. L., Iyer, V. R. & Brown, P. O. (1997). Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278, 680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 18
    • 34447308744 scopus 로고    scopus 로고
    • Stress management: How cells take control of their transposons
    • Ebina, H. & Levin, H. L. (2007). Stress management: how cells take control of their transposons. Mol Cell 27, 180-181.
    • (2007) Mol Cell , vol.27 , pp. 180-181
    • Ebina, H.1    Levin, H.L.2
  • 19
    • 0030727954 scopus 로고    scopus 로고
    • Relevance of 'adaptive' mutations arising in non-dividing cells of microorganisms to agerelated changes in mutant phenotypes of neurons
    • Finch, C. E. & Goodman, M. F. (1997). Relevance of 'adaptive' mutations arising in non-dividing cells of microorganisms to agerelated changes in mutant phenotypes of neurons. Trends Neurosci 20, 501-507.
    • (1997) Trends Neurosci , vol.20 , pp. 501-507
    • Finch, C.E.1    Goodman, M.F.2
  • 20
    • 0033390088 scopus 로고    scopus 로고
    • Mechanisms of stationary phase mutation: A decade of adaptive mutation
    • Foster, P. L. (1999). Mechanisms of stationary phase mutation: a decade of adaptive mutation. Annu Rev Genet 33, 57-88.
    • (1999) Annu Rev Genet , vol.33 , pp. 57-88
    • Foster, P.L.1
  • 21
    • 0003144810 scopus 로고    scopus 로고
    • Stationary phase in the yeast Saccharomyces cerevisiae
    • Edited by S. Hohmann & W. H. Mager. Heidelberg: Springer
    • Fuge, K. & Werner-Washburne, M. (1997). Stationary phase in the yeast Saccharomyces cerevisiae. In Yeast Stress Responses: pp. 53-69. Edited by S. Hohmann & W. H. Mager. Heidelberg: Springer.
    • (1997) Yeast Stress Responses , pp. 53-69
    • Fuge, K.1    Werner-Washburne, M.2
  • 22
    • 0036728274 scopus 로고    scopus 로고
    • The genomics of yeast responses to environmental stress and starvation
    • Gasch, A. P. & Werner-Washburne, M. (2002). The genomics of yeast responses to environmental stress and starvation. Funct Integr Genomics 2, 181-192.
    • (2002) Funct Integr Genomics , vol.2 , pp. 181-192
    • Gasch, A.P.1    Werner-Washburne, M.2
  • 24
    • 0034566572 scopus 로고    scopus 로고
    • The budding yeast, Saccharomyces cerevisiae, as a model for aging research: A critical review
    • Gershon, H. & Gershon, D. (2000). The budding yeast, Saccharomyces cerevisiae, as a model for aging research: a critical review. Mech Ageing Dev 120, 1-22.
    • (2000) Mech Ageing Dev , vol.120 , pp. 1-22
    • Gershon, H.1    Gershon, D.2
  • 26
    • 5644270239 scopus 로고    scopus 로고
    • Non-homologous end joining dependency of c-irradiation-induced adaptive frameshift mutation formation in cell cycle-arrested yeast cells
    • Heidenreich, E. & Eisler, H. (2004). Non-homologous end joining dependency of c-irradiation-induced adaptive frameshift mutation formation in cell cycle-arrested yeast cells. Mutat Res 556, 201-208.
    • (2004) Mutat Res , vol.556 , pp. 201-208
    • Heidenreich, E.1    Eisler, H.2
  • 27
    • 0035945707 scopus 로고    scopus 로고
    • Adaptive reversions of a frameshift mutation in arrested Saccharomyces cerevisiae cells by simple deletions in mononucleotide repeats
    • Heidenreich, E. & Wintersberger, U. (2001). Adaptive reversions of a frameshift mutation in arrested Saccharomyces cerevisiae cells by simple deletions in mononucleotide repeats. Mutat Res 473, 101-107.
    • (2001) Mutat Res , vol.473 , pp. 101-107
    • Heidenreich, E.1    Wintersberger, U.2
  • 28
    • 0037543988 scopus 로고    scopus 로고
    • Non-homologous end joining as an important mutagenic process in cell cycle-arrested cells
    • Heidenreich, E., Novotny, R., Kneidinger, B., Holzmann, V. & Wintersberger, U. (2003). Non-homologous end joining as an important mutagenic process in cell cycle-arrested cells. EMBO J 22, 2274-2283.
    • (2003) EMBO J , vol.22 , pp. 2274-2283
    • Heidenreich, E.1    Novotny, R.2    Kneidinger, B.3    Holzmann, V.4    Wintersberger, U.5
  • 29
    • 0003526162 scopus 로고    scopus 로고
    • Hohmann, S. & Mager, W. H. (editors) 1st edn. Heidelberg: Springer
    • Hohmann, S. & Mager, W. H. (editors) (1997). Yeast Stress Responses, 1st edn. Heidelberg: Springer.
    • (1997) Yeast Stress Responses
  • 31
    • 0028158736 scopus 로고
    • Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for region-specific markers
    • Kandpal, R. P., Kandpal, G. & Weissman, S. M. (1994). Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for region-specific markers. Proc Natl Acad Sci U S A 91, 88-92.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 88-92
    • Kandpal, R.P.1    Kandpal, G.2    Weissman, S.M.3
  • 33
    • 34547789312 scopus 로고    scopus 로고
    • Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication
    • Kim, N., Abdulovic, A. L., Gealy, R., Lippert, M. J. & Jinks- Robertson, S. (2007). Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication. DNA Repair (Amst) 6, 1285-1296.
    • (2007) DNA Repair (Amst) , vol.6 , pp. 1285-1296
    • Kim, N.1    Abdulovic, A.L.2    Gealy, R.3    Lippert, M.J.4    Jinks- Robertson, S.5
  • 34
    • 0035312721 scopus 로고    scopus 로고
    • + yeast strains
    • Lengronne, A., Pasero, P., Bensimon, A. & Schwob, E. (2001). Monitoring S phase progression globally and locally using BrdU incorporation in TK+ yeast strains. Nucleic Acids Res 29, 1433-1442. (Pubitemid 32288489)
    • (2001) Nucleic Acids Research , vol.29 , Issue.7 , pp. 1433-1442
    • Lengronne, A.1    Pasero, P.2    Bensimon, A.3    Schwob, E.4
  • 35
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl, T. (1993). Instability and decay of the primary structure of DNA. Nature 362, 709-715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 36
    • 20444365683 scopus 로고    scopus 로고
    • GOToolBox: Functional analysis of gene datasets based on Gene Ontology
    • Martin, D., Brun, C., Remy, E., Mouren, P., Thieffry, D. & Jacq, B. (2004). GOToolBox: functional analysis of gene datasets based on Gene Ontology. Genome Biol 5, R101.
    • (2004) Genome Biol , vol.5
    • Martin, D.1    Brun, C.2    Remy, E.3    Mouren, P.4    Thieffry, D.5    Jacq, B.6
  • 37
    • 0036012794 scopus 로고    scopus 로고
    • DNA repair in terminally differentiated cells
    • Nouspikel, T. & Hanawalt, P. C. (2002). DNA repair in terminally differentiated cells. DNA Repair (Amst) 1, 59-75.
    • (2002) DNA Repair (Amst) , vol.1 , pp. 59-75
    • Nouspikel, T.1    Hanawalt, P.C.2
  • 38
    • 33845214014 scopus 로고    scopus 로고
    • Transcription domain-associated repair in human cells
    • Nouspikel, T. P., Hyka-Nouspikel, N. & Hanawalt, P. C. (2006). Transcription domain-associated repair in human cells. Mol Cell Biol 26, 8722-8730.
    • (2006) Mol Cell Biol , vol.26 , pp. 8722-8730
    • Nouspikel, T.P.1    Hyka-Nouspikel, N.2    Hanawalt, P.C.3
  • 39
    • 0028095381 scopus 로고
    • Mechanisms of transcription-repair coupling and mutation frequency decline
    • Selby, C. P. & Sancar, A. (1994). Mechanisms of transcription-repair coupling and mutation frequency decline. Microbiol Rev 58, 317-329. (Pubitemid 24279095)
    • (1994) Microbiological Reviews , vol.58 , Issue.3 , pp. 317-329
    • Selby, C.P.1    Sancar, A.2
  • 41
    • 23844536533 scopus 로고    scopus 로고
    • Severe adenine starvation activates Ty1 transcription and retrotransposition in Saccharomyces cerevisiae
    • Todeschini, A. L., Morillon, A., Springer, M. & Lesage, P. (2005). Severe adenine starvation activates Ty1 transcription and retrotransposition in Saccharomyces cerevisiae. Mol Cell Biol 25, 7459-7472.
    • (2005) Mol Cell Biol , vol.25 , pp. 7459-7472
    • Todeschini, A.L.1    Morillon, A.2    Springer, M.3    Lesage, P.4
  • 42
    • 34249977861 scopus 로고    scopus 로고
    • Defining Candida albicans stationary phase by cellular and DNA replication, gene expression and regulation
    • Uppuluri, P. & Chaffin, W. L. (2007). Defining Candida albicans stationary phase by cellular and DNA replication, gene expression and regulation. Mol Microbiol 64, 1572-1586.
    • (2007) Mol Microbiol , vol.64 , pp. 1572-1586
    • Uppuluri, P.1    Chaffin, W.L.2
  • 43
    • 0036591885 scopus 로고    scopus 로고
    • SINEs and LINEs: The art of biting the hand that feeds you
    • Weiner, A. M. (2002). SINEs and LINEs: the art of biting the hand that feeds you. Curr Opin Cell Biol 14, 343-350.
    • (2002) Curr Opin Cell Biol , vol.14 , pp. 343-350
    • Weiner, A.M.1
  • 45
    • 0030068124 scopus 로고    scopus 로고
    • Destabilization of simple repetitive DNA sequences by transcription in yeast
    • Wierdl, M., Greene, C. N., Datta, A., Jinks-Robertson, S. & Petes, T. D. (1996). Destabilization of simple repetitive DNA sequences by transcription in yeast. Genetics 143, 713-721. (Pubitemid 26001091)
    • (1996) Genetics , vol.143 , Issue.2 , pp. 713-721
    • Wierdl, M.1    Greene, C.N.2    Datta, A.3    Jinks-Robertson, S.4    Petes, T.D.5
  • 46
    • 2442479591 scopus 로고    scopus 로고
    • Stress-directed adaptive mutations and evolution
    • Wright, B. E. (2004). Stress-directed adaptive mutations and evolution. Mol Microbiol 52, 643-650.
    • (2004) Mol Microbiol , vol.52 , pp. 643-650
    • Wright, B.E.1
  • 47
    • 0033608998 scopus 로고    scopus 로고
    • Hypermutation in derepressed operons of Escherichia coli K12
    • Wright, B. E., Longacre, A. & Reimers, J. M. (1999). Hypermutation in derepressed operons of Escherichia coli K12. Proc Natl Acad Sci U S A 96, 5089-5094.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 5089-5094
    • Wright, B.E.1    Longacre, A.2    Reimers, J.M.3
  • 48
    • 2442425574 scopus 로고    scopus 로고
    • Mechanisms by which transcription can regulate somatic hypermutation
    • Wright, B. E., Schmidt, K. H. & Minnick, M. F. (2004). Mechanisms by which transcription can regulate somatic hypermutation. Genes Immun 5, 176-182.
    • (2004) Genes Immun , vol.5 , pp. 176-182
    • Wright, B.E.1    Schmidt, K.H.2    Minnick, M.F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.