-
1
-
-
22244478079
-
Cellular DNA replicases: components and dynamics at the replication fork
-
Johnson A., O'Donnell M. Cellular DNA replicases: components and dynamics at the replication fork. Annu. Rev. Biochem. 2005, 74:283-315.
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 283-315
-
-
Johnson, A.1
O'Donnell, M.2
-
2
-
-
3042588011
-
Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex
-
Bowman G.D., O'Donnell M., Kuriyan J. Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex. Nature 2004, 429:724-730.
-
(2004)
Nature
, vol.429
, pp. 724-730
-
-
Bowman, G.D.1
O'Donnell, M.2
Kuriyan, J.3
-
3
-
-
65549110769
-
The mechanism of ATP-dependent primer-template recognition by a clamp loader complex
-
Simonetta K.R., Kazmirski S.L., Goedken E.R., Cantor A.J., Kelch B.A., McNally R., Seyedin S.N., Makino D.L., O'Donnell M., Kuriyan J. The mechanism of ATP-dependent primer-template recognition by a clamp loader complex. Cell 2009, 137:659-671.
-
(2009)
Cell
, vol.137
, pp. 659-671
-
-
Simonetta, K.R.1
Kazmirski, S.L.2
Goedken, E.R.3
Cantor, A.J.4
Kelch, B.A.5
McNally, R.6
Seyedin, S.N.7
Makino, D.L.8
O'Donnell, M.9
Kuriyan, J.10
-
4
-
-
0026725774
-
Processive DNA synthesis by DNA polymerase II mediated by DNA polymerase III accessory proteins
-
Bonner C.A., Stukenberg P.T., Rajagopalan M., Eritja R., O'Donnell M., McEntee K., Echols H., Goodman M.F. Processive DNA synthesis by DNA polymerase II mediated by DNA polymerase III accessory proteins. J. Biol. Chem. 1992, 267:11431-11438.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 11431-11438
-
-
Bonner, C.A.1
Stukenberg, P.T.2
Rajagopalan, M.3
Eritja, R.4
O'Donnell, M.5
McEntee, K.6
Echols, H.7
Goodman, M.F.8
-
5
-
-
0035949599
-
A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems
-
Dalrymple B.P., Kongsuwan K., Wijffels G., Dixon N.E., Jennings P.A. A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems. Proc. Natl. Acad. Sci. USA 2001, 98:11627-11632.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11627-11632
-
-
Dalrymple, B.P.1
Kongsuwan, K.2
Wijffels, G.3
Dixon, N.E.4
Jennings, P.A.5
-
6
-
-
0035902496
-
Interaction of the beta sliding clamp with MutS, ligase, and DNA polymerase I
-
Lopez de Saro F.J., O'Donnell M. Interaction of the beta sliding clamp with MutS, ligase, and DNA polymerase I. Proc. Natl. Acad. Sci. USA 2001, 98:8376-8380.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8376-8380
-
-
Lopez de Saro, F.J.1
O'Donnell, M.2
-
7
-
-
0034669125
-
All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis
-
Napolitano R., Janel-Bintz R., Wagner J., Fuchs R.P. All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis. EMBO J. 2000, 19:6259-6265.
-
(2000)
EMBO J.
, vol.19
, pp. 6259-6265
-
-
Napolitano, R.1
Janel-Bintz, R.2
Wagner, J.3
Fuchs, R.P.4
-
8
-
-
0034574554
-
The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity
-
Wagner J., Fujii S., Gruz P., Nohmi T., Fuchs R.P. The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity. EMBO Rep. 2000, 1:484-488.
-
(2000)
EMBO Rep.
, vol.1
, pp. 484-488
-
-
Wagner, J.1
Fujii, S.2
Gruz, P.3
Nohmi, T.4
Fuchs, R.P.5
-
9
-
-
9144264274
-
Defining the position of the switches between replicative and bypass DNA polymerases
-
Fujii S., Fuchs R.P. Defining the position of the switches between replicative and bypass DNA polymerases. EMBO J. 2004, 23:4342-4352.
-
(2004)
EMBO J.
, vol.23
, pp. 4342-4352
-
-
Fujii, S.1
Fuchs, R.P.2
-
10
-
-
24944543952
-
A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously
-
Indiani C., McInerney P., Georgescu R., Goodman M.F., O'Donnell M. A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously. Mol. Cell. 2005, 19:805-815.
-
(2005)
Mol. Cell.
, vol.19
, pp. 805-815
-
-
Indiani, C.1
McInerney, P.2
Georgescu, R.3
Goodman, M.F.4
O'Donnell, M.5
-
11
-
-
2942562192
-
The dynamic processivity of the T4 DNA polymerase during replication
-
Yang J., Zhuang Z., Roccasecca R.M., Trakselis M.A., Benkovic S.J. The dynamic processivity of the T4 DNA polymerase during replication. Proc. Natl. Acad. Sci. USA 2004, 101:8289-8294.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8289-8294
-
-
Yang, J.1
Zhuang, Z.2
Roccasecca, R.M.3
Trakselis, M.A.4
Benkovic, S.J.5
-
12
-
-
65549153598
-
Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase
-
Indiani C., Langston L.D., Yurieva O., Goodman M.F., O'Donnell M. Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase. Proc. Natl. Acad. Sci. USA 2009, 106:6031-6038.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 6031-6038
-
-
Indiani, C.1
Langston, L.D.2
Yurieva, O.3
Goodman, M.F.4
O'Donnell, M.5
-
13
-
-
0019223518
-
Efficient in vitro replication of double-stranded DNA templates by a purified T4 bacteriophage replication system
-
Sinha N.K., Morris C.F., Alberts B.M. Efficient in vitro replication of double-stranded DNA templates by a purified T4 bacteriophage replication system. J. Biol. Chem. 1980, 255:4290-4293.
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 4290-4293
-
-
Sinha, N.K.1
Morris, C.F.2
Alberts, B.M.3
-
14
-
-
0023646086
-
Accessory proteins bind a primed template and mediate rapid cycling of DNA polymerase III holoenzyme from Escherichia coli
-
O'Donnell M.E. Accessory proteins bind a primed template and mediate rapid cycling of DNA polymerase III holoenzyme from Escherichia coli. J. Biol. Chem. 1987, 262:16558-16565.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 16558-16565
-
-
O'Donnell, M.E.1
-
15
-
-
0028093437
-
-
An explanation for lagging strand replication: polymerase hopping among DNA sliding clamps. Cell 78, 877-887, doi: S0092-8674(94)90662-9 [pii].
-
Stukenberg, P.T., Turner, J. and O'Donnell, M. (1994) An explanation for lagging strand replication: polymerase hopping among DNA sliding clamps. Cell 78, 877-887, doi: S0092-8674(94)90662-9 [pii].
-
(1994)
-
-
Stukenberg, P.T.1
Turner, J.2
O'Donnell, M.3
-
16
-
-
58149357530
-
Replisome dynamics and use of DNA trombone loops to bypass replication blocks
-
Yao N.Y., O'Donnell M. Replisome dynamics and use of DNA trombone loops to bypass replication blocks. Mol. Biosyst. 2008, 4:1075-1084. 10.1039/b811097b.
-
(2008)
Mol. Biosyst.
, vol.4
, pp. 1075-1084
-
-
Yao, N.Y.1
O'Donnell, M.2
-
17
-
-
31844456472
-
Replication fork reactivation downstream of a blocked nascent leading strand
-
Heller R.C., Marians K.J. Replication fork reactivation downstream of a blocked nascent leading strand. Nature 2006, 439:557-562.
-
(2006)
Nature
, vol.439
, pp. 557-562
-
-
Heller, R.C.1
Marians, K.J.2
-
18
-
-
57649129186
-
-
The replisome uses mRNA as a primer after colliding with RNA polymerase. Nature 456, 762-766, doi: nature07527 [pii]10.1038/nature07527.
-
Pomerantz, R.T. and O'Donnell, M. (2008) The replisome uses mRNA as a primer after colliding with RNA polymerase. Nature 456, 762-766, doi: nature07527 [pii]10.1038/nature07527.
-
(2008)
-
-
Pomerantz, R.T.1
O'Donnell, M.2
-
19
-
-
57649139149
-
DNA polymerase delta is highly processive with proliferating cell nuclear antigen and undergoes collision release upon completing DNA
-
Langston L.D., O'Donnell M. DNA polymerase delta is highly processive with proliferating cell nuclear antigen and undergoes collision release upon completing DNA. J. Biol. Chem. 2008, 283:29522-29531.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 29522-29531
-
-
Langston, L.D.1
O'Donnell, M.2
-
20
-
-
0026698012
-
Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. II. Frequency of primer synthesis and efficiency of primer utilization control Okazaki fragment size
-
Zechner E.L., Wu C.A., Marians K.J. Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. II. Frequency of primer synthesis and efficiency of primer utilization control Okazaki fragment size. J. Biol. Chem. 1992, 267:4045-4053.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 4045-4053
-
-
Zechner, E.L.1
Wu, C.A.2
Marians, K.J.3
-
21
-
-
0032086491
-
Coordinated leading and lagging strand DNA synthesis on a minicircular template
-
Lee J., Chastain P.D., Kusakabe T., Griffith J.D., Richardson C.C. Coordinated leading and lagging strand DNA synthesis on a minicircular template. Mol. Cell. 1998, 1:1001-1010.
-
(1998)
Mol. Cell.
, vol.1
, pp. 1001-1010
-
-
Lee, J.1
Chastain, P.D.2
Kusakabe, T.3
Griffith, J.D.4
Richardson, C.C.5
-
22
-
-
33847750773
-
Architecture of the bacteriophage T4 replication complex revealed with nanoscale biopointers
-
Nossal N.G., Makhov A.M., Chastain P.D., Jones C.E., Griffith J.D. Architecture of the bacteriophage T4 replication complex revealed with nanoscale biopointers. J. Biol. Chem. 2007, 282:1098-1108.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 1098-1108
-
-
Nossal, N.G.1
Makhov, A.M.2
Chastain, P.D.3
Jones, C.E.4
Griffith, J.D.5
-
23
-
-
0032570821
-
Formation of a DNA loop at the replication fork generated by bacteriophage T7 replication proteins
-
Park K., Debyser Z., Tabor S., Richardson C.C., Griffith J.D. Formation of a DNA loop at the replication fork generated by bacteriophage T7 replication proteins. J. Biol. Chem. 1998, 273:5260-5270.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 5260-5270
-
-
Park, K.1
Debyser, Z.2
Tabor, S.3
Richardson, C.C.4
Griffith, J.D.5
-
24
-
-
31844453991
-
DNA primase acts as a molecular brake in DNA replication
-
Lee J.B., Hite R.K., Hamdan S.M., Xie X.S., Richardson C.C., van Oijen A.M. DNA primase acts as a molecular brake in DNA replication. Nature 2006, 439:621-624.
-
(2006)
Nature
, vol.439
, pp. 621-624
-
-
Lee, J.B.1
Hite, R.K.2
Hamdan, S.M.3
Xie, X.S.4
Richardson, C.C.5
van Oijen, A.M.6
-
25
-
-
38849174361
-
Single-molecule studies of fork dynamics in Escherichia coli DNA replication
-
Tanner N.A., Hamdan S.M., Jergic S., Loscha K.V., Schaeffer P.M., Dixon N.E., van Oijen A.M. Single-molecule studies of fork dynamics in Escherichia coli DNA replication. Nat. Struct. Mol. Biol. 2008, 15:998.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 998
-
-
Tanner, N.A.1
Hamdan, S.M.2
Jergic, S.3
Loscha, K.V.4
Schaeffer, P.M.5
Dixon, N.E.6
van Oijen, A.M.7
-
26
-
-
62549122138
-
Real-time single-molecule observation of rolling-circle DNA replication
-
Tanner N.A., Loparo J.J., Hamdan S.M., Jergic S., Dixon N.E., van Oijen A.M. Real-time single-molecule observation of rolling-circle DNA replication. Nucleic Acids Res. 2009, 37:e27.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Tanner, N.A.1
Loparo, J.J.2
Hamdan, S.M.3
Jergic, S.4
Dixon, N.E.5
van Oijen, A.M.6
-
27
-
-
72449204579
-
Coordinating DNA replication by means of priming loop and differential synthesis rate
-
Pandey M., Syed S., Donmez I., Patel G., Ha T., Patel S.S. Coordinating DNA replication by means of priming loop and differential synthesis rate. Nature 2009, 462:940-943.
-
(2009)
Nature
, vol.462
, pp. 940-943
-
-
Pandey, M.1
Syed, S.2
Donmez, I.3
Patel, G.4
Ha, T.5
Patel, S.S.6
-
28
-
-
69449095740
-
Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression
-
Yao N.Y., Georgescu R.E., Finkelstein J., O'Donnell M.E. Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression. Proc. Natl. Acad. Sci. USA 2009, 106:13236-13241.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 13236-13241
-
-
Yao, N.Y.1
Georgescu, R.E.2
Finkelstein, J.3
O'Donnell, M.E.4
-
29
-
-
0026709650
-
Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. V. Primase action regulates the cycle of Okazaki fragment synthesis
-
Wu C.A., Zechner E.L., Reems J.A., McHenry C.S., Marians K.J. Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. V. Primase action regulates the cycle of Okazaki fragment synthesis. J. Biol. Chem. 1992, 267:4074-4083.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 4074-4083
-
-
Wu, C.A.1
Zechner, E.L.2
Reems, J.A.3
McHenry, C.S.4
Marians, K.J.5
-
30
-
-
0023654042
-
Formation of rolling-circle molecules during phi X174 complementary strand DNA replication
-
Mok M., Marians K.J. Formation of rolling-circle molecules during phi X174 complementary strand DNA replication. J. Biol. Chem. 1987, 262:2304-2309.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 2304-2309
-
-
Mok, M.1
Marians, K.J.2
-
31
-
-
30344473311
-
Organized arrays of individual DNA molecules tethered to supported lipid bilayers
-
Graneli A., Yeykal C.C., Prasad T.K., Greene E.C. Organized arrays of individual DNA molecules tethered to supported lipid bilayers. Langmuir 2006, 22:292-299.
-
(2006)
Langmuir
, vol.22
, pp. 292-299
-
-
Graneli, A.1
Yeykal, C.C.2
Prasad, T.K.3
Greene, E.C.4
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