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Volumn 3, Issue 5, 2010, Pages 173-178

Prediction of mhc binding peptides and epitopes from coat protein of Mungbean yellow mosaic India virus-Ub05

Author keywords

Cross protection; Epitope; MHC binders; Mungbean yellow mosaic India virus; Support vector machine

Indexed keywords

BEGOMOVIRUS; CAJANUS CAJAN; MUNGBEAN YELLOW MOSAIC INDIA VIRUS;

EID: 77952815013     PISSN: None     EISSN: 0974276X     Source Type: Journal    
DOI: 10.4172/jpb.1000136     Document Type: Article
Times cited : (4)

References (36)
  • 1
    • 0023465103 scopus 로고
    • Extension of the fragment method to calculate amino acid zwitterions and side chain partition coefficients
    • Abraham DJ, Leo AJ (1987) Extension of the fragment method to calculate amino acid zwitterions and side chain partition coefficients. Proteins 2: 130-152.
    • (1987) Proteins , vol.2 , pp. 130-152
    • Abraham, D.J.1    Leo, A.J.2
  • 2
    • 0029096589 scopus 로고
    • Prediction of Binding to MHC class I molecules
    • Adams HP, Koziol JA (1995) Prediction of Binding to MHC class I molecules. J Immunol Methods 185: 181-190.
    • (1995) J Immunol Methods , vol.185 , pp. 181-190
    • Adams, H.P.1    Koziol, J.A.2
  • 3
    • 1342268087 scopus 로고    scopus 로고
    • Analysis and prediction of affinity of TAP binding peptides using cascade SVM
    • Bhasin M, Raghava GPS (2003) Analysis and prediction of affinity of TAP binding peptides using cascade SVM. Protein Sci 13: 596-607.
    • (2003) Protein Sci , vol.13 , pp. 596-607
    • Bhasin, M.1    Raghava, G.P.S.2
  • 4
    • 0034602774 scopus 로고    scopus 로고
    • Knowledge-based Analysis of Microarray Gene Expression Data Using Support Vector Machines
    • Brown M, Grundy W, Lin D, Cristianini N, Sugnet C, et al. (2000) Knowledge-based Analysis of Microarray Gene Expression Data Using Support Vector Machines. Proc Natl Acad Sci 97: 262-267.
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 262-267
    • Brown, M.1    Grundy, W.2    Lin, D.3    Cristianini, N.4    Sugnet, C.5
  • 6
    • 26844503648 scopus 로고
    • Prediction of MHC binding peptides using artificial neural networks
    • Brusic V, Rudy G, Harrison LC (1995) Prediction of MHC binding peptides using artificial neural networks. Complexity International 2.
    • (1995) Complexity International , pp. 2
    • Brusic, V.1    Rudy, G.2    Harrison, L.C.3
  • 7
    • 0031825709 scopus 로고    scopus 로고
    • Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network
    • Brusic V, Rudy G, Honeyman G, Hammer J, Harrison L (1998) Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network. Bioinformatics 14: 121-130.
    • (1998) Bioinformatics , vol.14 , pp. 121-130
    • Brusic, V.1    Rudy, G.2    Honeyman, G.3    Hammer, J.4    Harrison, L.5
  • 8
    • 0016192651 scopus 로고
    • Surface tension of amino acid solutions: A hydrophobicity scale of the amino acid residues
    • Bull HB, Breese K (1974) Surface tension of amino acid solutions: A hydrophobicity scale of the amino acid residues. Arch Biochem Biophys 161: 665-670.
    • (1974) Arch Biochem Biophys , vol.161 , pp. 665-670
    • Bull, H.B.1    Breese, K.2
  • 9
    • 33745218020 scopus 로고
    • A new virus disease of Dolichos lablab
    • Capoor SP, Varma PM (1948) A new virus disease of Dolichos lablab. Current Science 19: 248-249.
    • (1948) Current Science , vol.19 , pp. 248-249
    • Capoor, S.P.1    Varma, P.M.2
  • 11
    • 0000952885 scopus 로고
    • Understanding generates possibilities
    • De Zoeten GA, Fulton RW (1975) Understanding generates possibilities. Phytopathology 65: 221-222.
    • (1975) Phytopathology , vol.65 , pp. 221-222
    • de Zoeten, G.A.1    Fulton, R.W.2
  • 12
    • 0035014847 scopus 로고    scopus 로고
    • Multi-class protein fold recognition using support vector machines and neural networks
    • Ding CHQ, Dubchak I (2001) Multi-class protein fold recognition using support vector machines and neural networks. Bioinformatics 17: 349-358.
    • (2001) Bioinformatics , vol.17 , pp. 349-358
    • Ding, C.H.Q.1    Dubchak, I.2
  • 13
    • 0142174642 scopus 로고    scopus 로고
    • Prediction of MHC class I binding peptides, using SVMHC
    • Donnes P, Elofsson A (2002) Prediction of MHC class I binding peptides, using SVMHC. BMC Bioinformatics 3: 25.
    • (2002) BMC Bioinformatics , vol.3 , pp. 25
    • Donnes, P.1    Elofsson, A.2
  • 15
    • 0029884694 scopus 로고    scopus 로고
    • GOR method for predicting protein secondary structure from amino acid sequence
    • Garnier J, Gibrat JF, Robson B (1996) GOR method for predicting protein secondary structure from amino acid sequence. Methods Enzymol 266: 540-53.
    • (1996) Methods Enzymol , vol.266 , pp. 540-553
    • Garnier, J.1    Gibrat, J.F.2    Robson, B.3
  • 16
    • 33947253564 scopus 로고    scopus 로고
    • Prediction of Antigenic Epitopes of Neurotoxin Bmbktx1 from Mesobuthus martensii
    • Gomase VS (2006) Prediction of Antigenic Epitopes of Neurotoxin Bmbktx1 from Mesobuthus martensii. Curr Drug Discov Technol 3: 225-229.
    • (2006) Curr Drug Discov Technol , vol.3 , pp. 225-229
    • Gomase, V.S.1
  • 17
    • 77952846211 scopus 로고    scopus 로고
    • Prediction of MHC Binding Peptides and Epitopes from Groundnut Bud Necrosis Virus (GBNV)
    • Gomase VS, Kale KV, Shyamkumar K (2008) Prediction of MHC Binding Peptides and Epitopes from Groundnut Bud Necrosis Virus (GBNV). J Proteomics Bioinform 1: 188-205.
    • (2008) J Proteomics Bioinform , vol.1 , pp. 188-205
    • Gomase, V.S.1    Kale, K.V.2    Shyamkumar, K.3
  • 18
    • 0000448982 scopus 로고
    • Prediction of Protein Antigenic Determinants from Amino Acid Sequences
    • Hopp TP, Woods KR (1981) Prediction of Protein Antigenic Determinants from Amino Acid Sequences. Proc Natl Acad Sci USA 78: 3824-3828.
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 3824-3828
    • Hopp, T.P.1    Woods, K.R.2
  • 19
    • 0018784438 scopus 로고
    • Surface and inside volumes in globular proteins
    • Janin J (1979) Surface and inside volumes in globular proteins. Nature 277: 491-492.
    • (1979) Nature , vol.277 , pp. 491-492
    • Janin, J.1
  • 20
    • 0025605617 scopus 로고
    • A semi-empirical method for prediction of antigenic determinants on protein antigens
    • Kolaskar AS, Tongaonkar PC (1990) A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett 276: 172-174.
    • (1990) FEBS Lett , vol.276 , pp. 172-174
    • Kolaskar, A.S.1    Tongaonkar, P.C.2
  • 21
    • 38649127567 scopus 로고    scopus 로고
    • Identification of DNA-binding proteins using support vector machines and evolutionary profiles
    • Kumar M, Gromiha MM, Raghava GP (2007) Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinformatics 8: 463.
    • (2007) BMC Bioinformatics , vol.8 , pp. 463
    • Kumar, M.1    Gromiha, M.M.2    Raghava, G.P.3
  • 22
    • 0020475449 scopus 로고
    • A Simple Method for Displaying the Hydropathic Character of a Protein
    • Kyte J, Doolittle RF (1982) A Simple Method for Displaying the Hydropathic Character of a Protein. J Mol Biol 157: 105-132.
    • (1982) J Mol Biol , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 23
    • 33751104704 scopus 로고    scopus 로고
    • Improved method for predicting linear B-cell epitopes
    • Larsen JE, Lund O, Nielsen M (2006) Improved method for predicting linear B-cell epitopes. Immunome Res 2: 2.
    • (2006) Immunome Res , vol.2 , pp. 2
    • Larsen, J.E.1    Lund, O.2    Nielsen, M.3
  • 25
    • 0002198968 scopus 로고
    • Yellow mosaic of mung (Phaseolus aureus L.)
    • Nariani TK (1960) Yellow mosaic of mung (Phaseolus aureus L.). Ind Phytopathology 13: 24-29.
    • (1960) Ind Phytopathology , vol.13 , pp. 24-29
    • Nariani, T.K.1
  • 26
    • 0003229099 scopus 로고
    • Viral diseases of warm weather pulse crops in India
    • Nene YL (1973) Viral diseases of warm weather pulse crops in India. Plant Dis Rep 57: 463-467.
    • (1973) Plant Dis Rep , vol.57 , pp. 463-467
    • Nene, Y.L.1
  • 27
    • 0023055775 scopus 로고
    • New Hydrophilicity Scale Derived from High-Performance Liquid Chromatography Peptide Retention Data: Correlation of Predicted Surface Residues with Antigenicity and Xray-Derived Accessible Sites
    • Parker JMR, Guo D, Hodges RS (1986) New Hydrophilicity Scale Derived from High-Performance Liquid Chromatography Peptide Retention Data: Correlation of Predicted Surface Residues with Antigenicity and Xray-Derived Accessible Sites. Biochemistry 25: 5425-5431.
    • (1986) Biochemistry , vol.25 , pp. 5425-5431
    • Parker, J.M.R.1    Guo, D.2    Hodges, R.S.3
  • 28
    • 34250854082 scopus 로고    scopus 로고
    • Legume yellow mosaic viruses: Genetically isolated begomoviruses
    • Qazi J, Ilyas M, Mansoor S, Briddon, RW (2007) Legume yellow mosaic viruses: genetically isolated begomoviruses. Mol Plant Pathol 8: 343-348.
    • (2007) Mol Plant Pathol , vol.8 , pp. 343-348
    • Qazi, J.1    Ilyas, M.2    Mansoor, S.3    Briddon, R.W.4
  • 29
    • 0027914440 scopus 로고
    • Protein structure prediction
    • Robson B, Garnier J (1993) Protein structure prediction. Nature 361: 506.
    • (1993) Nature , vol.361 , pp. 506
    • Robson, B.1    Garnier, J.2
  • 30
    • 0026715034 scopus 로고
    • Peptide motifs of closely related HLA class I molecules encompass substantial differences
    • Rotzschke O, Falk K, Stevanovic S, Jung G, Rammensee H (1992) Peptide motifs of closely related HLA class I molecules encompass substantial differences. Eur J Immunol 22: 2453-2456.
    • (1992) Eur J Immunol , vol.22 , pp. 2453-2456
    • Rotzschke, O.1    Falk, K.2    Stevanovic, S.3    Jung, G.4    Rammensee, H.5
  • 31
    • 77952828349 scopus 로고
    • Natural infection of bean (Phaseolus vulgaris) by mungbean yellow mosaic virus
    • Singh RN (1979) Natural infection of bean (Phaseolus vulgaris) by mungbean yellow mosaic virus. Ind J Mycology & Plant Pathology 9: 124-126.
    • (1979) Ind J Mycology & Plant Pathology , vol.9 , pp. 124-126
    • Singh, R.N.1
  • 32
    • 4444350854 scopus 로고
    • Occurrence of soybean yellow mosaic virus in Uttar Pradesh
    • Suteri BD (1974) Occurrence of soybean yellow mosaic virus in Uttar Pradesh. Curr Sci 43: 689-690.
    • (1974) Curr Sci , vol.43 , pp. 689-690
    • Suteri, B.D.1
  • 33
    • 0028819781 scopus 로고
    • The peptide-binding motif for the human transporter associated with antigen processing
    • van Endert P M, Riganelli D, Greco G, Fleischhauer K, Sidney J, et al. (1995) The peptide-binding motif for the human transporter associated with antigen processing. J Exp Med 182:1883-1895.
    • (1995) J Exp Med , vol.182 , pp. 1883-1895
    • van Endert, P.M.1    Riganelli, D.2    Greco, G.3    Fleischhauer, K.4    Sidney, J.5
  • 34
    • 0002712493 scopus 로고
    • MYMV transmission and control in India
    • Green SK and Kim D., Taipei Taiwan: Asian Vegetable Research and Development Centre
    • Varma A, Dhar AK, Mandal B (1992) MYMV transmission and control in India. In: Mungbean Yellow Mosaic Disease (Green SK and Kim D. eds), pp.8-27, Taipei Taiwan: Asian Vegetable Research and Development Centre.
    • (1992) Mungbean Yellow Mosaic Disease , pp. 8-27
    • Varma, A.1    Dhar, A.K.2    Mandal, B.3
  • 36
    • 0022648146 scopus 로고
    • Influence of exogenous viral coat protein in the cotranslation assembly of tobacco mosaic virus (TMV) particles in vitro
    • Wilson TMA, Watkins AC (1986) Influence of exogenous viral coat protein in the cotranslation assembly of tobacco mosaic virus (TMV) particles in vitro. Virology 149: 132-135.
    • (1986) Virology , vol.149 , pp. 132-135
    • Wilson, T.M.A.1    Watkins, A.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.