Recognition of the ring-opened state of proliferating cell nuclear antigen by replication factor C promotes eukaryotic clamp-loading

Journal of the American Chemical Society

Volumn 132, Issue 21, 2010, Pages 7372-7378

  Tainer, John A ^a   McCammon, J Andrew ^b   Ivanov, Ivaylo ^c  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^c GEORGIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLAMP LOADER; DNA REPLICATIONS; ENERGY PROFILE; FREE-ENERGY LANDSCAPE; INITIAL STAGES; LOADING CYCLES; MOLECULAR MACHINES; OPEN CONFORMATION; PROLIFERATING CELL NUCLEAR ANTIGENS; REPLICATION FACTOR C; STATE TRANSITIONS; TEMPLATE JUNCTION;

ANTIGENS; DNA; FREE ENERGY; GENES; LOADERS;

LOADING;

CYCLINE; REPLICATION FACTOR C;

ARTICLE; CONFORMATIONAL TRANSITION; ENERGY; EUKARYOTE; NONHUMAN; PROTEIN CONFORMATION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; RING OPENING; SACCHAROMYCES CEREVISIAE;

CRYSTALLOGRAPHY, X-RAY; DNA REPLICATION; MOLECULAR DYNAMICS SIMULATION; PROLIFERATING CELL NUCLEAR ANTIGEN; PROTEIN CONFORMATION; REPLICATION PROTEIN C; SACCHAROMYCES CEREVISIAE;

EID: 77952796820     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja100365x     Document Type: Article

References (36)

1. Benkovic, S. J., Valentine, A. M., and Salinas, F. Annu. Rev. Biochem. 2001, 70, 181-208
2. O'donnell M., M. J. Biol. Chem. 2006, 281, 10653-10656
3. Johnson, A. and O'Donnell, M. Annu. Rev. Biochem. 2005, 74, 283-315
4. Burgers, P. M. J. Chromosoma 1998, 107, 218-227
5. Kelman, Z. Oncogene 1997, 14, 629-640
6. Krishna, T. S., Kong, X. P., Gary, S., Burgers, P. M., and Kuriyan, J. Cell 1994, 79, 1233-1243
7. Moldovan, G. L., Pfander, B., and Jentsch, S. Cell 2007, 129, 665-679
8. Dionne, I., Nookala, R. K., Jackson, S. P., Doherty, A. J., and Bell, S. D. Mol. Cell 2003, 11, 275-282
9. Chapados, B. R., Hosfield, D. J., Han, S., Qiu, J., Yelent, B., Shen, B., and Tainer, J. A. Cell 2004, 116, 39-50
10. Haracska, L., Unk, I., Prakash, L., and Prakash, S. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 6477-6482
11. Hoege, C., Pfander, B., Moldovan, G.-L., Pyrowolakis, G., and Jentsch, S. Nature 2002, 419, 135-141
12. Maga, G. and Hubscher, U. J. Cell Sci. 2003, 116, 3051-60
13. Indiani, C. and O'Donnell, M. Nat. Rev. Mol. Cell Biol. 2006, 7, 751-761
14. O'Donnell, M. and Kuriyan, J. Curr. Opin. Struct. Biol. 2006, 16, 35-41
15. Bowman, G. D., Goedken, E. R., Kazmirski, S. L., O'Donnell, M., and Kuriyan, J. FEBS Lett. 2005, 579, 863-867
16. Bowman, G. D., O'Donnell, M., and Kuriyan, J. Nature 2004, 429, 724-730
17. Duderstadt, K. E. and Berger, J. M. Crit. Rev. Biochem. Mol. Biol. 2008, 43, 163-187
18. Miyata, T., Suzuki, H., Oyama, T., Mayanagi, K., Ishino, Y., and Morikawa, K. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 13795-13800
19. Dionne, I., Brown, N. J., Woodgate, R., and Bell, S. D. Mol. Microbiol. 2008, 68, 216-222
20. Seybert, A., Singleton, M. R., Cook, N., Hall, D. R., and Wigley, D. B. EMBO J. 2006, 25, 2209-2218
21. Zhuang, Z. H., Yoder, B. L., Burgers, P. M. J., and Benkovic, S. J. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 2546-2551
22. Kazmirski, S. L., Zhao, Y. X., Bowman, G. D., O'Donnell, M., and Kuriyan, J. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 13801-13806
23. Isralewitz, B., Baudry, J., Gullingsrud, J., Kosztin, D., and Schulten, K. J. Mol. Graphics Modell. 2001, 19, 13-25
24. Darve, E., Wilson, M. A., and Pohorille, A. Mol. Simul. 2002, 28, 113-144
25. Yao, N. Y., Johnson, A., Bowman, G. D., Kuriyan, J., and O'Donnell, M. J. Biol. Chem. 2006, 281, 17528-17539
26. Yao, N., Turner, J., Kelman, Z., Stukenberg, P. T., Dean, F., Shechter, D., Pan, Z. Q., Hurwitz, J., and O'Donnell, M. Genes Cells 1996, 1, 101-113
27. Barsky, D. and Venclovas, C. Curr. Biol. 2005, 15, R989-R992
28. Sali, A. and Blundell, T. L. J. Mol. Biol. 1993, 234, 779-815
29. Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., and Klein, M. L. J. Chem. Phys. 1983, 79, 926-935
30. Case, D. A. et al. AMBER8; University of California: San Francisco, CA, 2004.
31. Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kale, L., and Schulten, K. J. Comput. Chem. 2005, 26, 1781-1802
32. Kale, L., Skeel, R., Bhandarkar, M., Brunner, R., Gursoy, A., Krawetz, N., Phillips, J., Shinozaki, A., Varadarajan, K., and Schulten, K. J. Comput. Phys. 1999, 151, 283-312
33. Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K. M., Ferguson, D. M., Spellmeyer, D. C., Fox, T., Caldwell, J. W., and Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179-5197
34. Duan, Y., Wu, C., Chowdhury, S., Lee, M. C., Xiong, G. M., Zhang, W., Yang, R., Cieplak, P., Luo, R., Lee, T., Caldwell, J., Wang, J. M., and Kollman, P. J. Comput. Chem. 2003, 24, 1999-2012
35. Tuckerman, M., Berne, B. J., and Martyna, G. J. J. Chem. Phys. 1992, 97, 1990-2001
36. Chipot, C. and Henin, J. J. Chem. Phys. 2005, 123, 244906