-
2
-
-
0037062561
-
Amyloid-like features of polyglutamine aggregates and their assembly kinetics
-
Chen, S., Berthelier, V., Hamilton, J. B., O'Nuallain, B., Wetzel, R 2002. Amyloid-like features of polyglutamine aggregates and their assembly kinetics. Biochemistry 41, 7391-7399.
-
(2002)
Biochemistry
, vol.41
, pp. 7391-7399
-
-
Chen, S.1
Berthelier, V.2
Hamilton, J.B.3
O'Nuallain, B.4
Wetzel, R.5
-
4
-
-
7144253143
-
Truncated N-terminal fragments of huntingtin with expanded glutamine repeats form nuclear and cytoplasmic aggregates in cell culture
-
Cooper, J. K., Schilling, G., Peters, M. F., Herring, W. J., Sharp, A. H., Kaminsky, Z., Masone, J., Khan, F. A., Delanoy, M., Borchelt, D. R., Dawson, V. L., Dawson, T. M., Ross, C. A. 1998. Truncated N-terminal fragments of huntingtin with expanded glutamine repeats form nuclear and cytoplasmic aggregates in cell culture. Human Molecular Genetics 7, 783-790.
-
(1998)
Human Molecular Genetics
, vol.7
, pp. 783-790
-
-
Cooper, J.K.1
Schilling, G.2
Peters, M.F.3
Herring, W.J.4
Sharp, A.H.5
Kaminsky, Z.6
Masone, J.7
Khan, F.A.8
Delanoy, M.9
Borchelt, D.R.10
Dawson, V.L.11
Dawson, T.M.12
Ross, C.A.13
-
5
-
-
0033600124
-
The length of polyglutamine tract, its level of expression, the rate of degradation, and the transglutaminase activity influence the formation of intracellular aggregates
-
de Cristofaro, T., Affaitati, A., Cariello, L., Avvedimento, E. V., Varrone, S. 1999. The length of polyglutamine tract, its level of expression, the rate of degradation, and the transglutaminase activity influence the formation of intracellular aggregates. Biochemical and Biophysical Research Communications 260, 150-158.
-
(1999)
Biochemical and Biophysical Research Communications
, vol.260
, pp. 150-158
-
-
de Cristofaro, T.1
Affaitati, A.2
Cariello, L.3
Avvedimento, E.V.4
Varrone, S.5
-
6
-
-
40049091381
-
Nucleation of polyglutamine amyloid fibres modelling using molecular dynamics
-
E. Starikov, J. Lewis, and S. Tanaka (Eds.), Amsterdam, The Netherlands: Elsevier BV
-
Elliott, J., Starikov, E. B., Crawshaw, J., Claiden, P., Nilsson, L., Windle, A 2006. Nucleation of polyglutamine amyloid fibres modelling using molecular dynamics. In: Starikov, E., Lewis, J., Tanaka, S. (eds) Modern Methods for Theoretical Physical Chemistry of Biopolymers. Elsevier BV, Amsterdam, The Netherlands, 211-216.
-
(2006)
Modern Methods for Theoretical Physical Chemistry of Biopolymers
, pp. 211-216
-
-
Elliott, J.1
Starikov, E.B.2
Crawshaw, J.3
Claiden, P.4
Nilsson, L.5
Windle, A.6
-
7
-
-
0032568502
-
Huntingtin aggregation monitored by dynamic light scattering
-
Georgalis, Y., Starikov, E. B., Hollenbach, B., Lurz, R., Scherzinger, E., Saenger, W., Lehrach, H., Wanker, E. E. 1998. Huntingtin aggregation monitored by dynamic light scattering. In: Proceedings of the National Academy of Sciences of the United States of America 95, 6118-6121.
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, pp. 6118-6121
-
-
Georgalis, Y.1
Starikov, E.B.2
Hollenbach, B.3
Lurz, R.4
Scherzinger, E.5
Saenger, W.6
Lehrach, H.7
Wanker, E.E.8
-
8
-
-
0004016501
-
Comparison of simple potential functions for simulation liquid water
-
Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., Klein, M. L. 1983. Comparison of simple potential functions for simulation liquid water. The Journal of Chemical Physics 79, 926-935.
-
(1983)
The Journal of Chemical Physics
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
9
-
-
0034521981
-
Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models
-
Kollman, P. A., Massova, I., Reyes, C., Kuhn, B., Huo, S., Chong, L., Lee, M., Lee, T., Duan, Y., Wang, W., Donini, O., Cieplak, P., Srinivasan, J., Case, D. A., Cheatham, T. E. III 2000. Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Accounts of Chemical Research 33, 889-897.
-
(2000)
Accounts of Chemical Research
, vol.33
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
Cieplak, P.12
Srinivasan, J.13
Case, D.A.14
Cheatham, T.E.I.15
-
10
-
-
0027480960
-
A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes
-
MacDonald, M. E. et al. (The Huntington's Disease Collaborative Research Group). 1993. A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes. Cell 72, 971-983.
-
(1993)
Cell
, vol.72
, pp. 971-983
-
-
MacDonald, M.E.1
-
11
-
-
33646794342
-
Polyglutamine repeats and β-helix structure: Molecular dynamics study
-
Merlino, A., Esposito, L., Vitagliano, L 2006. Polyglutamine repeats and β-helix structure: Molecular dynamics study. Proteins 63, 918-927.
-
(2006)
Proteins
, vol.63
, pp. 918-927
-
-
Merlino, A.1
Esposito, L.2
Vitagliano, L.3
-
12
-
-
34447532605
-
-
Molecular Operating Environment, Canada: Montreal
-
Molecular Operating Environment, 2006. Chemical Computing Group, Montreal, Canada.
-
(2006)
Chemical Computing Group
-
-
-
13
-
-
40049106859
-
Molecular dynamics simulation study on the structural stabilities of polyglutamine peptides
-
Ogawa, H., Nakano, M., Watanabe, H., Starikov, E. B., Rothstein, S. M., Tanaka, S 2008. Molecular dynamics simulation study on the structural stabilities of polyglutamine peptides. Computational Biology and Chemistry 32, 102-110.
-
(2008)
Computational Biology and Chemistry
, vol.32
, pp. 102-110
-
-
Ogawa, H.1
Nakano, M.2
Watanabe, H.3
Starikov, E.B.4
Rothstein, S.M.5
Tanaka, S.6
-
14
-
-
0029633186
-
AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules
-
Pearlman, D. A., Case, D. A., Caldwell, J. W., Ross, W. S., Cheatham, T. E. III, DeBolt, S., Ferguson, D., Seibel, G., Kollman, P. 1995. AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules. Computer Physics Communications 91, 1-41.
-
(1995)
Computer Physics Communications
, vol.91
, pp. 1-41
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham III, T.E.5
DeBolt, S.6
Ferguson, D.7
Seibel, G.8
Kollman, P.9
-
15
-
-
0028283985
-
Glutamine repeats as polar zippers: their possible role in inherited neurodegenerative diseases
-
Perutz, M. F., Johnson, T., Suzuki, M., Finch, J. T. 1994. Glutamine repeats as polar zippers: their possible role in inherited neurodegenerative diseases. In: Proceedings of the National Academy of Sciences of the United States of America 91, 5355-5358.
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, pp. 5355-5358
-
-
Perutz, M.F.1
Johnson, T.2
Suzuki, M.3
Finch, J.T.4
-
16
-
-
0037117519
-
Amyloid fibers are water-filled nanotubes
-
Perutz, M. F., Finch, J. T., Berriman, J., Lesk, A 2002. Amyloid fibers are water-filled nanotubes. In: Proceedings of the National Academy of Sciences of the United States of America 99, 5591-5595.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 5591-5595
-
-
Perutz, M.F.1
Finch, J.T.2
Berriman, J.3
Lesk, A.4
-
17
-
-
84883288228
-
-
PyMOL viewer v0. 99. DeLano Scientific LLC, South San Francisco, USA
-
PyMOL viewer v0. 99. DeLano Scientific LLC, South San Francisco, USA.
-
-
-
-
18
-
-
0029997090
-
Phenotypic characterization of individuals with 30-40 CAG repeats in the Huntington disease (HD) gene reveals HD cases with 36 repeats and apparently normal elderly individuals with 36-39 repeats
-
Rubinsztein, D. C., Leggo, J., Coles, R., Almqvist, E., Biancalana, V., Cassiman, J. J., Chotai, K., Connarty, M., Crauford, D., Curtis, A., Curtis, D., Davidson, M. J., Differ, A. M., Dode, C., Dodge, A., Frontali, M., Ranen, N. G., Stine, O. C., Sherr, M., Abbott, M. H., Franz, M. L., Graham, C. A., Harper, P. S., Hedreen, J. C., Jackson, A., Kaplan, J. C., Losekoot, M., MacMillan, J. C., Morrison, P., Trottier, Y., Novelletto, A., Simpson, S. A., Theilmann, J., Whittaker, J. L., Folstein, S. E., Ross, C. A., Hayden, M. R. 1996. Phenotypic characterization of individuals with 30-40 CAG repeats in the Huntington disease (HD) gene reveals HD cases with 36 repeats and apparently normal elderly individuals with 36-39 repeats. American Journal of Human Genetics 59, 16-22.
-
(1996)
American Journal of Human Genetics
, vol.59
, pp. 16-22
-
-
Rubinsztein, D.C.1
Leggo, J.2
Coles, R.3
Almqvist, E.4
Biancalana, V.5
Cassiman, J.J.6
Chotai, K.7
Connarty, M.8
Crauford, D.9
Curtis, A.10
Curtis, D.11
Davidson, M.J.12
Differ, A.M.13
Dode, C.14
Dodge, A.15
Frontali, M.16
Ranen, N.G.17
Stine, O.C.18
Sherr, M.19
Abbott, M.H.20
Franz, M.L.21
Graham, C.A.22
Harper, P.S.23
Hedreen, J.C.24
Jackson, A.25
Kaplan, J.C.26
Losekoot, M.27
MacMillan, J.C.28
Morrison, P.29
Trottier, Y.30
Novelletto, A.31
Simpson, S.A.32
Theilmann, J.33
Whittaker, J.L.34
Folstein, S.E.35
Ross, C.A.36
Hayden, M.R.37
more..
-
19
-
-
18544400323
-
Huntingtin-encoded polyglutamine expansions form amyloid-like protein aggregates in vitro and in vivo
-
Scherzinger, E., Lurz, R., Turmaine, M., Mangiarini, L., Hollenbach, B., Hasenbank, R., Bates, G. P., Davies, S. W., Lehrach, H., Wanker, E. E. 1997. Huntingtin-encoded polyglutamine expansions form amyloid-like protein aggregates in vitro and in vivo. Cell 90, 549-558.
-
(1997)
Cell
, vol.90
, pp. 549-558
-
-
Scherzinger, E.1
Lurz, R.2
Turmaine, M.3
Mangiarini, L.4
Hollenbach, B.5
Hasenbank, R.6
Bates, G.P.7
Davies, S.W.8
Lehrach, H.9
Wanker, E.E.10
-
20
-
-
0032776447
-
Peptide models for inherited neurodegenerative disorders: conformation and aggregation properties of long polyglutamine peptides with and without interruptions
-
Sharma, D., Sharma, S., Pasha, S., Brahmachari, S. K. 1999. Peptide models for inherited neurodegenerative disorders: conformation and aggregation properties of long polyglutamine peptides with and without interruptions. FEBS Letters 456, 181-185.
-
(1999)
FEBS Letters
, vol.456
, pp. 181-185
-
-
Sharma, D.1
Sharma, S.2
Pasha, S.3
Brahmachari, S.K.4
-
21
-
-
26444575834
-
Polyglutamine homopolymers having 8-45 residues form slablike beta-crystallite assemblies
-
Sharma, D., Shinchuk, L. M., Inouye, H., Wetzel, R., Kirschner, D. A 2005. Polyglutamine homopolymers having 8-45 residues form slablike beta-crystallite assemblies. Proteins 61, 398-411.
-
(2005)
Proteins
, vol.61
, pp. 398-411
-
-
Sharma, D.1
Shinchuk, L.M.2
Inouye, H.3
Wetzel, R.4
Kirschner, D.A.5
-
22
-
-
14044278010
-
New model for crystalline polyglutamine assemblies and their connection with amyloid fibrils
-
Sikorski, P., Atkins, E 2005. New model for crystalline polyglutamine assemblies and their connection with amyloid fibrils. Biomacromolecules 6, 425-432.
-
(2005)
Biomacromolecules
, vol.6
, pp. 425-432
-
-
Sikorski, P.1
Atkins, E.2
-
23
-
-
31944449691
-
Evidence that Perutz's double-beta-stranded subunit structure for betaamyloids also applies to their channel-forming structures in membranes
-
Singer, S. J., Dewji, N. N 2006. Evidence that Perutz's double-beta-stranded subunit structure for betaamyloids also applies to their channel-forming structures in membranes. In: Proceedings of the National Academy of Sciences of the United States of America 103, 1546-1550.
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, pp. 1546-1550
-
-
Singer, S.J.1
Dewji, N.N.2
-
24
-
-
0032560959
-
Continuum solvent studies of the stability of DNA, RNA, and phosphoramidate-DNA helices
-
Srinivasan, J., Cheatham, T. E. III, Cieplak, P., Kollman, P. A., Case, D. A. 1998. Continuum solvent studies of the stability of DNA, RNA, and phosphoramidate-DNA helices. Journal of the American Chemical Society 120, 9401-9409.
-
(1998)
Journal of the American Chemical Society
, vol.120
, pp. 9401-9409
-
-
Srinivasan, J.1
Cheatham III, T.E.2
Cieplak, P.3
Kollman, P.A.4
Case, D.A.5
-
25
-
-
22144432561
-
Molecular dynamics simulations indicate a possible role of parallel beta-helices in seeded aggregation of poly-Gln
-
Stork, M., Giese, A., Kretzschmar, H. A., Tavan, P 2005. Molecular dynamics simulations indicate a possible role of parallel beta-helices in seeded aggregation of poly-Gln. Biophysical Journal 88, 2442-2451.
-
(2005)
Biophysical Journal
, vol.88
, pp. 2442-2451
-
-
Stork, M.1
Giese, A.2
Kretzschmar, H.A.3
Tavan, P.4
-
26
-
-
3242875210
-
ElNémo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement
-
Suhre, K., Sanejouand, Y. H 2004. ElNémo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Reserch 32, W610-614. doi: 10. 1093/nar/gkh368.
-
(2004)
Nucleic Acids Reserch
, vol.32
-
-
Suhre, K.1
Sanejouand, Y.H.2
-
27
-
-
65649129896
-
MDGRAPE-3 chip: a 165 Gflops Application Specific LSI for Molecular Dynamics Simulations
-
IEEE Computer Society
-
Taiji, M 2004. MDGRAPE-3 chip: a 165 Gflops Application Specific LSI for Molecular Dynamics Simulations. In: Proceedings of Hot Chips 16 in CD-ROM, IEEE Computer Society.
-
(2004)
Proceedings of Hot Chips 16 in CD-ROM
-
-
Taiji, M.1
-
28
-
-
0035976971
-
Intra- and intermolecular -pleated sheet formation in glutamine-repeat inserted myoglobin as a model for polyglutamine diseases
-
Tanaka, M., Morishima, I., Akagi, T., Hashikawa, T., Nukina, N 2001. Intra- and intermolecular -pleated sheet formation in glutamine-repeat inserted myoglobin as a model for polyglutamine diseases. The Journal of Biological Chemistry 276, 45470-45475.
-
(2001)
The Journal of Biological Chemistry
, vol.276
, pp. 45470-45475
-
-
Tanaka, M.1
Morishima, I.2
Akagi, T.3
Hashikawa, T.4
Nukina, N.5
-
30
-
-
4644334088
-
Inhibition of polyglutamine aggregate cytotoxicity by a structurebased elongation inhibitor
-
Thakur, A. K., Yang, W., Wetzel, R 2004. Inhibition of polyglutamine aggregate cytotoxicity by a structurebased elongation inhibitor. The FASEB Journal 18, 923-925.
-
(2004)
The FASEB Journal
, vol.18
, pp. 923-925
-
-
Thakur, A.K.1
Yang, W.2
Wetzel, R.3
-
31
-
-
27344454932
-
GROMACS: fast, flexible, and free
-
van der Spoel, D., Lindahl, E., Hess, B., Groenhof, G., Mark, A. E., Berendsen, H. J 2005. GROMACS: fast, flexible, and free. Journal of Computational Chemistry 26, 1701-1718.
-
(2005)
Journal of Computational Chemistry
, vol.26
, pp. 1701-1718
-
-
van der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.6
-
32
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang, J. M., Cieplak, P., Kollman, P. A 2000. How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? Journal of Computational Chemistry 21, 1049-1074.
-
(2000)
Journal of Computational Chemistry
, vol.21
, pp. 1049-1074
-
-
Wang, J.M.1
Cieplak, P.2
Kollman, P.A.3
|