-
1
-
-
18244399035
-
Global optimization of bioprocesses using stochastic and hybrid methods
-
Nonconvex Optimization and Its Applications, Dordrecht: Kluwer Academic
-
Banga, J. R., Moles, C. G., Alonso, A. A., 2003. Global optimization of bioprocesses using stochastic and hybrid methods. In: Frontiers in Global Optimization, Nonconvex Optimization and Its Applications, vol. 74, pp. 45-70. Kluwer Academic, Dordrecht.
-
(2003)
Frontiers in Global Optimization
, vol.74
, pp. 45-70
-
-
Banga, J.R.1
Moles, C.G.2
Alonso, A.A.3
-
2
-
-
77952672667
-
Nonparametric collocation ODE parameter estimation: Application in biochemical pathway modelling
-
September 2008, Manchester, UK
-
Brown, M., He, F., Zhan, C., Yeung, L. F., 2008. Nonparametric collocation ODE parameter estimation: application in biochemical pathway modelling. In: UKACC International Conference on Control, September 2008, Manchester, UK.
-
(2008)
UKACC International Conference on Control
-
-
Brown, M.1
He, F.2
Zhan, C.3
Yeung, L.F.4
-
3
-
-
85128536539
-
-
Accepted for IEEE Conference on Decision and Control, Shanghai, P.R. China, December
-
Brown, M., He, F., Papadopoulos, G., 2009. Dynamic basis pursuit regularization for complex biochemical pathway identification. Accepted for IEEE Conference on Decision and Control, Shanghai, P. R. China, December.
-
(2009)
Dynamic Basis Pursuit Regularization for Complex Biochemical Pathway Identification
-
-
Brown, M.1
He, F.2
Papadopoulos, G.3
-
4
-
-
52949112270
-
Modeling molecular interaction networks with nonlinear ordinary differential equations
-
Z. Szallasi, J. Stelling, and V. Periwal (Eds.), Cambridge: MIT Press
-
Conrad, E. D., Tyson, J. J., 2006. Modeling molecular interaction networks with nonlinear ordinary differential equations. In: Szallasi, Z., Stelling, J., Periwal, V. (Eds.), Systems Modelling in Cellular Biology: From Concept to Nuts and Bolts. MIT Press, Cambridge.
-
(2006)
Systems Modelling in Cellular Biology: From Concept to Nuts and Bolts
-
-
Conrad, E.D.1
Tyson, J.J.2
-
5
-
-
57349131865
-
Control of translation initiation: A model-based analysis from limited experimental data
-
Dimelow, R. J., Wilkinson, S. J., 2009. Control of translation initiation: a model-based analysis from limited experimental data. J. R. Soc. Interface 6, 51-62.
-
(2009)
J. R. Soc. Interface
, vol.6
, pp. 51-62
-
-
Dimelow, R.J.1
Wilkinson, S.J.2
-
6
-
-
0033233447
-
Tikhonov regularization and total least squares
-
Golub, G. H., Hansen, P. C., Leary, D. P. O., 1999. Tikhonov regularization and total least squares. SIAM J. Matrix. Anal. Appl. 21, 185-194.
-
(1999)
SIAM J. Matrix. Anal. Appl.
, vol.21
, pp. 185-194
-
-
Golub, G.H.1
Hansen, P.C.2
Leary, D.P.O.3
-
7
-
-
35748977901
-
Universally sloppy parameter sensitivities in systems biology models
-
Gutenkunst, R. N., Waterfall, J. J., Casey, F. P., Brown, K. S., Myers, C. R., Sethna, J. P., 2007. Universally sloppy parameter sensitivities in systems biology models. PLoS Comput. Biol 3, 1871-1878.
-
(2007)
PLoS Comput. Biol
, vol.3
, pp. 1871-1878
-
-
Gutenkunst, R.N.1
Waterfall, J.J.2
Casey, F.P.3
Brown, K.S.4
Myers, C.R.5
Sethna, J.P.6
-
9
-
-
77952675768
-
On the complexity-sensitivity trade-off for the NF-κB pathway modelling
-
Hong Kong
-
He, F., Brown, M., Yeung, L. F., 2008. On the complexity-sensitivity trade-off for the NF-κB pathway modelling. In: IEEE World Congress on Computational Intelligence, Hong Kong, pp. 3932-3939.
-
(2008)
IEEE World Congress on Computational Intelligence
, pp. 3932-3939
-
-
He, F.1
Brown, M.2
Yeung, L.F.3
-
10
-
-
46449099768
-
Improving data fitting of a signal transduction model by global sensitivity analysis
-
New York City, USA
-
Jin, Y., Yue, H., Liang, Y., Kell, D. B., 2007. Improving data fitting of a signal transduction model by global sensitivity analysis. In: American Control Conference, New York City, USA, pp. 2708-2713.
-
(2007)
American Control Conference
, pp. 2708-2713
-
-
Jin, Y.1
Yue, H.2
Liang, Y.3
Kell, D.B.4
-
11
-
-
0031084233
-
On Tikhonov regularization, bias and variance in nonlinear system identification
-
Johansen, T. A., 1997. On Tikhonov regularization, bias and variance in nonlinear system identification. Automatica 33(3), 441-446.
-
(1997)
Automatica
, vol.33
, Issue.3
, pp. 441-446
-
-
Johansen, T.A.1
-
13
-
-
0035850243
-
Estimation of kinetic parameters in a structured yeast model using regularization
-
Lei, F., Jorgensen, S. B., 2001. Estimation of kinetic parameters in a structured yeast model using regularization. J. Biotechnol. 88, 223-237.
-
(2001)
J. Biotechnol.
, vol.88
, pp. 223-237
-
-
Lei, F.1
Jorgensen, S.B.2
-
14
-
-
23844553817
-
Biochemical network models simplified by balanced truncation
-
Liebermeister, W., Baur, U., Klipp, E., 2005. Biochemical network models simplified by balanced truncation. FEBS J. 272, 4034-4043.
-
(2005)
FEBS J.
, vol.272
, pp. 4034-4043
-
-
Liebermeister, W.1
Baur, U.2
Klipp, E.3
-
15
-
-
77952672223
-
-
Report of Johann Radon Institute for Computational and Applied Mathematics (RICAM), 2008-25
-
Muller, S., Lu, J., Kugler, P., Engl, H. W., 2008. Parameter identification in systems biology: solving ill-posed inverse problem using regularization. Report of Johann Radon Institute for Computational and Applied Mathematics (RICAM), 2008-25. http://www. ricam. oeaw. ac. at/publications/reports/08/rep08-25. pdf.
-
(2008)
Parameter Identification in Systems Biology: Solving Ill-Posed Inverse Problem using Regularization
-
-
Muller, S.1
Lu, J.2
Kugler, P.3
Engl, H.W.4
-
16
-
-
0032025439
-
Simplification of mathematical models of chemical reaction systems
-
Okino, M. S., Mavrovouniotis, M. L., 1998. Simplification of mathematical models of chemical reaction systems. Chem. Rev. 98, 391-408.
-
(1998)
Chem. Rev.
, vol.98
, pp. 391-408
-
-
Okino, M.S.1
Mavrovouniotis, M.L.2
-
17
-
-
84886068408
-
Feature sensitivity of biochemical signalling pathways
-
April 2007, Hawaii, USA
-
Papadopoulos, G., Brown, M., 2007. Feature sensitivity of biochemical signalling pathways. In: IEEE Symp. Comp. Intell. Bioinf. Comput. Biol., April 2007, Hawaii, USA, pp. 373-380.
-
(2007)
IEEE Symp. Comp. Intell. Bioinf. Comput. Biol.
, pp. 373-380
-
-
Papadopoulos, G.1
Brown, M.2
-
18
-
-
32044474451
-
A hybrid approach for efficient and robust parameter estimation in biochemical pathways
-
Rodriguez, M., Mendes, P., Banga, J. R., 2006a. A hybrid approach for efficient and robust parameter estimation in biochemical pathways. Biosystems 83, 248-265.
-
(2006)
Biosystems
, vol.83
, pp. 248-265
-
-
Rodriguez, M.1
Mendes, P.2
Banga, J.R.3
-
19
-
-
33751423943
-
Novel metaheuristic for parameter estimation in nonlinear dynamic biology systems
-
Rodriguez, M., Egea, J. A., Banga, J. R., 2006b. Novel metaheuristic for parameter estimation in nonlinear dynamic biology systems. BMC Bioinformatics 7, 483-501.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 483-501
-
-
Rodriguez, M.1
Egea, J.A.2
Banga, J.R.3
-
21
-
-
37249067715
-
Proximate Parameter Tuning for biochemical networks with uncertain kinetic parameters
-
Wilkinson, S. J., Benson, N., Kell, D. B., 2008. Proximate Parameter Tuning for biochemical networks with uncertain kinetic parameters. Mol. Biosyst. 4, 74-97.
-
(2008)
Mol. Biosyst.
, vol.4
, pp. 74-97
-
-
Wilkinson, S.J.1
Benson, N.2
Kell, D.B.3
-
22
-
-
33751101584
-
Insights into the behaviour of systems biology models from dynamic sensitivity and identifiability analysis: A case study of an NF-κB signalling pathway
-
Yue, H., Brown, M., Kell, D. B., Knowles, J., Wang, H., Broomhead, D., 2006. Insights into the behaviour of systems biology models from dynamic sensitivity and identifiability analysis: a case study of an NF-κB signalling pathway. Mol. Biosyst. 2(12), 640-649.
-
(2006)
Mol. Biosyst.
, vol.2
, Issue.12
, pp. 640-649
-
-
Yue, H.1
Brown, M.2
Kell, D.B.3
Knowles, J.4
Wang, H.5
Broomhead, D.6
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