Characterization of the Pseudomonas aeruginosa transcriptional response to phenylalanine and tyrosine

Journal of Bacteriology

Volumn 192, Issue 11, 2010, Pages 2722-2728

  Palmer, Gregory C ^a   Palmer, Kelli L ^a   Jorth, Peter A ^a   Whiteley, Marvin ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC AMINO ACID; PHENYLALANINE; TRANSCRIPTOME; TYROSINE; BACTERIAL PROTEIN; PHHR PROTEIN, PSEUDOMONAS PUTIDA; TRANSACTIVATOR PROTEIN;

ARTICLE; BACTERIAL GROWTH; BIOSYNTHESIS; CYSTIC FIBROSIS; GEL MOBILITY SHIFT ASSAY; GENE MAPPING; GENETIC TRAIT; GENETIC TRANSCRIPTION; HUMAN; HUMAN TISSUE; IN VITRO STUDY; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROMOTER REGION; PSEUDOMONAS AERUGINOSA; TRANSCRIPTOMICS; DNA MICROARRAY; DRUG EFFECT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROTEIN BINDING;

NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA;

BACTERIAL PROTEINS; BASE SEQUENCE; ELECTROPHORETIC MOBILITY SHIFT ASSAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GENETIC COMPLEMENTATION TEST; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENYLALANINE; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; PSEUDOMONAS AERUGINOSA; TRANS-ACTIVATORS; TYROSINE;

EID: 77952558851     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00112-10     Document Type: Article

References (31)

1. Arias-Barrau, E., E. R. Olivera, J. M. Luengo, C. Fernandez, B. Galan, J. L. Garcia, E. Diaz, and B. Minambres. 2004. The homogentisate pathway: a central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida. J. Bacteriol. 186:5062-5077.
2. Ausubel, F., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1997. Short protocols in molecular biology, 3rd ed. John Wiley & Sons, Inc., New York, NY.
3. Barrios, H., B. Valderrama, and E. Morett. 1999. Compilation and analysis of sigma(54)-dependent promoter sequences. Nucleic Acids Res. 27:4305-4313.
4. Boulette, M. L., P. J. Baynham, P. A. Jorth, I. Kukavica-Ibrulj, A. Longoria, K. Barrera, R. C. Levesque, and M. Whiteley. 2009. Characterization of alanine catabolism in Pseudomonas aeruginosa and its importance for proliferation in vivo. J. Bacteriol. 191:6329-6334.
5. Reference deleted.
6. Doring, G., and E. Gulbins. 2009. Cystic fibrosis and innate immunity: how chloride channel mutations provoke lung disease. Cell. Microbiol. 11:208-216.
7. Emerson, J., M. Rosenfeld, S. McNamara, B. Ramsey, and R. L. Gibson. 2002. Pseudomonas aeruginosa and other predictors of mortality and morbidity in young children with cystic fibrosis. Pediatr. Pulmonol. 34:91-100.
8. Farrow, J. M., 3rd, and E. C. Pesci. 2007. Two distinct pathways supply anthranilate as a precursor of the Pseudomonas quinolone signal. J. Bacteriol. 189:3425-3433.
9. Gallagher, L. A., S. L. McKnight, M. S. Kuznetsova, E. C. Pesci, and C. Manoil. 2002. Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa. J. Bacteriol. 184:6472-6480.
10. Harrison, F. 2007. Microbial ecology of the cystic fibrosis lung. Microbiology 153:917-923.
11. Herrera, M. C., E. Duque, J. J. Rodriguez-Herva, A. M. Fernandez-Escamilla, and J. L. Ramos. Identification and characterization of the PhhR regulon in Pseudomonas putida. Environ. Microbiol., in press.
12. Herrera, M. C., T. Krell, X. Zhang, and J. L. Ramos. 2009. PhhR binds to target sequences at different distances with respect to RNA polymerase in order to activate transcription. J. Mol. Biol. 394:576-586.
13. Herrera, M. C., and J. L. Ramos. 2007. Catabolism of phenylalanine by Pseudomonas putida: the NtrC-family PhhR regulator binds to two sites upstream from the phhA gene and stimulates transcription with sigma70. J. Mol. Biol. 366:1374-1386.
14. Kanthakumar, K., G. Taylor, K. W. Tsang, D. R. Cundell, A. Rutman, S. Smith, P. K. Jeffery, P. J. Cole, and R. Wilson. 1993. Mechanisms of action of Pseudomonas aeruginosa pyocyanin on human ciliary beat in vitro. Infect. Immun. 61:2848-2853.
15. Liberati, N. T., J. M. Urbach, S. Miyata, D. G. Lee, E. Drenkard, G. Wu, J. Villanueva, T. Wei, and F. M. Ausubel. 2006. An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants. Proc. Natl. Acad. Sci. U. S. A. 103:2833-2838.
16. Lloyd, A. L., B. J. Marshall, and B. J. Mee. 2005. Identifying cloned Helicobacter pylori promoters by primer extension using a FAM-labelled primer and GeneScan analysis. J. Microbiol. Methods 60:291-298.
17. Mashburn, L. M., A. M. Jett, D. R. Akins, and M. Whiteley. 2005. Staphylococcus aureus serves as an iron source for Pseudomonas aeruginosa during in vivo coculture. J. Bacteriol. 187:554-566.
18. Mashburn, L. M., and M. Whiteley. 2005. Membrane vesicles traffic signals and facilitate group activities in a prokaryote. Nature 437:422-425.
19. Palmer, K. L., L. M. Aye, and M. Whiteley. 2007. Nutritional cues control Pseudomonas aeruginosa multicellular behavior in cystic fibrosis sputum. J. Bacteriol. 189:8079-8087.
20. Palmer, K. L., S. A. Brown, and M. Whiteley. 2007. Membrane-bound nitrate reductase is required for anaerobic growth in cystic fibrosis sputum. J. Bacteriol. 189:4449-4455.
21. Palmer, K. L., L. M. Mashburn, P. K. Singh, and M. Whiteley. 2005. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. J. Bacteriol. 187:5267-5277.
22. Panina, E. M., A. G. Vitreschak, A. A. Mironov, and M. S. Gelfand. 2001. Regulation of aromatic amino acid biosynthesis in gamma-proteobacteria. J. Mol. Microbiol. Biotechnol. 3:529-543.
23. Pesci, E. C., J. B. Milbank, J. P. Pearson, S. McKnight, A. S. Kende, E. P. Greenberg, and B. H. Iglewski. 1999. Quinolone signaling in the cell-to-cell communication system of Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. U. S. A. 96:11229-11234.
24. Pittard, J., H. Camakaris, and J. Yang. 2005. The TyrR regulon. Mol. Microbiol. 55:16-26.
25. Schuster, M., C. P. Lostroh, T. Ogi, and E. P. Greenberg. 2003. Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysis. J. Bacteriol. 185:2066-2079.
26. Schuster, M., M. L. Urbanowski, and E. P. Greenberg. 2004. Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR. Proc. Natl. Acad. Sci. U. S. A. 101:15833-15839.
27. Song, J., and R. A. Jensen. 1996. PhhR, a divergently transcribed activator of the phenylalanine hydroxylase gene cluster of Pseudomonas aeruginosa. Mol. Microbiol. 22:497-507.
28. Wargo, M. J., and D. A. Hogan. 2009. Identification of genes required for Pseudomonas aeruginosa carnitine catabolism. Microbiology 155:2411-2419.
29. West, S. E., H. P. Schweizer, C. Dall, A. K. Sample, and L. J. Runyen-Janecky. 1994. Construction of improved Escherichia-Pseudomonas shuttle vectors derived from pUC18/19 and sequence of the region required for their replication in Pseudomonas aeruginosa. Gene 148:81-86.
30. Whiteley, M., M. R. Parsek, and E. P. Greenberg. 2000. Regulation of quorum sensing by RpoS in Pseudomonas aeruginosa. J. Bacteriol. 182:4356-4360.
31. Wozniak, D. J. 1994. Integration host factor and sequences downstream of the Pseudomonas aeruginosa algD transcription start site are required for expression. J. Bacteriol. 176:5068-5076.