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Volumn 33, Issue 5-6 SPECL.ISSUE, 2007, Pages 523-539

Modeling complex biological macromolecules: Reduction of multibead models

Author keywords

Bead reduction; Complex proteins; Hydrodynamics; Multibead models; Small angle scattering

Indexed keywords


EID: 77952427667     PISSN: 00920606     EISSN: 15730689     Source Type: Journal    
DOI: 10.1007/s10867-008-9063-6     Document Type: Article
Times cited : (4)

References (29)
  • 2
    • 0008217481 scopus 로고
    • Small-angle X-ray scattering of proteins in relation to food systems, with special emphasis on enzymes and storage proteins
    • Baianu, I.C., Pessen, H., Kumosinski, T.F. (eds.) Advanced Techniques, Structures, and Applications Van Nostrand Reinhold, New York
    • Durchschlag, H.: Small-angle X-ray scattering of proteins in relation to food systems, with special emphasis on enzymes and storage proteins. In: Baianu, I.C., Pessen, H., Kumosinski, T.F. (eds.) Physical Chemistry of Food Processes, Vol. 2 Advanced Techniques, Structures, and Applications, pp. 18-117. Van Nostrand Reinhold, New York (1993)
    • (1993) Physical Chemistry of Food Processes , vol.2 , pp. 18-117
    • Durchschlag, H.1
  • 5
    • 0242571958 scopus 로고    scopus 로고
    • Small-angle scattering studies of biological macromolecules in solution
    • Svergun, D.I., Koch, M.H.J.: Small-angle scattering studies of biological macromolecules in solution. Rep. Prog. Phys. 66, 1735-1782 (2003)
    • (2003) Rep. Prog. Phys. , vol.66 , pp. 1735-1782
    • Svergun, D.I.1    Koch, M.H.J.2
  • 6
    • 34248389651 scopus 로고    scopus 로고
    • Modelling of biopolymers
    • Scott, D.J., Harding, S.E., Rowe, A.J. (eds.) Royal Society of Chemistry, Cambridge
    • Zipper, P., Durchschlag, H., Krebs, A.: Modelling of biopolymers. In: Scott, D.J., Harding, S.E., Rowe, A.J. (eds.) Analytical Ultracentrifugation: Techniques and Methods, pp. 320-371. Royal Society of Chemistry, Cambridge (2005)
    • (2005) Analytical Ultracentrifugation: Techniques and Methods , pp. 320-371
    • Zipper, P.1    Durchschlag, H.2    Krebs, A.3
  • 8
    • 0001229341 scopus 로고    scopus 로고
    • Calculation of hydrodynamic properties of globular proteins from their atomic-level structure
    • García de la Torre, J., Huertas, M.L., Carrasco, B.: Calculation of hydrodynamic properties of globular proteins from their atomic-level structure. Biophys. J. 78, 719-730 (2000)
    • (2000) Biophys. J. , vol.78 , pp. 719-730
    • García De La Torre, J.1    Huertas, M.L.2    Carrasco, B.3
  • 9
    • 0002957583 scopus 로고    scopus 로고
    • Calculation of hydrodynamic parameters of proteins from crystallographic data using multibody approaches
    • Zipper, P., Durchschlag, H.: Calculation of hydrodynamic parameters of proteins from crystallographic data using multibody approaches. Prog. Colloid & Polym. Sci. 107, 58-71 (1997)
    • (1997) Prog. Colloid & Polym. Sci. , vol.107 , pp. 58-71
    • Zipper, P.1    Durchschlag, H.2
  • 10
    • 0032437533 scopus 로고    scopus 로고
    • Recent advances in the calculation of hydrodynamic parameters from crystallographic data by multibody approaches
    • Zipper, P., Durchschlag, H.: Recent advances in the calculation of hydrodynamic parameters from crystallographic data by multibody approaches. Biochem. Soc. Trans. 26, 726-731 (1998)
    • (1998) Biochem. Soc. Trans. , vol.26 , pp. 726-731
    • Zipper, P.1    Durchschlag, H.2
  • 11
    • 0034503649 scopus 로고    scopus 로고
    • Prediction of hydrodynamic and small-angle scattering parameters from crystal and electron microscopic structures
    • Zipper, P., Durchschlag, H.: Prediction of hydrodynamic and small-angle scattering parameters from crystal and electron microscopic structures. J. Appl. Crystallogr. 33, 788-792 (2000)
    • (2000) J. Appl. Crystallogr. , vol.33 , pp. 788-792
    • Zipper, P.1    Durchschlag, H.2
  • 12
    • 0036955152 scopus 로고    scopus 로고
    • Prediction of hydrodynamic parameters of Lumbricus terrestris hemoglobin from small-angle X-ray and electron microscopic structures
    • Zipper, P., Krebs, A., Durchschlag, H.: Prediction of hydrodynamic parameters of Lumbricus terrestris hemoglobin from small-angle X-ray and electron microscopic structures. Prog. Colloid & Polym. Sci. 119, 141-148 (2002)
    • (2002) Prog. Colloid & Polym. Sci. , vol.119 , pp. 141-148
    • Zipper, P.1    Krebs, A.2    Durchschlag, H.3
  • 13
    • 0038039457 scopus 로고    scopus 로고
    • Modeling of protein solution structures
    • Zipper, P., Durchschlag, H.: Modeling of protein solution structures. J. Appl. Crystallogr. 36, 509-514 (2003)
    • (2003) J. Appl. Crystallogr. , vol.36 , pp. 509-514
    • Zipper, P.1    Durchschlag, H.2
  • 14
    • 4143146265 scopus 로고    scopus 로고
    • Small angle X-ray scattering studies and modeling of Eudistylia vancouverii chlorocruorin and Macrobdella decora hemoglobin
    • Krebs, A., Durchschlag, H., Zipper, P.: Small angle X-ray scattering studies and modeling of Eudistylia vancouverii chlorocruorin and Macrobdella decora hemoglobin. Biophys. J. 87, 1173-1185 (2004)
    • (2004) Biophys. J. , vol.87 , pp. 1173-1185
    • Krebs, A.1    Durchschlag, H.2    Zipper, P.3
  • 15
    • 33947322160 scopus 로고    scopus 로고
    • Calculation of volume, surface, and hydration properties of biopolymers
    • Scott, D.J., Harding, S.E., Rowe, A.J. (eds.) Royal Society of Chemistry, Cambridge
    • Durchschlag, H., Zipper, P.: Calculation of volume, surface, and hydration properties of biopolymers. In: Scott, D.J., Harding, S.E., Rowe, A.J. (eds.) Analytical Ultracentrifugation: Techniques and Methods, pp. 389-431. Royal Society of Chemistry, Cambridge (2005)
    • (2005) Analytical Ultracentrifugation: Techniques and Methods , pp. 389-431
    • Durchschlag, H.1    Zipper, P.2
  • 16
    • 34248388501 scopus 로고    scopus 로고
    • Modelling of bacteriophage capsids and free nucleic acids
    • Zipper, P., Durchschlag, H.: Modelling of bacteriophage capsids and free nucleic acids. J. Appl. Crystallogr. 40, s153-s158 (2007)
    • (2007) J. Appl. Crystallogr. , vol.40
    • Zipper, P.1    Durchschlag, H.2
  • 17
    • 36048933369 scopus 로고    scopus 로고
    • A comparison of protein models obtained by small-angle X-ray scattering and crystallography
    • Durchschlag, H., Zipper, P., Krebs, A.: A comparison of protein models obtained by small-angle X-ray scattering and crystallography. J. Appl. Crystallogr. 40, 1123-1134 (2007)
    • (2007) J. Appl. Crystallogr. , vol.40 , pp. 1123-1134
    • Durchschlag, H.1    Zipper, P.2    Krebs, A.3
  • 18
  • 20
    • 10244252699 scopus 로고    scopus 로고
    • Modeling the hydration of proteins at different pH values
    • Durchschlag, H., Zipper, P.: Modeling the hydration of proteins at different pH values. Prog. Colloid & Polym. Sci. 127, 98-112 (2004)
    • (2004) Prog. Colloid & Polym. Sci. , vol.127 , pp. 98-112
    • Durchschlag, H.1    Zipper, P.2
  • 23
    • 0000957763 scopus 로고
    • Computation of distance distribution functions and scattering functions of models for small angle scattering experiments
    • Glatter, O.: Computation of distance distribution functions and scattering functions of models for small angle scattering experiments. Acta Phys. Austriaca 52, 243-256 (1980)
    • (1980) Acta Phys. Austriaca , vol.52 , pp. 243-256
    • Glatter, O.1
  • 24
    • 33847065474 scopus 로고    scopus 로고
    • Improved calculation of rotational diffusion and intrinsic viscosity of bead models for macromolecules and nanoparticles
    • García de la Torre, J., del Rio Echenique, G., Ortega, A.: Improved calculation of rotational diffusion and intrinsic viscosity of bead models for macromolecules and nanoparticles. J. Phys. Chem. B 111, 955-961 (2007)
    • (2007) J. Phys. Chem. B , vol.111 , pp. 955-961
    • García De La Torre, J.1    Del Rio Echenique, G.2    Ortega, A.3
  • 25
    • 0001269791 scopus 로고    scopus 로고
    • Prediction of hydrodynamic parameters from 3D structures
    • Zipper, P., Durchschlag, H.: Prediction of hydrodynamic parameters from 3D structures. Prog. Colloid & Polym. Sci. 113, 106-113 (1999)
    • (1999) Prog. Colloid & Polym. Sci. , vol.113 , pp. 106-113
    • Zipper, P.1    Durchschlag, H.2
  • 26
    • 0032827044 scopus 로고    scopus 로고
    • Calculation of hydrodynamic properties of macromolecular bead models with overlapping spheres
    • Carrasco, B., García de la Torre, J., Zipper, P.: Calculation of hydrodynamic properties of macromolecular bead models with overlapping spheres. Eur. Biophys. J. 28, 510-515 (1999)
    • (1999) Eur. Biophys. J. , vol.28 , pp. 510-515
    • Carrasco, B.1    García De La Torre, J.2    Zipper, P.3
  • 27
    • 0000203062 scopus 로고    scopus 로고
    • Intrinsic viscosity and rotational diffusion of bead models for rigid macromolecules and bioparticles
    • García de la Torre, J., Carrasco, B.: Intrinsic viscosity and rotational diffusion of bead models for rigid macromolecules and bioparticles. Eur. Biophys. J. 27, 549-557 (1998)
    • (1998) Eur. Biophys. J. , vol.27 , pp. 549-557
    • García De La Torre, J.1    Carrasco, B.2
  • 28
    • 0019526265 scopus 로고
    • Hydrodynamic properties of complex, rigid, biological macromolecules: Theory and applications
    • García de la Torre, J., Bloomfield, V.A.: Hydrodynamic properties of complex, rigid, biological macromolecules: theory and applications. Q. Rev. Biophys. 14, 81-139 (1981)
    • (1981) Q. Rev. Biophys. , vol.14 , pp. 81-139
    • García De La Torre, J.1    Bloomfield, V.A.2
  • 29
    • 84985649728 scopus 로고
    • Transport properties of oligomeric subunit structures
    • García Bernal, J.M., García de la Torre, J.: Transport properties of oligomeric subunit structures. Biopolymers 20, 129-139 (1981)
    • (1981) Biopolymers , vol.20 , pp. 129-139
    • García Bernal, J.M.1    García De La Torre, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.