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Volumn 38, Issue 7, 2010, Pages 2378-2386

An RNA-based transcription activator derived from an inhibitory aptamer

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; DNA DIRECTED RNA POLYMERASE III; RNA; TRANSCRIPTION FACTOR IIB; TRANSACTIVATOR PROTEIN;

EID: 77952318312     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp1227     Document Type: Article
Times cited : (15)

References (48)
  • 1
    • 70249104647 scopus 로고    scopus 로고
    • Defining mechanisms that regulate RNA polymerase II transcription in vivo
    • Fuda, N.J., Ardehali, M.B. and Lis, J.T. (2009) Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature, 461, 186-192.
    • (2009) Nature , vol.461 , pp. 186-192
    • Fuda, N.J.1    Ardehali, M.B.2    Lis, J.T.3
  • 2
    • 0037154984 scopus 로고    scopus 로고
    • The RNA polymerase II machinery: structure illuminates function
    • Woychik, N.A. and Hampsey, M. (2002) The RNA polymerase II machinery: structure illuminates function. Cell, 108, 453-463
    • (2002) Cell , vol.108 , pp. 453-463
    • Woychik, N.A.1    Hampsey, M.2
  • 3
    • 70450171352 scopus 로고    scopus 로고
    • RNA polymerase II-TFIIB structure and mechanism of transcription initiation
    • Kostrewa, D., Zeller, M.E., Armache, K.J., Seizl, M., Leike, K., Thomm, M. and Cramer, P. (2009) RNA polymerase II-TFIIB structure and mechanism of transcription initiation. Nature, 462, 323-330.
    • (2009) Nature , vol.462 , pp. 323-330
    • Kostrewa, D.1    Zeller, M.E.2    Armache, K.J.3    Seizl, M.4    Leike, K.5    Thomm, M.6    Cramer, P.7
  • 4
    • 0033538531 scopus 로고    scopus 로고
    • Fundamentally different logic of gene regulation in eukaryotes and prokaryotes
    • Struhl, K. (1999) Fundamentally different logic of gene regulation in eukaryotes and prokaryotes. Cell, 98, 1-4.
    • (1999) Cell , vol.98 , pp. 1-4
    • Struhl, K.1
  • 5
    • 0030960672 scopus 로고    scopus 로고
    • Transcriptional activation by recruitment
    • Ptashne, M. and Gann, A. (1997) Transcriptional activation by recruitment. Nature, 386, 569-577.
    • (1997) Nature , vol.386 , pp. 569-577
    • Ptashne, M.1    Gann, A.2
  • 6
    • 0037154982 scopus 로고    scopus 로고
    • A unified theory of gene expression
    • Orphanides, G. and Reinberg, D. (2002) A unified theory of gene expression. Cell, 108, 439-451.
    • (2002) Cell , vol.108 , pp. 439-451
    • Orphanides, G.1    Reinberg, D.2
  • 7
    • 0023649184 scopus 로고
    • A new class of yeast transcriptional activators
    • Ma, J. and Ptashne, M. (1987) A new class of yeast transcriptional activators. Cell, 51, 113-119.
    • (1987) Cell , vol.51 , pp. 113-119
    • Ma, J.1    Ptashne, M.2
  • 8
    • 0037337009 scopus 로고    scopus 로고
    • RNA sequences that work as transcriptional activating regions
    • Saha, S., Ansari, A.Z., Jarell, K.A. and Ptashne, M. (2003) RNA sequences that work as transcriptional activating regions. Nucleic Acids Res., 31, 1565-1570.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 1565-1570
    • Saha, S.1    Ansari, A.Z.2    Jarell, K.A.3    Ptashne, M.4
  • 9
    • 0037863216 scopus 로고    scopus 로고
    • In vivo evolution of an RNA-based transcriptional activator
    • Buskirk, A.R., Kehayova, P.D., Landrigan, A. and Liu, D.R. (2003) In vivo evolution of an RNA-based transcriptional activator. Chem. Biol., 10, 533-540.
    • (2003) Chem. Biol. , vol.10 , pp. 533-540
    • Buskirk, A.R.1    Kehayova, P.D.2    Landrigan, A.3    Liu, D.R.4
  • 10
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk, C. and Gold, L. (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science, 249, 505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 11
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington, A.D. and Szostak, J.W. (1990) In vitro selection of RNA molecules that bind specific ligands. Nature, 346, 818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 12
    • 0033621140 scopus 로고    scopus 로고
    • RNA aptamers as effective protein antagonists in a multicellular organism
    • Shi, H., Hoffman, B.E. and Lis, J.T. (1999) RNA aptamers as effective protein antagonists in a multicellular organism. Proc. Natl Acad. Sci. USA, 96, 10033-10038.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 10033-10038
    • Shi, H.1    Hoffman, B.E.2    Lis, J.T.3
  • 13
    • 44349158997 scopus 로고    scopus 로고
    • TFIIB aptamers inhibit transcription by perturbing PIC formation at distinct stages
    • Sevilimedu, A., Shi, H. and Lis, J.T. (2008) TFIIB aptamers inhibit transcription by perturbing PIC formation at distinct stages. Nucleic Acids Res., 36, 3118-3127.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 3118-3127
    • Sevilimedu, A.1    Shi, H.2    Lis, J.T.3
  • 14
    • 0036354598 scopus 로고    scopus 로고
    • Analyzing mRNA-protein complexes using a yeast three-hybrid system
    • Bernstein, D.S., Buter, N., Stumpf, C. and Wickens, M. (2002) Analyzing mRNA-protein complexes using a yeast three-hybrid system. Methods, 26, 123-141.
    • (2002) Methods , vol.26 , pp. 123-141
    • Bernstein, D.S.1    Buter, N.2    Stumpf, C.3    Wickens, M.4
  • 15
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 16
    • 34247247678 scopus 로고    scopus 로고
    • RNA aptamers directed to discrete functional sites on a single protein structural domain
    • Shi, H., Fan, X., Sevilimedu, A. and Lis, J.T. (2007) RNA aptamers directed to discrete functional sites on a single protein structural domain. Proc. Natl Acad. Sci. USA, 104, 3742-3746.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 3742-3746
    • Shi, H.1    Fan, X.2    Sevilimedu, A.3    Lis, J.T.4
  • 18
    • 25644446114 scopus 로고    scopus 로고
    • Generation of a yeast two-hybrid strain suitable for competitive protein binding analysis
    • 168
    • Ralser, M., Goehler, H., Wanker, E.E., Lehrach, H. and Krobitsch, S. (2005) Generation of a yeast two-hybrid strain suitable for competitive protein binding analysis. BioTechniques, 39, 165-166, 168.
    • (2005) BioTechniques , vol.39 , pp. 165-166
    • Ralser, M.1    Goehler, H.2    Wanker, E.E.3    Lehrach, H.4    Krobitsch, S.5
  • 19
    • 0036646133 scopus 로고    scopus 로고
    • Optical imaging fiber-based single live cell arrays: a high-density cell assay platform
    • Biran, I. and Walt, D.R. (2002) Optical imaging fiber-based single live cell arrays: a high-density cell assay platform. Anal. Chem., 74, 3046-3054.
    • (2002) Anal. Chem. , vol.74 , pp. 3046-3054
    • Biran, I.1    Walt, D.R.2
  • 20
    • 1842298127 scopus 로고    scopus 로고
    • Selective targeting and inhibition of yeast RNA polymerase II by RNA aptamers
    • Thomas, M., Chedin, S., Carles, C., Riva, M., Famulok, M. and Sentenac, A. (1997) Selective targeting and inhibition of yeast RNA polymerase II by RNA aptamers. J. Biol. Chem., 272, 27980-27986.
    • (1997) J. Biol. Chem. , vol.272 , pp. 27980-27986
    • Thomas, M.1    Chedin, S.2    Carles, C.3    Riva, M.4    Famulok, M.5    Sentenac, A.6
  • 21
    • 30044449636 scopus 로고    scopus 로고
    • Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs
    • Kettenberger, H., Eisenfuhr, A., Brueckner, F., Theis, M., Famulok, M. and Cramer, P. (2006) Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs. Nat. Struct. Mol. Biol., 13, 44-48.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 44-48
    • Kettenberger, H.1    Eisenfuhr, A.2    Brueckner, F.3    Theis, M.4    Famulok, M.5    Cramer, P.6
  • 22
    • 2342585280 scopus 로고    scopus 로고
    • Probing TBP interactions in transcription initiation and reinitiation with RNA aptamers that act in distinct modes
    • Fan, X., Shi, H., Adelman, K. and Lis, J.T. (2004) Probing TBP interactions in transcription initiation and reinitiation with RNA aptamers that act in distinct modes. Proc. Natl Acad. Sci. USA, 101, 6934-6939.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 6934-6939
    • Fan, X.1    Shi, H.2    Adelman, K.3    Lis, J.T.4
  • 23
    • 0023805741 scopus 로고
    • Negative effect of the transcriptional activator GAL4
    • Gill, G. and Ptashne, M. (1988) Negative effect of the transcriptional activator GAL4. Nature, 334, 721-724.
    • (1988) Nature , vol.334 , pp. 721-724
    • Gill, G.1    Ptashne, M.2
  • 24
    • 0029780704 scopus 로고    scopus 로고
    • Gene activation by recruitment of the RNA polymerase II holoenzyme
    • Farrell, S., Simkovich, N., Wu, Y., Barberis, A. and Ptashne, M. (1996) Gene activation by recruitment of the RNA polymerase II holoenzyme. Genes Dev., 10, 2359-2367.
    • (1996) Genes Dev. , vol.10 , pp. 2359-2367
    • Farrell, S.1    Simkovich, N.2    Wu, Y.3    Barberis, A.4    Ptashne, M.5
  • 25
    • 0037390035 scopus 로고    scopus 로고
    • Yeast genetic selections to optimize RNA decoys for transcription factor NF-kappa B
    • Cassiday, L.A. and Maher, L.J. 3rd. (2003) Yeast genetic selections to optimize RNA decoys for transcription factor NF-kappa B. Proc. Natl Acad. Sci. USA, 100, 3930-3935.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 3930-3935
    • Cassiday, L.A.1    Maher L.J., 3rd.2
  • 26
    • 66249128638 scopus 로고    scopus 로고
    • Composite RNA aptamers as functional mimics of proteins
    • Xu, D. and Shi, H. (2009) Composite RNA aptamers as functional mimics of proteins. Nucleic Acids Res., 37, e71.
    • (2009) Nucleic Acids Res. , vol.37
    • Xu, D.1    Shi, H.2
  • 27
    • 0023652389 scopus 로고
    • Deletion analysis of GAL4 defines two transcriptional activating segments
    • Ma, J. and Ptashne, M. (1987) Deletion analysis of GAL4 defines two transcriptional activating segments. Cell, 48, 847-853.
    • (1987) Cell , vol.48 , pp. 847-853
    • Ma, J.1    Ptashne, M.2
  • 28
    • 0026086914 scopus 로고
    • Critical structural elements of the VP16 transcriptional activation domain
    • Cress, W.D. and Triezenberg, S.J. (1991) Critical structural elements of the VP16 transcriptional activation domain. Science, 251, 87-90.
    • (1991) Science , vol.251 , pp. 87-90
    • Cress, W.D.1    Triezenberg, S.J.2
  • 30
    • 0025977154 scopus 로고
    • Characterization of RPR1, an essential gene encoding the RNA component of Saccharomyces cerevisiae nuclear RNase P
    • Lee, J.Y., Rohlman, C.E., Molony, L.A. and Engelke, D.R. (1991) Characterization of RPR1, an essential gene encoding the RNA component of Saccharomyces cerevisiae nuclear RNase P. Mol. Cell. Biol., 11, 721-730.
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 721-730
    • Lee, J.Y.1    Rohlman, C.E.2    Molony, L.A.3    Engelke, D.R.4
  • 31
    • 0043009734 scopus 로고    scopus 로고
    • Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
    • Khvorova, A., Lescoute, A., Westhof, E. and Jayasena, S.D. (2003) Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nat. Struct. Biol., 10, 708-712.
    • (2003) Nat. Struct. Biol. , vol.10 , pp. 708-712
    • Khvorova, A.1    Lescoute, A.2    Westhof, E.3    Jayasena, S.D.4
  • 34
    • 0028966589 scopus 로고
    • Connecting a promoter-bound protein to TBP bypasses the need for a transcriptional activation domain
    • Chatterjee, S. and Struhl, K. (1995) Connecting a promoter-bound protein to TBP bypasses the need for a transcriptional activation domain. Nature, 374, 820-822.
    • (1995) Nature , vol.374 , pp. 820-822
    • Chatterjee, S.1    Struhl, K.2
  • 35
    • 0028943781 scopus 로고
    • Stimulation of RNA polymerase II transcription initiation by recruitment of TBP in vivo
    • Klages, N. and Strubin, M. (1995) Stimulation of RNA polymerase II transcription initiation by recruitment of TBP in vivo. Nature, 374, 822-823.
    • (1995) Nature , vol.374 , pp. 822-823
    • Klages, N.1    Strubin, M.2
  • 36
    • 0029118222 scopus 로고
    • Recruiting TATA-binding protein to a promoter: transcriptional activation without an upstream activator
    • Xiao, H., Friesen, J.D. and Lis, J.T. (1995) Recruiting TATA-binding protein to a promoter: transcriptional activation without an upstream activator. Mol. Cell. Biol., 15, 5757-5761.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 5757-5761
    • Xiao, H.1    Friesen, J.D.2    Lis, J.T.3
  • 37
    • 0033053674 scopus 로고    scopus 로고
    • An activation-specific role for transcription factor TFIIB in vivo
    • Wu, W.H. and Hampsey, M. (1999) An activation-specific role for transcription factor TFIIB in vivo. Proc. Natl Acad. Sci. USA, 96, 2764-2769.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 2764-2769
    • Wu, W.H.1    Hampsey, M.2
  • 38
    • 33748755193 scopus 로고    scopus 로고
    • An RNA aptamer that interferes with the DNA binding of the HSF transcription activator
    • Zhao, X., Shi, H., Sevilimedu, A., Liachko, N., Nelson, H.C. and Lis, J.T. (2006) An RNA aptamer that interferes with the DNA binding of the HSF transcription activator. Nucleic Acids Res., 34, 3755-3761.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 3755-3761
    • Zhao, X.1    Shi, H.2    Sevilimedu, A.3    Liachko, N.4    Nelson, H.C.5    Lis, J.T.6
  • 39
    • 0024282785 scopus 로고
    • Yeast heat shock factor is an essential DNA-binding protein that exhibits temperature-dependent phosphorylation
    • Sorger, P.K. and Pelham, H.R. (1988) Yeast heat shock factor is an essential DNA-binding protein that exhibits temperature-dependent phosphorylation. Cell, 54, 855-864.
    • (1988) Cell , vol.54 , pp. 855-864
    • Sorger, P.K.1    Pelham, H.R.2
  • 40
    • 0033654523 scopus 로고    scopus 로고
    • Yeast three-hybrid system to detect and analyze RNA-protein interactions
    • Zhang, B., Kraemer, B., SenGupta, D., Fields, S. and Wickens, M. (2000) Yeast three-hybrid system to detect and analyze RNA-protein interactions. Methods Enzymol, 318, 399-419.
    • (2000) Methods Enzymol , vol.318 , pp. 399-419
    • Zhang, B.1    Kraemer, B.2    SenGupta, D.3    Fields, S.4    Wickens, M.5
  • 41
    • 33947719235 scopus 로고    scopus 로고
    • Combining SELEX and the yeast three-hybrid system for in vivo selection and classification of RNA aptamers
    • Konig, J., Julius, C., Baumann, S., Homann, M., Goringer, H.U. and Feldbrugge, M. (2007) Combining SELEX and the yeast three-hybrid system for in vivo selection and classification of RNA aptamers. RNA, 13, 614-622.
    • (2007) RNA , vol.13 , pp. 614-622
    • Konig, J.1    Julius, C.2    Baumann, S.3    Homann, M.4    Goringer, H.U.5    Feldbrugge, M.6
  • 42
    • 70350700732 scopus 로고    scopus 로고
    • Characterization of anti-NF-kappaB RNA aptamer-binding specificity in vitro and in the yeast three-hybrid system
    • Wurster, S.E., Bida, J.P., Her, Y.F. and Maher, L.J. 3rd. (2009) Characterization of anti-NF-kappaB RNA aptamer-binding specificity in vitro and in the yeast three-hybrid system. Nucleic Acids Res., 37, 6214-6224.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 6214-6224
    • Wurster, S.E.1    Bida, J.P.2    Her, Y.F.3    Maher L.J., 3rd.4
  • 43
    • 0035957109 scopus 로고    scopus 로고
    • In vivo recognition of an RNA aptamer by its transcription factor target
    • Cassiday, L.A. and Maher, L.J. 3rd (2001) In vivo recognition of an RNA aptamer by its transcription factor target. Biochemistry, 40, 2433-2438.
    • (2001) Biochemistry , vol.40 , pp. 2433-2438
    • Cassiday, L.A.1    Maher L.J. 3rd2
  • 46
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong, H., Mason, S.P., Barabasi, A.L. and Oltvai, Z.N. (2001) Lethality and centrality in protein networks. Nature, 411, 41-42.
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabasi, A.L.3    Oltvai, Z.N.4
  • 47
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
    • Ban, N., Nissen, P., Hansen, J., Moore, P.B. and Steitz, T.A. (2000) The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science, 289, 905-920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 48
    • 0035849554 scopus 로고    scopus 로고
    • Thermodynamics of three-way multibranch loops in RNA
    • Diamond, J.M., Turner, D.H. and Mathews, D.H. (2001) Thermodynamics of three-way multibranch loops in RNA. Biochemistry, 40, 6971-6981.
    • (2001) Biochemistry , vol.40 , pp. 6971-6981
    • Diamond, J.M.1    Turner, D.H.2    Mathews, D.H.3


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