Changes of the bacterial assemblages throughout an urban drinking water distribution system

Environmental Monitoring and Assessment

Volumn 165, Issue 1-4, 2010, Pages 27-38

  Kormas, Konstantinos Ar ^a   Neofitou, Christos ^a   Pachiadaki, Maria ^a   Koufostathi, Eulalia ^a  

^a UNIVERSITY OF THESSALY   (Greece)

Author keywords

16S rRNA; Bacteria; Diversity; Drinking water

Indexed keywords

16S RDNA; 16S RRNA; 16S RRNA GENE DIVERSITY; BACTERIAL ASSEMBLAGES; BACTERIAL COMMUNITY; BACTERIAL DIVERSITY; BACTERIAL PATHOGENS; CELL ABUNDANCE; DETECTION LIMITS; DNA EXTRACTION; DRINKING WATER; DRINKING WATER DISINFECTION; DRINKING WATER DISTRIBUTION SYSTEM; HUMAN PATHOGENS; MONITORING PROCESS; PHYLOTYPES; PROTEOBACTERIA; PUMPING WELL; TAP WATER; WATER PUMPING;

BACTERIOLOGY; DISINFECTION; RNA; WATER DISTRIBUTION SYSTEMS; WATER RECYCLING; WATER SUPPLY; WATER TREATMENT; WELL PUMPS; WELLS;

POTABLE WATER;

BACTERIAL DNA; BACTERIAL RNA; DRINKING WATER; RNA 16S; TAP WATER; WELL WATER;

BACTERIUM; BIODIVERSITY; BIOFILM; BIOMONITORING; CLONE; DETECTION METHOD; DISINFECTION; DRINKING WATER; EXTRACTION METHOD; PATHOGEN; POLYMERASE CHAIN REACTION; RNA; WATER TREATMENT;

ARTICLE; BACTERIUM DETECTION; BETAPROTEOBACTERIA; BIOFILM; CITY; CONTROLLED STUDY; DISINFECTION; DNA EXTRACTION; DNA SEQUENCE; GENETIC VARIABILITY; GREECE; HOUSEHOLD; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MOLECULAR CLONING; MYCOBACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; TANK; UNINDEXED SEQUENCE; URBAN AREA; WATER QUALITY; WATER SAMPLING; WATER SUPPLY; WATER TREATMENT;

BACTERIA; GREECE; HUMANS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; URBAN POPULATION; WATER MICROBIOLOGY; WATER SUPPLY;

GREECE; THESSALY; TRIKALA;

BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; MYCOBACTERIUM;

EID: 77952287591     PISSN: 01676369     EISSN: 15732959     Source Type: Journal    
DOI: 10.1007/s10661-009-0924-7     Document Type: Article

References (41)

1. T Aronson A Holtzman N Glover M Boian S Froman OGW Berlin, et al. 1999 Comparison of large restriction fragments of Mycobacterium avium isolates recovered from AIDS and non-AIDS patients with those of isolates from potable water Journal of Clinical Microbiology 37 1008 1012 1:CAS:528:DyaK1MXitFGktrk%3D
2. JY Aller PF Kemp 2008 Are Archaea inherently less diverse than bacteria in the same environments? FEMS Microbiology Ecology 65 74 87 10.1111/j.1574-6941.2008.00498.x 10.1111/j.1574-6941.2008.00498.x 1:CAS:528:DC%2BD1cXotlKgtL0%3D (Pubitemid 351832105)
3. D Berry C Xi L Raskin 2006 Microbial ecology of drinking water distribution systems Current Opinion in Microbiology 17 297 302 1:CAS:528:DC%2BD28Xls1akt7k%3D
4. EC Böttger 1991 Diagnosis and identification of Mycobacteria with PCR Laboratory Medicine 15 414 419
5. D Call 2005 Challenges and opportunities for pathogen detection using DNA microarrays Critical Reviews in Microbiology 31 91 99 10.1080/10408410590921736 10.1080/10408410590921736 1:CAS:528:DC%2BD2MXjvVOltr4%3D (Pubitemid 40762632)
6. RR Colwell PB Brayton DJ Grimes DB Roszak SA Huq LM Palmer 1985 Viable but non-culturable Vibrio cholerae and related pathogens in the environment: Implications for release of genetically engineered microorganisms Nature Biotechnology 3 817 820 10.1038/nbt0985-817 10.1038/nbt0985-817
7. TC Covert MR Rodgers AL Reyes GN Stelma GN Stelma Jr 1999 Occurrence of nontuberculous mycobacteria in environmental samples Applied and Environmental Microbiology 65 2492 2496 1:CAS:528:DyaK1MXjs12gsb0%3D
8. F Emtiazi T Schwartz SM Marten P Krolla-Sidenstein U Obst 2004 Investigation of natural biofilms formed during the production of drinking water from surface water embankment filtration Water Research 38 1197 1206 10.1016/j.watres.2003.10.056 10.1016/j.watres.2003.10.056 1:CAS:528: DC%2BD2cXht1ant74%3D (Pubitemid 38229361)
9. JO Falkinham III CD Norton MW LeChevallier 2001 Factors influencing numbers of Mycobacterium avium, Mycobacterium intracellulare, and other mycobacteria in drinking water distribution system Applied and Environmental Microbiology 67 1225 1231 10.1128/AEM.67.3.1225-1231.2001 10.1128/AEM.67.3.1225- 1231.2001 1:CAS:528:DC%2BD3MXhslSjsLg%3D (Pubitemid 33643564)
10. IJ Good 1953 The population frequencies of species and the estimation of population parameters Biometrika 43 45 63
11. ED Hilborn TC Covert MA Yakrus SI Harris SF Donnelly EW Rice, et al. 2006 Persistence of nontuberculous mycobacteria in a drinking water system after addition of filtration treatment Applied and Environmental Microbiology 72 5864 5869 10.1128/AEM.00759-06 10.1128/AEM.00759-06 1:CAS:528:DC%2BD28XpvVKjsLs%3D (Pubitemid 44414612)
12. Hurst, C. J., Crawford, R. L., Knudsen, G. R., McInerney, M. J., & Stetzenbach, L. D. (2002). Manual of environmental microbiology (2nd ed.). Washington DC: American Society for Microbiology Press.
13. D Hussong RR Colwell M O'Brien E Weiss AD Pearson M Weiner, et al. 1987 Viable Legionella pneumophila not detectable by culture on agar media Nature Biotechnology 5 947 950 10.1038/nbt0987-947 10.1038/nbt0987-947
14. PF Kemp JY Aller 2004 Estimating prokaryotic diversity: When 16S rDNA libraries are large enough? Limnology and Oceanography, Methods 2 114 125
15. Koneman, E. W., Allen, S. D., Janda, W. M., Schreckenberger, P. C., & Win, W. C. (2004). Color atlas and textbook of diagnostic microbiology (5th ed.). New York (NY): Lippincott.
16. Lane, D. J. (1991). Nucleic acids techniques in bacterial systematics. New York (NY): Willey-Interscience.
17. MW LeChevallier NJ Welch DB Smith 1996 Full-scale studies of factors related to coliform regrowth in drinking water Applied and Environmental Microbiology 62 2201 2211 1:CAS:528:DyaK28XjvFGnsLo%3D
18. C Le Dantec J-P Duguet A Montiel N Dumoutier S Dubrou V Vincent 2002 Chlorine disinfection of atypical mycobacteria isolated from a water distribution system Applied and Environmental Microbiology 68 1025 1032 10.1128/AEM.68.3.1025-1032.2002 10.1128/AEM.68.3.1025-1032.2002 (Pubitemid 34205337)
19. MTT Lipponen PJ Martikainen RE Vasara K Servomaa O Zacheus MH Kontro 2004 Occurrence of nitrifiers and diversity of ammonia-oxidizing bacteria in developing drinking water biofilms Water Research 38 4424 4434 10.1016/j.watres.2004.08.021 10.1016/j.watres.2004.08.021 1:CAS:528: DC%2BD2cXhtVSiurzP (Pubitemid 39534943)
20. A Loy W Beisker H Meier 2005 Diversity of Bacteria in natural mineral water after bottling Applied and Environmental Microbiology 71 3624 3632 10.1128/AEM.71.7.3624-3632.2005 10.1128/AEM.71.7.3624-3632.2005 1:CAS:528:DC%2BD2MXmt1yltrg%3D (Pubitemid 40983988)
21. H-Z Lu X-H Weng B Zhu H Li Y-K Yin Y-Z Zhang, et al. 2003 Major outbreak of toxic shock-like syndrome caused by Streptococcus mitis Journal of Clinical Microbiology 41 3051 3055 10.1128/JCM.41.7.3051-3055.2003 10.1128/JCM.41.7.3051- 3055.2003 (Pubitemid 36842300)
22. BL Maidak JR Cole TG Lilburn CT Parker Jr PR Saxman RJ Farris, et al. 2001 The RDP-II (Ribosomal Database Project) Nucleic Acids Research 29 173 174 10.1093/nar/29.1.173 10.1093/nar/29.1.173 1:CAS:528:DC%2BD3MXjtlWmsr0%3D
23. AC Martiny H-J Albrechtsen E Arvin S Molin 2005 Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: Detection of a large nitrite-oxidizing population associated with Nitrospira spp Applied & Environmental Microbiology 71 8611 8617 10.1128/AEM.71.12.8611-8617.2005 10.1128/AEM.71.12.8611-8617.2005 1:CAS:528:DC%2BD2MXhtlehtbvL (Pubitemid 41803995)
24. NR Pace 1997 A molecular view of microbial diversity and the biosphere Science 276 734 740 10.1126/science.276.5313.734 10.1126/science.276.5313.734 1:CAS:528:DyaK2sXivFOltLc%3D (Pubitemid 27199842)
25. M Peters CS Müller S Rüsch-Gerdes C Seidel U Göbel HD Pohle, et al. 1995 Isolation of atypical mycobacteria from tap water in hospitals and homes: Is this a possible source of disseminated MAC infection in AIDS patients? The Journal of Infection 31 39 44 10.1016/S0163-4453(95)91333-5 10.1016/S0163-4453(95)91333-5 1:STN:280:DyaK28%2FhvFWhsQ%3D%3D
26. KG Porter YS Feig 1980 The use of DAPI for identifying and counting aquatic microflora Limnology and Oceanography 25 943 948 10.4319/lo.1980.25.5. 0943
27. JM Regan GW Harrington H Baribeau RD Leon DR Noguera 2003 Diversity of nitrifying bacteria in full-scale chloraminated distribution systems Water Research 37 197 205 10.1016/S0043-1354(02)00237-3 10.1016/S0043-1354(02)00237-3 1:CAS:528:DC%2BD38XotlKht74%3D (Pubitemid 35292541)
28. K Sen M Rodgers 2004 Distribution of six virulence factors in Aeromonas species isolated from US drinking water utilities: A PCR identification Journal of Applied Microbiology 97 1077 1086 10.1111/j.1365-2672.2004.02398.x 10.1111/j.1365-2672.2004.02398.x 1:CAS:528:DC%2BD2cXhtVahtL3F (Pubitemid 39390237)
29. D Spiegelman G Whissell CW Greer 2005 A survey of the methods for the characterization of microbial consortia and communities Canadian Journal of Microbiology 51 355 386 10.1139/w05-003 10.1139/w05-003 1:CAS:528: DC%2BD2MXhtVKnt77I (Pubitemid 41595437)
30. Stackebrandt, E. (2006). Molecular identification, systematics, and population structure of prokaryotes. Berlin: Springer.
31. Staley, J. T., & Reysenbach, A.-L. (2002). Biodiversity of microbial life. Foundation of earth's biosphere. New York (NY): Wiley-Liss.
32. KA Steed JO Falkinham III 2006 Effect of growth in biofilms on chlorine susceptibility of Mycobacterium avium and Mycobacterium intracellulare Applied and Environmental Microbiology 72 4007 4011 10.1128/AEM.02573-05 10.1128/AEM.02573-05 1:CAS:528:DC%2BD28XmtV2gt7Y%3D (Pubitemid 43894864)
33. U Szewzyk R Szewzyk W Manz KH Schleifer 2000 Microbiological safety of drinking water Annual Review of Microbiology 54 81 127 10.1146/annurev.micro.54. 1.81 10.1146/annurev.micro.54.1.81 1:CAS:528:DC%2BD3cXotFWrs78%3D
34. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0 Molecular Biology and Evolution 24 1596 1599 10.1093/molbev/msm092 10.1093/molbev/msm092 1:CAS:528: DC%2BD2sXpsVGrsL8%3D (Pubitemid 47236692)
35. STH Tokajian A Fuad IC Hancock PA Zalloua 2005 Phylogenetic assessment of heterotrophic bacteria from a water distribution system using 16S rDNA sequencing Canadian Journal of Microbiology 51 325 335 10.1139/w05-007 10.1139/w05-007 1:CAS:528:DC%2BD2MXntFCgurY%3D (Pubitemid 41176358)
36. E Torvinen S Suomalainen MJ Lehtola IT Miettinen O Zacheus L Paulin, et al. 2004 Mycobacteria in water and loose deposits of drinking water distribution systems in Finland Applied and Environmental Microbiology 70 1973 1981 10.1128/AEM.70.4.1973-1981.2004 10.1128/AEM.70.4.1973-1981.2004 1:CAS:528:DC%2BD2cXjtlOitLw%3D (Pubitemid 38500494)
37. E Torvinen MJ Lehtola PJ Martikainen IT Miettinen 2007 Survival of Mycobacterium avium in drinking water biofilms as affected by water flow velocity, availability of phosphorus, and temperature Applied and Environmental Microbiology 73 6201 6207 10.1128/AEM.00828-07 10.1128/AEM.00828-07 1:CAS:528:DC%2BD2sXhtFGmtrvJ (Pubitemid 47548030)
38. WHO (2004). Guidelines for drinking water quality (3rd ed.). Geneva: World Health Organization.
39. WHO (2006). Guidelines for drinking water quality. Addendum to volume 1 (3rd ed.). Geneva: World Health Organization.
40. MM Williams JW Domingo MC Meckes CA Kelty HS Rochon 2004 Phylogenetic diversity of drinking water bacteria in a distribution system simulator Journal of Applied Microbiology 96 954 964 10.1111/j.1365-2672.2004.02229.x 10.1111/j.1365-2672.2004.02229.x 1:CAS:528:DC%2BD2cXksFOlsLw%3D (Pubitemid 38582141)
41. Y Yamazaki L Danelishvili M Wu M MacNab LE Bermudez 2006 Mycobacterium avium genes associated with the ability to form biofilm Applied and Environmental Microbiology 72 819 825 10.1128/AEM.72.1.819-825.2006 10.1128/AEM.72.1.819-825.2006 1:CAS:528:DC%2BD28XmtFegug%3D%3D