Polymorphism of microsatellite markers in papaya (Carica papaya L.)

Plant Molecular Biology Reporter

Volumn 28, Issue 3, 2010, Pages 519-530

  de Oliveira, Eder Jorge ^a   Amorim, Vanusia Batista Oliveira ^a   Matos, Edneide Luciana Santiago ^b   Costa, Juliana Leles ^b   da Silva Castellen, Milene ^a   Pádua, Juliano Gomes ^c   Dantas, Jorge Luiz Loyola ^a  

^a EMBRAPA CERRADOS   (Brazil)

^b UNIVERSIDADE FEDERAL DO RECÔNCAVO DA BAHIA   (Brazil)

^c EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

Author keywords

Breeding; Germplasm; Microsatellites; Papaya; Polymorphism

Indexed keywords

CARICA PAPAYA;

EID: 77952099051     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-010-0180-6     Document Type: Article

References (64)

1. Alvizo VHF, Rojkind MC (1987) Resistencia al virus mancha anular del papaya en Carica cauliflora. Rev Mex Fitopat 5: 61-62.
2. Aradhya MK, Manshardt RM, Zee F, Morden CW (1999) A phylogenetic analysis of the genus Carica L (Caricaceae) based on restriction fragment length variation in a cpDNA intergenic spacer region. Genet Resour Crop Evol 46: 579-586.
3. Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9: 208-218.
4. Badillo VM (2000) Carica L vs Vasconcella St Hil (Caricaceae): con la rehabilitación de este úlltimo. Ernstia 10: 74-79.
5. Baumung R, Simianer H, Hoffmann I (2004) Genetic diversity studies in farm animals - a survey. J Anim Breed Genet 121: 361-373.
6. Brondani RPV, Brondani C, Tarchini R, Grattapaglia D (1998) Development characterization and mapping of microsattelite markers in Eucalyptus grandis and E. urophylla. Theor Appl Genet 97: 816-827.
7. Carrasco B, Avila P, Perez-Diaz J, Muñoz P, Garcia R, Lavandero B, Zurita-Silva A, Retamales JB, Caligari PDS (2009) Genetic structure of highland papayas (Vasconcellea pubescens (Lenné et C Koch) Badillo) cultivated along a geographic gradient in Chile as revealed by Inter Simple Sequence Repeats (ISSR). Genet Resour Crop Evol 56: 331-337.
8. Collevatti RG, Brondani RV, Grattapaglia D (1999) Development and characterisation of microsatellite markers for genetic analysis of a Brazilian endangered tree species Caryocar brasiliense. Heredity 83: 748-756.
9. Condit R, Hubbel SP (1991) Abundance and DNA sequence of two-base repeat regions in tropical tree genomes. Genome 34: 66-71.
10. Creste S, Tulmann Neto A, Figueira A (2001) Detection of single sequence repeat polymorfisms in denaturing polyacrylamide sequencing gels by silver staining. Plant Mol Biol Rep 19: 299-306.
11. Deputy JC, Ming R, Ma H, Liu Z, Fitch MMM, Wang M, Manshardt R, Stiles JI (2002) Molecular markers for sex determination in papaya (Carica papaya L.). Theor Appl Genet 106: 107-111.
12. Dillon S, Ramage C, Drew R, Ashmore S (2005) Genetic mapping of a PRSV-P resistance gene in "highland papaya" based on inheritance of RAF markers. Euphytica 145: 11-23.
13. Dow BD, Ashley MV (1996) Microsatellite analysis of seed dispersal and sapling parentage in bur oak Quercus macrocarpa. Mol Ecol 5: 615-627.
14. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
15. Drew RA, O'Brien CM, Magdalita PM (1998) Development of interspecific Carica hybrids. Acta Hortic 461: 285-292.
16. Eustice M, Yu Q, Lai CW, Hou S, Thimmapuram J, Liu L, Alam M, Moore PH, Presting GG, Ming R (2008) Development and application of microsatellite markers for genomic analysis of papaya. Tree Genet Genomes 4: 333-341.
17. Faostat: The United Nations: Food and Agriculture Organization of The United Nations 2007 Available via: http://faostatfaoorg/site/567/defaultaspx#ancor Accessed 04 June 2009.
18. Ferguson ME, Burow MD, Schultz SR, Bramel PJ, Paterson AH, Kresovich S, Mitchell S (2004) Microsatellite identification and characterization in peanut (Arachis hypogaea L). Theor Appl Genet 108: 1064-1070.
19. Gianfranceschi L, Seglias N, Tarchini R, Komjanc M, Gessler C (1998) Simple sequence repeats for the genetic analysis of apple. Theor Appl Genet 96: 1069-1076.
20. Guilford P, Prakash S, Zhu JM, Rikkerink E, Gardiner S, Bassett H, Forster R (1997) Microsatellites in Malus × domestica (apple): abundance polymorphism and cultivar identification. Theor Appl Genet 94: 249-254.
21. Hamrick JL, Godt MJ (1996) Conservation genetics of endemic plant species. In: Avise JC, Hamrick JL (eds) Conservation genetics case histories from nature. Chapman and Hall, New York USA, pp 281-304.
22. Horovitz S, Jiménez H (1967) Cruzamientos interespecificos e intergenericos en Caricaceas y sus implicaciones fitotecnicas. Agron Trop 17: 323-344.
23. Jansen J (2005) Construction of linkage maps in full-sib families of diploid outbreeding species by minimizing the number of recombinations in hidden inheritance vectors. Genetics 170: 2013-2025.
24. Jobin-Decor MP, Graham GC, Henry RJ, Drew RA (1997) RAPD and isozyme analysis of genetic relationships between Carica papaya and wild relatives. Genet Resour Crop Evol 44: 471-477.
25. Karp A (2002) The new genetic Era: will it help us in managing genetic diversity? In: Engels JMM, Ramanatha Rao V, Brown AHD, Jackson MT (eds) Managing plant genetic diversity. IPGRI, Rome, pp 43-56.
26. Kim M, Moore P, Zee F, Fitch MMM, Steiger D, Manshardt R, Paull R, Drew R, Sekioka T, Ming R (2002) Genetic diversity of Carica papaya as revealed by AFLP markers. Genome 45: 503-512.
27. Kyndt T, Haegeman A, van Glabeke S, Maertens I, van Droogenbroeck B, Roldán-Ruiz I, Gheysen G (2005) Isolation and characterization of microsatellite loci in the highland papaya Vasconcelle × heilbornii V. Badillo (Caricaceae). Mol Ecol Notes 5: 590-592.
28. Kyndt T, van Droogenbroeck B, Haegeman A, Roldán-Ruiz I, Gheysen G (2006) Cross-species microsatellite amplification in Vasconcellea and related genera and their use in germplasm classification. Genome 49: 786-798.
29. Liang F, Deng Q, Wang Y, Xiong Y, Jin D, Li J, Wang B (2004) Molecular marker-assisted selection for yield-enhancing genes in the progeny of "9311 × O rufipogon" using SSR. Euphytica 139: 159-165.
30. Liu K, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21: 2128-2129.
31. Liu Z, Moore PH, Ma H, Ackerman CM, Makandar R, Yu Q, Pear HM, Kim MS, Charlton JW, Stiles JI, Zee FT, Paterson AH, Ming R (2004) A primitive Y chromosome in papaya marks incipient sex chromosome evolution. Nature 427: 348-352.
32. Lowe A, Harris S, Ashton P (2004) Ecological genetics: design analysis and application. Blackwell Publishing, Oxford.
33. Luo ZW, Hackett CA, Bradshaw JE, Mcnicol JW, Milbourne D (2001) Construction of a genetic linkage map in tetraploid species using molecular markers. Genetics 157: 1369-1385.
34. Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Mol Ecol 3: 91-99.
35. Manifesto M, Schlatter AR, Hopp HE, Suárez EY, Dubcovsky J (2001) Quantitative evaluation of genetic diversity in wheat germplasm using molecular markers. Crop Sci 41: 682-690.
36. Martins-Lopes P, Lima-Brito J, Gomes S, Meirinhos J, Santos L, Guedes-Pinto H (2007) RAPD and ISSR molecular markers in Olea europaea L: genetic variability and molecular cultivar identification. Genet Resour Crop Evol 54: 117-128.
37. Milczarski P, Banek-Tabor A, Lebiecka K, Stojaowski S, Mysków B, Masojc P (2007) New genetic map of rye composed of PCR-based molecular markers and its alignment with the reference map of the DS2 × RXL10 intercross. J Appl Genet 48: 11-24.
38. Moretzsohn MC, Leoi L, Proite K, Guimaraes PM, Leal-Bertioli SCM, Gimanes MA, Martin WS, Valls JFM, Grattapaglia D, Bertioli D (2005) A microsatellite-based gene-rich linkage map for the AA genome of Arachis (Fabaceae). Theor Appl Genet 111: 1060-1071.
39. Morshidi M (1998) Genetic control of isozymes in Carica papaya L. Theor Appl Genet 103: 89-94.
40. Nishijima W (1994) Papaya. In: Ploetz RC, Zentmyer GA, Nishijima WT, Rohrbach KG, Ohr HD (eds) Compendium of tropical fruit disease. American Phytopath Soc Press, St. Paul, Minnesota, pp 54-70.
41. Ocampo Pérez J, Dambier D, Ollitrault P, d'Eeckenbrugge GC, Brottier P, Froelicher Y, Risterucci AM (2006) Microsatellite markers in Carica papaya L: isolation characterization and transferability to Vasconcellea species. Mol Ecol Notes 6: 212-217.
42. Ocampo Pérez J, d'Eeckenbrugge GC, Risterucci AM, Dambier D, Ollitrault P (2007) Papaya genetic diversity assessed with microsatellite markers in germplasm from the Caribbean Region. Acta Hortic 740: 93-101.
43. Oliveira EJ, Marin ALA, Borém A, Fagundes SA, Barros EG, Moreira MA (2005) Molecular-marker assisted selection for development of common bean lines resistant to angular leaf spot. Plant Breed 124: 572-575.
44. Oliveira EJ, Dantas JLL, Castellen MS, Machado MD (2008a) Identificação de microssatélites para o mamoeiro por meio da exploração do banco de dados de DNA. Rev Bras Frutic 30: 841-845.
45. Oliveira EJ, Vieira MLC, Garcia AAF, Munhoz CF, Margarido GRA, Consoli L, Matta FP, Moraes MC (2008b) An integrated molecular map of yellow passion fruit based on simultaneous maximum-likelihood estimation of linkage and linkage phases. J Am Soc Hortic Sci 133: 35-41.
46. Paniego N, Echaide M, Marianne M, Ferrandez L, Tolales S, Faccio P, Fuxan I, Carrera M, Zandomeni R, Suarez E, Hopp HE (2002) Microsatellite isolation and characterization in sunflower (Helianthus annuus L). Genome 45: 34-43.
47. 4 reveals sex-specic differences in papaya. Theor Appl Genet 99: 1047-1052.
48. Powell W, Machray GC, Provan J (1996) Polymorphism revealed by simple sequence repeats. Trends Plant Sci 1: 215-222.
49. Rafalski JA, Tingey SV (1993) Genetic diagnostics in plant breeding: RAPDs microsatellites and machines. Trends Genet 9: 275-279.
50. Rallo P, Dorado G, Martín A (2000) Development of simple sequence repeats (SSRs) in olive tree (Olea europaea L). Theor Appl Genet 101: 984-989.
51. Ren J, Lu L, Liu X, Tao Z, Zhang C, Wang D, Shen J, Liu W, Tian Y, Zhu Z (2008) Paternity assessment: application on estimation of breeding value in body-weight at first egg trait of egg-laying duck (Anas platyrhynchos). Mol Biol Rep. doi: 10. 1007/s11033-008-9432-z.
52. Santos SC, Ruggiero C, Silva CLSP, Lemos EGM (2003) A microsatellite library for Carica papaya L cv Sunrise Solo. Rev Bras Frutic 25: 263-267.
53. Scheldeman X, van Damme P, Urena Alvarez JV, Romero M (2003) Horticultural potential of Andean fruit crops exploring their centre of origin. Acta Hortic 598: 97-102.
54. Sondur SN, Manshardt RM, Stiles JI (1996) A genetic linkage map of papaya based on randomly amplified polymorphic DNA markers. Theor Appl Genet 93: 547-553.
55. Stajner N, Jakse J, Kozjak P, Javornik B (2005) The isolation and characterisation of microsatellites in hop (Humulus lupulus L). Plant Sci 168: 213-221.
56. Stiles JI, Lemme C, Sondur S, Morshidi MB, Manshardt R (1993) Using randomly amplified polymorphic DNA for evaluating genetic relationships among papaya cultivars. Theor Appl Genet 85: 697-701.
57. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4. Mol Biol Evol 24: 1596-1599.
58. Tan SC, Weinheimer EA (1976) The isoenzyme patterns of developing fruit and leaf of papaya (Carica papaya L). Sains Malays 5: 7-14.
59. van Droogenbroeck B, Breyne P, Gotghebeur P, Romeijn-Peeters E, Kyndt T, Gheysen G (2002) AFLP analysis of genetic relationships among papaya and its wild relatives (Caricaceae) from Ecuador. Theor Appl Genet 105: 289-297.
60. van Droogenbroeck B, Kyndt T, Maertens I, Romeijn-Peeters E, Scheldeman X, Romero-Motochi J, van Damme P, Goetghebeur P, Gheysen G (2004) Phylogenetic analysis of the highland papayas (Vasconcellea) and allied genera (Caricaceae) using PCR-RFLP. Theor Appl Genet 108: 1473-1486.
61. Wang X, Wadl PA, Rinehart TA, ScheZer BE, Windham MT, Spiers JM, Johnson DH, Trigiano RN (2009) A linkage map for Xowering dogwood (Cornus Xorida L) based on microsatellite markers. Euphytica 165: 165-175.
62. Yonemaru J-I, Ando T, Mizubayashi T, Kasuga S, Matsumoto T, Yano M (2009) Development of genome-wide simple sequence repeat markers using whole-genome shotgun sequences of sorghum (Sorghum bicolor (L) Moench). DNA Res 16: 187-193.
63. Zhivotovsky LA (1999) Estimating population structure in diploids with multilocus dominant DNA markers. Mol Ecol 8: 907-913.
64. Zhou H-F, Xie Z-W, Ge S (2003) Microsatellite analysis of genetic diversity and population genetic structure of a wild rice (Oryza rufipogon Griff) in China. Theor Appl Genet 107: 332-339.