Mechanistic insight into the function of the C-terminal PKD domain of the collagenolytic serine protease deseasin MCP-01 from deep sea Pseudoalteromonas sp. SM9913: Binding of the PKD domain to collagen results in collagen swelling but does not unwind the collagen triple helix

Journal of Biological Chemistry

Volumn 285, Issue 19, 2010, Pages 14285-14291

  Wang, Yu Kai ^a   Zhao, Guo Yan ^a   Li, Yang ^a   Chen, Xiu Lan ^a   Xie, Bin Bin ^a   Su, Hai Nan ^a   Lv, Yao Hui ^a   He, Hai Lun ^a   Liu, Hong ^a   Hu, Jun ^b   Zhou, Bai Cheng ^a   Zhang, Yu Zhong ^a  

^a SHANDONG UNIVERSITY   (China)

^b SHANGHAI INSTITUTE OF APPLIED PHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AFM OBSERVATION; CATALYTIC DOMAINS; COLLAGEN BINDING DOMAIN; COLLAGEN SURFACE; COLLAGEN TRIPLE HELIX; COLLAGENOLYSIS; DEEP SEA; FUNCTIONAL MECHANISMS; GELATINASE; MATRIX; METALLOPROTEASES; MICRO-FIBRILS; POSITIVE CHARGES; PSEUDOALTEROMONAS; SEM; SEM OBSERVATION; SERINE PROTEASE; TEMPERATURE DEPENDENT; TRIPLE HELIXES;

AMINO ACIDS; ATOMIC FORCE MICROSCOPY; ATOMIC SPECTROSCOPY; CIRCULAR DICHROISM SPECTROSCOPY; DICHROISM; IMAGE STORAGE TUBES; MAMMALS; MONOMERS; PHOSPHATASES; SCANNING ELECTRON MICROSCOPY; ZETA POTENTIAL;

COLLAGEN;

COLLAGEN; DESEASIN MCP 01; GELATINASE; MATRIX METALLOPROTEINASE; PROTEIN KINASE D; SERINE PROTEINASE; UNCLASSIFIED DRUG;

ARTICLE; ATOMIC FORCE MICROSCOPY; CARBOXY TERMINAL SEQUENCE; CIRCULAR DICHROISM; COLLAGEN DEGRADATION; CONTROLLED STUDY; DEEP SEA; ENZYME ACTIVITY; FIBER; NONHUMAN; PARTICLE SIZE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PSEUDOALTEROMONAS; SCANNING ELECTRON MICROSCOPY; SURFACE CHARGE; TEMPERATURE DEPENDENCE; THERMOSTABILITY; TRIPLE HELIX; ZETA POTENTIAL;

CIRCULAR DICHROISM; COLLAGEN TYPE I; ENDOPEPTIDASES; MICROSCOPY, ATOMIC FORCE; PROTEIN FOLDING; PSEUDOALTEROMONAS;

BACTERIA (MICROORGANISMS); MAMMALIA; PSEUDOALTEROMONAS SP.;

EID: 77951989369     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.087023     Document Type: Article

References (33)

1. Gluecksmann-Kuis, M. A., Tayber, O., Woolf, E. A., Bougueleret, L., Deng, N., Alperin, G. D., Iris, F., and Hawkins, F. (1995) Cell 81, 289-298
2. Bycroft, M., Bateman, A., Clarke, J., Hamill, S. J., Sandford, R., Thomas, R. L., and Chothia, C. (1999) EMBO J. 18, 297-305
3. Jing, H., Takagi, J., Liu, J. H., Lindgren, S., Zhang, R. G., Joachimiak, A., Wang, J. H., and Springer, T. A. (2002) Structure 10, 1453-1464
4. Perrakis, A., Tews, I., Dauter, Z., Oppenheim, A. B., Chet, I., Wilson, K. S., and Vorgias, C. E. (1994) Structure 2, 1169-1180
5. Orikoshi, H., Nakayama, S., Hanato, C., Miyamoto, K., and Tsujibo, H. (2005) J. Appl. Microbiol. 99, 551-557
6. Ahsan, M. M., Kimura, T., Karita, S., Sakka, K., and Ohmiya, K. (1996) J. Bacteriol. 178, 5732-5740
7. Oda, K., Ito, M., Uchida, K., Shibano, Y., Fukuhara, K., and Takahashi, S. (1996) J. Biochem. 120, 564-572
8. Miyamoto, K., Nukui, E., Itoh, H., Sato, T., Kobayashi, T., Imada, C., Watanabe, E., Inamori, Y., and Tsujibo, H. (2002) J. Bacteriol. 184, 1865-1872
9. Chen, X. L., Xie, B. B., Lu, J. T., He, H. L., and Zhang, Y. Z. (2007) Microbiology 153, 2116-2125
10. Zhao, G. Y., Chen, X. L., Zhao, H. L., Xie, B. B., Zhou, B. C., and Zhang, Y. Z. (2008) J. Biol. Chem. 263, 36100-36107
11. Bauer, M., Kube, M., Teeling, H., Richter, M., Lombardot, T., Allers, E., Würdemann, C. A., Quast, C., Kuhl, H., Knaust, F., Woebken, D., Bischof, K., Mussmann, M., Choudhuri, J. V., Meyer, F., Reinhardt, R., Amann, R. I., and Glöckner, F. O. (2006) Environ. Microbiol. 8, 2201-2213
12. Kadler, K. (1994) Protein Profile 1, 519-638
13. Kadler, K. E., Holmes, D. F., Trotter, J. A., and Chapman, J. A. (1996) Biochem. J. 316, 1-11
14. Perumal, S., Antipova, O., and Orgel, J. P. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 2824-2829
15. Gomis-Rüth, F. X., Gohlke, U., Betz, M., Knäuper, V., Murphy, G., López-Otín, C., and Bode, W. (1996) J. Mol. Biol. 264, 556-566
16. Tam, E. M., Wu, Y. I., Butler, G. S., Stack, M. S., and Overall, C. M. (2002) J. Biol. Chem. 277, 39005-39014
17. Clark, I. M., and Cawston, T. E. (1989) Biochem. J. 263, 201-206
18. Knäuper, V., Cowell, S., Smith, B., López-Otin, C., O'Shea, M., Morris, H., Zardi, L., and Murphy, G. (1997) J. Biol. Chem. 272, 7608-7616
19. Monaco, S., Sparano, V., Gioia, M., Sbardella, D., Di-Pierro, D., Marini, S., and Coletta, M. (2006) Protein Sci. 15, 2805-2815
20. Wilson, J. J., Matsushita, O., Okabe, A., and Sakon, J. (2003) EMBO J. 22, 1743-1752
21. Itoi, Y., Horinaka, M., Tsujimoto, Y., Matsui, H., and Watanabe, K. (2006) J. Bacteriol. 188, 6572-6579
22. Lowry, O. H., Rosebrough, N. J., Farr, A. L., and Randall, R. J. (1951) J. Biol. Chem. 193, 265-275
23. Usha, R., and Ramasami, T. (2002) J. App. Poly. Sci. 84, 975-982
24. Poenitzsch, V. Z., and Musselman, I. H. (2006) Microsc. Microanal. 12, 221-227
25. Ikoma, T., Kobayashi, H., Tanaka, J., Walsh, D., and Mann, S. (2003) Int. J. Biol. Macromol. 32, 199-204
26. Chung, L., Dinakarpandian, D., Yoshida, N., Lauer-Fields, J. L., Fields, G. B., Visse, R., and Nagase, H. (2004) EMBO J. 23, 3020-3030
27. Tam, E. M., Moore, T. R., Butler, G. S., and Overall, C. M. (2004) J. Biol. Chem. 279, 43336-43344
28. Nerenberg, P. S., Salsas-Escat, R., and Stultz, C. M. (2008) Proteins 70, 1154-1161
29. Shoulders, M. D., and Raines, R. T. (2009) Annu. Rev. Biochem. 78, 929-958
30. Buehler, M. J. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 12285-12290
31. Murphy, G., Allan, J. A., Willenbrock, F., Cockett, M. I., O'Connell, J. P., and Docherty, A. J. P. (1992) J. Biol. Chem. 267, 9612-9618
32. Overall, C. M. (2002) Mol. Biotechnol. 22, 51-86
33. De Souza, S. J., Pereira, H. M., Jacchieri, S., and Brentani, R. R. (1996) FASEB J. 10, 927-930