Comparison of gene expression profiling between bovine subcutaneous and intramuscular adipose tissues by serial analysis of gene expression

Cell Biology International

Volumn 34, Issue 1, 2010, Pages 125-133

  Bong, Jing Jong ^a   Cho, Kwang Keun ^a,b   Baik, Myunggi ^a  

^a National Institute of Animal Science   (South Korea)

^b Gyeongsang National University   (South Korea)

Author keywords

Adipose tissue; Gene expression profile; Korean cattle; Serial analysis of gene expression (SAGE)

Indexed keywords

ADENOSINE DIPHOSPHATE RIBOSYLATION FACTOR 1; COFILIN; CYCLIN DEPENDENT KINASE 5; CYSTEINE; DIACYLGLYCEROL ACYLTRANSFERASE; ELONGATION FACTOR 1ALPHA; FERRITIN; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; HEAT SHOCK PROTEIN; HEAT SHOCK PROTEIN 70; INOSITOL 1,4,5 TRISPHOSPHATE; LIPOCORTIN 2; LIPOCORTIN 5; PROTEIN N MYRISTOYLTRANSFERASE; PROTEIN N MYRISTOYLTRANSFERASE 2; THYMOSIN BETA4; THYROID HORMONE RECEPTOR; TROPONIN T; UNCLASSIFIED DRUG; ACYLTRANSFERASE; ELONGATION FACTOR 1; THYMOSIN; THYMOSIN BETA(4);

ADIPOSE TISSUE; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CELL DIFFERENTIATION; CONTROLLED STUDY; COW; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENE LIBRARY; GENE SEQUENCE; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PROADIPOCYTE; PROTEIN EXPRESSION; PROTEIN FUNCTION; REAL TIME POLYMERASE CHAIN REACTION; SERIAL ANALYSIS OF GENE EXPRESSION; SUBCUTANEOUS FAT; ANIMAL; CATTLE; CELL STRAIN 3T3; COMPARATIVE STUDY; DNA MICROARRAY; GENETICS; METABOLISM; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SUBCUTANEOUS TISSUE;

BOS; BOVINAE;

3T3-L1 CELLS; ACYLTRANSFERASES; ADIPOSE TISSUE; ANIMALS; CATTLE; DIACYLGLYCEROL O-ACYLTRANSFERASE; GENE EXPRESSION PROFILING; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PEPTIDE ELONGATION FACTOR 1; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SUBCUTANEOUS TISSUE; THYMOSIN; TROPONIN T;

EID: 77951899636     PISSN: 10656995     EISSN: 10958355     Source Type: Journal    
DOI: 10.1042/CBI20090046     Document Type: Article

References (42)

1. Aricett JA, Rotta PP, do Prado RM, Perotto D, Moletta JL, Matsushita M, et al. Carcass characteristics, chemical composition and fatty acid profile of longissimus muscle of bulls and steers finished in a pasture systems. Asian-Aust J Anim Sci 2008;21:1441-1448.
2. Bradshaw AD, Graves DC, Motamed K, Sage EH. SPARC-null mice exhibit increased adiposity without significant differences in overall body weight. Proc Natl Acad Sci 2003;100:6045-6050.
3. Brekken RA, Sage EH. SPARC, a matricellular protein: at the crossroads of cell-matrix communication. Matrix Biol 2001;19:816-827.
4. Chavey C, Boucher J, Monthouë l-Kartmann MN, Sage EH, Castan-Laurell I, Valet P, et al. Regulation of secreted protein acidic and rich in cysteine during adipose conversion and adipose tissue hyperplasia. Obesity 2006;14:1890-897.
5. Chen SH, Wu PS, Chou CH, Yan YT, Liu H, Weng SY, et al. A knockout mouse approach reveals that TCTP functions as an essential factor for cell proliferation and survival in a tissue- or cell type-specific manner. Mol Biol Cell 2007;18:2525-2532.
6. Choi KC, Roh SG, Hishikawa D, Miyahara H, Kuno M, Tsuzuki H, et al. Differential expression of the nonmuscle-type cofilin gene between subcutaneous and visceral adipose tissue. Biosci Biotechnol Biochem 2003;67:2262-2265.
7. Chomczynski P, Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate phenol-chloroform extraction. Anal Biochem 1987;162:156-159.
8. 2 phosphorylation mediates cell scattering and branching morphogenesis via cofilin activation. Mol Cell Biol 2008;28:1029-1040.
9. Farazi TA, Waksman G, Gordon JI. The biology and enzymology of protein N-myristoylation. J Biol Chem 2002;276:39501-39504.
10. Gachet Y, Tournier S, Lee M, Lazaris-Karatzas A, Poulton T, Bommer UA. The growth-related, translationally controlled protein P23 has properties of a tubulin binding protein and associates transiently with microtubules during the cell cycle. J Cell Sci 1999;112:1257-1271.
11. Gerke V, Moss SE. Annexins and membrane dynamics. Biochim Biophys Acta 1997;1357:129-124.
12. 2+ signaling to membrane dynamics. Nat Rev Mol Cell Biol 2005;6:449-461.
13. He Y, Kastin AJ, Hsuchou H, Pan W. The cdk5/p35 kinases modulate leptin-induced STAT3 signaling. J Mol Neurosci 2009;39:49-58.
14. Hood RL, Allen E. Influence of sex and postmortem aging on intramuscular and subcutaneous bovine lipids. J Food Sci 1971;36:786-790.
15. Hood RL, Allen CE. Cellularity of bovine adipose tissue. J Lipid Res 1973;14:605-610.
16. Hou XG, Moser S, Sarr MG, Thompson GB, Que FG, Jensen MD. Visceral and subcutaneous adipose tissue diacylglycerol acyltransferase activity in humans. Obesity 2009;17:1129-1134.
17. Huang J, Hsia SH, Imamura T, Usui I, Olefsky JM. Annexin II is a thiazolidinedione-responsive gene involved in insulin-induced glucose transporter isoform 4 translocation in 3T3-L1 adipocytes. Endocrinology 2004;145:1579-1586.
18. Jeon JT, Carlborg O, Törnsten A, Giuffra E, Amarger V, Chardon P, et al. A paternally expressed QTL affecting skeletal and cardiac muscle mass in pigs maps to the IGF2 locus. Nat Genet 1999;21:157-158.
19. Judge M, Alerle E, Forrest J, Hedrick H, Markel R. Principle of meat science, 2nd Ed. Kendall/Hunt Publishing Co; 1989.
20. Kim H, Chi Y, Chung K, Kim K, Choi Y, Baik M. Differential response of obese gene expression from fasting in bovine adipose tissues. Biosci Biotechnol Biochem 2000;64:2240-2242.
21. Liemann S, Lewit-Bentley A. Annexins: a novel family of calcium- and membrane-binding proteins in search of a function. Structure 1995;3:233-237.
22. Lozeman FJ, Middleton CK, Deng J, Kazala EC, Verhaege C, Mir PS, et al. Characterization of microsomal diacylglycerol acyltransferase activity from bovine adipose and muscle tissue. Comp Biochem Physiol B Biochem Mol Biol 2001;130:105-115.
23. Machinal F, Dieudonne MN, Leneveu MC, Pecquery R, Giudicelli Y. In vivo and in vitro ob gene expression and leptin secretion in rat adipocytes: evidence for a regional specific regulation by sex steroid hormones. Endocrinology 1999;140:1567-1574.
24. May SG, Burney NS, Wilson JJ, Savell JW, Herring AD, Lunt DK, et al. Lipogenic activity of intramuscular and subcutaneous adipose tissues from steers produced by different generations of Angus sires. J Anim Sci 1995;73:1310-1317.
25. Nezer C, Moreau L, Brouwers B, Coppieters W, Detilleux J, Hanset R, et al. An imprinted QTL with major effect on muscle mass and fat deposition maps to the IGF2 locus in pigs. Nat Genet 1999;21:155-156.
26. Nie J, Sage EH. SPARC inhibits adipogenesis by its enhancement of beta-catenin signaling. J Biol Chem 2009;284:1279-1290.
27. Oling F, Bergsma-Schutter W, Brisson A. Trimers, dimers of trimers, and trimers of trimers are common building blocks of annexin A5 two-dimensional crystals. J Struct Biol 2001;133:55-63.
28. Pothoven MA, Beitz DC, Zimmerli A. Fatty acid compositions of bovine adipose tissue and of in vitro lipogenesis. J Nutr 1974;104:430-433.
29. Puskás LG, Nagy ZB, Giricz Z, Onody A, Csonka C, Kitajka K, et al. Cholesterol diet-induced hyperlipidemia influences gene expression pattern of rat hearts: a DNA microarray study. FEBS Lett 2004;562:99-104.
30. Rajala RV, Datla RS, Moyana TN, Kakkar R, Carlsen SA, Sharma RK. N-Myristoyltransferase. Mol Cell Biochem 2000;204:135-155.
31. Raynal P, Pollard HB, Cushman SW, Guerre-Millo M. Unique subcellular distribution of five annexins in resting and insulinstimulated rat adipose cells. Biochem Biophys Res Commun 1996;225:116-121.
32. Resh MD. Fatty acylation of proteins: new insights into membrane targeting of myristoylated and palmitoylated proteins. Biochim Biophys Acta 1999;1451:1-16.
33. SAS Institute Inc. Base SAS 9.1.3 Procedures Guide. SAS OnlineDoc 9.1.3. Available at http://support.sas.com/documentation/onlinedoc/sas9doc.html; 2002-2006.
34. Siebert BD, Deland MP, Pitchford WS. Breed differences in the fatty acid composition of subcutaneous and intramuscular lipid of early and late maturing, grain-finished cattle. Aust J Agric Res 1996;47:943-952.
35. Sturdivant CA, Lunt DK, Smith GC, Smith SB. Fatty acid composition of subcutaneous and intramuscular adipose tissues and M. longissimus dorsi of Wagyu cattle. Meat Sci 1992;32:449-458.
36. Van Genderen HO, Kenis H, Hofstra L, Narula J, Reutelingsperger CP. Extracellular annexin A5: functions of phosphatidylserine-binding and two-dimensional crystallization. Biochim Biophys Acta 2008;1783:953-963.
37. Velculescu VE, Zhang L, Vogelstein B, Kinzler KW. Serial analysis of gene expression. Science 1995;270:484-487.
38. Wang J, Jin JP. Primary structure and developmental acidic to basic transition of 13 alternatively spliced mouse fast skeletal muscle troponin T isoforms. Gene 1997;193:105-114.
39. Wang YH, Bower NI, Reverter A, Tan SH, De Jager N, Wang R, et al. Gene expression patterns during intramuscular fat development in cattle. J Anim Sci 2009;87:119-130.
40. Westerling DB, Hedrick HB. Fatty acid composition of bovine lipids as influenced by diet, sex and anatomical location and relationship to sensory characteristics. J Anim Sci 1979;48:1343-1348.
41. Wilcox C, Hu JS, Olson EN. Acylation of proteins with myristic acid occurs cotranslationally. Science 1987;238:1275-1278.
42. Xu A, Bellamy AR, Taylor JA. Expression of translationally controlled tumour protein is regulated by calcium at both the transcriptional and post-transcriptional level. Biochem J 1999;342:683-689.