-
1
-
-
53249144283
-
PRIMe: A Web site that assembles tools for metabolomics and transcriptomics
-
Akiyama K, Chikayama E, Yuasa H, Shimada Y, Tohge T, Shinozaki K, Hirai MY, Sakurai T, Kikuchi J, Saito K (2008) PRIMe: a Web site that assembles tools for metabolomics and transcriptomics. In Silico Biol 8: 339-345.
-
(2008)
In Silico Biol
, vol.8
, pp. 339-345
-
-
Akiyama, K.1
Chikayama, E.2
Yuasa, H.3
Shimada, Y.4
Tohge, T.5
Shinozaki, K.6
Hirai, M.Y.7
Sakurai, T.8
Kikuchi, J.9
Saito, K.10
-
2
-
-
34247953814
-
More is different
-
Anderson PW (1972) More is different. Science 177: 393-396.
-
(1972)
Science
, vol.177
, pp. 393-396
-
-
Anderson, P.W.1
-
3
-
-
34249697574
-
Approaches for extracting practical information from gene co-expression networks in plant biology
-
Aoki K, Ogata Y, Shibata D (2007) Approaches for extracting practical information from gene co-expression networks in plant biology. Plant Cell Physiol 48: 381-390.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 381-390
-
-
Aoki, K.1
Ogata, Y.2
Shibata, D.3
-
4
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
5
-
-
33846064113
-
NCBI GEO: Mining tens of millions of expression profiles-database and tools update
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Edgar R (2007) NCBI GEO: mining tens of millions of expression profiles-database and tools update. Nucleic Acids Res 35: D760-D765.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Edgar, R.10
-
6
-
-
0002226683
-
Pajek program for large network analysis
-
Batagelj V, Mrvar A (1998) Pajek program for large network analysis. Connections 21: 47-57.
-
(1998)
Connections
, vol.21
, pp. 47-57
-
-
Batagelj, V.1
Mrvar, A.2
-
7
-
-
58149215723
-
A glucosinolate metabolism pathway in living plant cells mediates broad-spectrum antifungal defense
-
Bednarek P, Pislewska-Bednarek M, Svatos A, Schneider B, Doubsky J, Mansurova M, Humphry M, Consonni C, Panstruga R, Sanchez-Vallet A, Molina A, Schulze-Lefert P (2009) A glucosinolate metabolism pathway in living plant cells mediates broad-spectrum antifungal defense. Science 323: 101-106.
-
(2009)
Science
, vol.323
, pp. 101-106
-
-
Bednarek, P.1
Pislewska-Bednarek, M.2
Svatos, A.3
Schneider, B.4
Doubsky, J.5
Mansurova, M.6
Humphry, M.7
Consonni, C.8
Panstruga, R.9
Sanchez-Vallet, A.10
Molina, A.11
Schulze-Lefert, P.12
-
8
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD (2007) Integration of biological networks and gene expression data using Cytoscape. Nat Protoc 2: 2366-2382.
-
(2007)
Nat Protoc
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
Christmas, R.7
Avila-Campilo, I.8
Creech, M.9
Gross, B.10
Hanspers, K.11
Isserlin, R.12
Kelley, R.13
Killcoyne, S.14
Lotia, S.15
Maere, S.16
Morris, J.17
Ono, K.18
Pavlovic, V.19
Pico, A.R.20
Vailaya, A.21
Wang, P.L.22
Adler, A.23
Conklin, B.R.24
Hood, L.25
Kuiper, M.26
Sander, C.27
Schmulevich, I.28
Schwikowski, B.29
Warner, G.J.30
Ideker, T.31
Bader, G.D.32
more..
-
9
-
-
0347968038
-
NASCArrays: A repository for microarray data generated by NASC's transcriptomics service
-
Craigon DJ, James N, Okyere J, Higgins J, Jotham J, May S (2004) NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res 32: D575-D577.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Craigon, D.J.1
James, N.2
Okyere, J.3
Higgins, J.4
Jotham, J.5
May, S.6
-
11
-
-
34547526914
-
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis
-
Hirai MY, Sugiyama K, Sawada Y, Tohge T, Obayashi T, Suzuki A, Araki R, Sakurai N, Suzuki H, Aoki K, Goda H, Nishizawa OI, Shibata D, Saito K (2007) Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc Natl Acad Sci USA 104: 6478-6483.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 6478-6483
-
-
Hirai, M.Y.1
Sugiyama, K.2
Sawada, Y.3
Tohge, T.4
Obayashi, T.5
Suzuki, A.6
Araki, R.7
Sakurai, N.8
Suzuki, H.9
Aoki, K.10
Goda, H.11
Nishizawa, O.I.12
Shibata, D.13
Saito, K.14
-
12
-
-
36248982591
-
Distinct functions for the two PsbP-like proteins PPL1 and PPL2 in the chloroplast thylakoid lumen of Arabidopsis
-
Ishihara S, Takabayashi A, Ido K, Endo T, Ifuku K, Sato F (2007) Distinct functions for the two PsbP-like proteins PPL1 and PPL2 in the chloroplast thylakoid lumen of Arabidopsis. Plant Physiol 145: 668-679.
-
(2007)
Plant Physiol
, vol.145
, pp. 668-679
-
-
Ishihara, S.1
Takabayashi, A.2
Ido, K.3
Endo, T.4
Ifuku, K.5
Sato, F.6
-
13
-
-
47249158473
-
NDF6: A thylakoid protein specific to terrestrial plants is essential for activity of chloroplastic NAD(P)H dehydrogenase in Arabidopsis
-
Ishikawa N, Takabayashi A, Ishida S, Hano Y, Endo T, Sato F (2008) NDF6: a thylakoid protein specific to terrestrial plants is essential for activity of chloroplastic NAD(P)H dehydrogenase in Arabidopsis. Plant Cell Physiol 49: 1066-1073.
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 1066-1073
-
-
Ishikawa, N.1
Takabayashi, A.2
Ishida, S.3
Hano, Y.4
Endo, T.5
Sato, F.6
-
14
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res 36: D480-484.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
15
-
-
70349999416
-
Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis
-
Kinoshita K, Obayashi T (2009) Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. Bioinformatics 25: 2677-2684.
-
(2009)
Bioinformatics
, vol.25
, pp. 2677-2684
-
-
Kinoshita, K.1
Obayashi, T.2
-
16
-
-
70349215646
-
RiceArrayNet: A database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice
-
Lee TH, Kim YK, Pham TT, Song SI, Kim JK, Kang KY, An G, Jung KH, Galbraith DW, Kim M, Yoon UH, Nahm BH (2009) RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice. Plant Physiol 151: 16-33.
-
(2009)
Plant Physiol
, vol.151
, pp. 16-33
-
-
Lee, T.H.1
Kim, Y.K.2
Pham, T.T.3
Song, S.I.4
Kim, J.K.5
Kang, K.Y.6
An, G.7
Jung, K.H.8
Galbraith, D.W.9
Kim, M.10
Yoon, U.H.11
Nahm, B.H.12
-
17
-
-
70450225789
-
Data integration for plant genomics-exemplars from the integration of Arabidopsis thaliana databases
-
Lysenko A, Hindle MM, Taubert J, Saqi M, Rawlings CJ (2009) Data integration for plant genomics-exemplars from the integration of Arabidopsis thaliana databases. Brief Bioinform 10: 676-693.
-
(2009)
Brief Bioinform
, vol.10
, pp. 676-693
-
-
Lysenko, A.1
Hindle, M.M.2
Taubert, J.3
Saqi, M.4
Rawlings, C.J.5
-
18
-
-
33747814803
-
Arabidopsis Co-expression Tool (ACT): Web server tools for microarray-based gene expression analysis
-
Manfield IW, Jen C-H, Pinney JW, Michalopoulos I, Bradford JR, Gilmartin PM, Westhead DR (2006) Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res 34: W504-W509.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Manfield, I.W.1
Jen, C.-H.2
Pinney, J.W.3
Michalopoulos, I.4
Bradford, J.R.5
Gilmartin, P.M.6
Westhead, D.R.7
-
19
-
-
53749102865
-
Regulation and evolution of chlorophyll metabolism
-
Masuda T, Fujita Y (2008) Regulation and evolution of chlorophyll metabolism. Photochem Photobiol Sci 7: 1131-1149.
-
(2008)
Photochem Photobiol Sci
, vol.7
, pp. 1131-1149
-
-
Masuda, T.1
Fujita, Y.2
-
21
-
-
73249114746
-
Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression
-
Obayashi T, Kinoshita K (2009) Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression. DNA Res 16: 249-260.
-
(2009)
DNA Res
, vol.16
, pp. 249-260
-
-
Obayashi, T.1
Kinoshita, K.2
-
22
-
-
4444379049
-
Distinctive features of plant organs characterized by global analysis of gene expression in Arabidopsis
-
Obayashi T, Okegawa T, Sasaki-Sekimoto Y, Shimada H, Masuda T, Asamizu E, Nakamura Y, Shibata D, Tabata S, Takamiya K, Ohta H (2004) Distinctive features of plant organs characterized by global analysis of gene expression in Arabidopsis. DNA Res 11: 11-25.
-
(2004)
DNA Res
, vol.11
, pp. 11-25
-
-
Obayashi, T.1
Okegawa, T.2
Sasaki-Sekimoto, Y.3
Shimada, H.4
Masuda, T.5
Asamizu, E.6
Nakamura, Y.7
Shibata, D.8
Tabata, S.9
Takamiya, K.10
Ohta, H.11
-
23
-
-
33846061087
-
ATTED-II: A database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
-
Obayashi T, Kinoshita K, Nakai K, Shibaoka M, Hayashi S, Saeki M, Shibata D, Saito K, Ohta H (2007) ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res 35: D863-D869.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Obayashi, T.1
Kinoshita, K.2
Nakai, K.3
Shibaoka, M.4
Hayashi, S.5
Saeki, M.6
Shibata, D.7
Saito, K.8
Ohta, H.9
-
24
-
-
38549180536
-
COXPRESdb: A database of coexpressed gene networks in mammals
-
Obayashi T, Hayashi S, Shibaoka M, Saeki M, Ohta H, Kinoshita K (2008) COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res 36: D77-D82.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Obayashi, T.1
Hayashi, S.2
Shibaoka, M.3
Saeki, M.4
Ohta, H.5
Kinoshita, K.6
-
25
-
-
58149197587
-
ATTED-II provides coexpressed gene networks for Arabidopsis
-
Obayashi T, Hayashi S, Saeki M, Ohta H, Kinoshita K (2009) ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res 37: D987-D991.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Obayashi, T.1
Hayashi, S.2
Saeki, M.3
Ohta, H.4
Kinoshita, K.5
-
26
-
-
76349090950
-
A gene co-expression database for understanding biological process in soybean
-
Ogata Y, Suzuki H, Shibata D (2009a) A gene co-expression database for understanding biological process in soybean. Plant Biotechnol 26: 503-507.
-
(2009)
Plant Biotechnol
, vol.26
, pp. 503-507
-
-
Ogata, Y.1
Suzuki, H.2
Shibata, D.3
-
27
-
-
72449176838
-
A database for poplar gene co-expression analysis for systematic understanding of biological processes, including stress responses
-
Ogata Y, Suzuki H, Shibata D (2009b) A database for poplar gene co-expression analysis for systematic understanding of biological processes, including stress responses. J Wood Sci 55: 395-400.
-
(2009)
J Wood Sci
, vol.55
, pp. 395-400
-
-
Ogata, Y.1
Suzuki, H.2
Shibata, D.3
-
28
-
-
66449114329
-
A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis
-
Okazaki Y, Shimojima M, Sawada Y, Toyooka K, Narisawa T, Mochida K, Tanaka H, Matsuda F, Hirai A, Hirai MY, Ohta H, Saito K (2009) A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis. Plant Cell 21: 892-909.
-
(2009)
Plant Cell
, vol.21
, pp. 892-909
-
-
Okazaki, Y.1
Shimojima, M.2
Sawada, Y.3
Toyooka, K.4
Narisawa, T.5
Mochida, K.6
Tanaka, H.7
Matsuda, F.8
Hirai, A.9
Hirai, M.Y.10
Ohta, H.11
Saito, K.12
-
29
-
-
75949116051
-
Bioinformatic and systems biology tools to generate testable models of signaling pathways and their targets
-
Pitzschke A, Hirt H (2010) Bioinformatic and systems biology tools to generate testable models of signaling pathways and their targets. Plant Physiol 152: 460-469.
-
(2010)
Plant Physiol
, vol.152
, pp. 460-469
-
-
Pitzschke, A.1
Hirt, H.2
-
30
-
-
9144231310
-
ArrayExpress: A public database of gene expression data at EBI
-
Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M, Contrino S, Vilo J, Abeygunawardena N, Mukherjee G, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Sansone SA (2003) ArrayExpress: a public database of gene expression data at EBI. C R Biol 326: 1075-1078.
-
(2003)
C R Biol
, vol.326
, pp. 1075-1078
-
-
Rocca-Serra, P.1
Brazma, A.2
Parkinson, H.3
Sarkans, U.4
Shojatalab, M.5
Contrino, S.6
Vilo, J.7
Abeygunawardena, N.8
Mukherjee, G.9
Holloway, E.10
Kapushesky, M.11
Kemmeren, P.12
Lara, G.G.13
Oezcimen, A.14
Sansone, S.A.15
-
31
-
-
37849020436
-
Decoding genes with coexpression networks and metabolomics-'majority report by precogs
-
Saito K, Hirai MY, Yonekura-Sakakibara K (2008) Decoding genes with coexpression networks and metabolomics-'majority report by precogs'. Trends Plant Sci 13: 36-43.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 36-43
-
-
Saito, K.1
Hirai, M.Y.2
Yonekura-Sakakibara, K.3
-
32
-
-
58849120099
-
Over-expression of transcription associated factor genes coexpressed with genes of the mevalonate pathway, upstream of isoprenoid biosynthesis, in Arabidopsis cultured cells
-
Sano R, Ogata Y, Suzuki H, Ogawa Y, Dansako T, Sakurai N, Okazaki K, Aoki K, Saito K, Shibata D (2008) Over-expression of transcription associated factor genes coexpressed with genes of the mevalonate pathway, upstream of isoprenoid biosynthesis, in Arabidopsis cultured cells. Plant Biotechnol 25: 583-587.
-
(2008)
Plant Biotechnol
, vol.25
, pp. 583-587
-
-
Sano, R.1
Ogata, Y.2
Suzuki, H.3
Ogawa, Y.4
Dansako, T.5
Sakurai, N.6
Okazaki, K.7
Aoki, K.8
Saito, K.9
Shibata, D.10
-
33
-
-
67651111980
-
Omics-based approaches to methionine side chain elongation in Arabidopsis: Characterization of the genes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase
-
Sawada Y, Kuwahara A, Nagano M, Narisawa T, Sakata A, Saito K, Hirai MY (2009a) Omics-based approaches to methionine side chain elongation in Arabidopsis: characterization of the genes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase. Plant Cell Physiol 50: 1181-1190.
-
(2009)
Plant Cell Physiol
, vol.50
, pp. 1181-1190
-
-
Sawada, Y.1
Kuwahara, A.2
Nagano, M.3
Narisawa, T.4
Sakata, A.5
Saito, K.6
Hirai, M.Y.7
-
34
-
-
70349899130
-
Arabidopsis bile acid: Sodium symporter family protein 5 is involved in methionine-derived glucosinolate biosynthesis
-
Sawada Y, Toyooka K, Kuwahara A, Sakata A, Nagano M, Saito K, Hirai MY (2009b) Arabidopsis bile acid: sodium symporter family protein 5 is involved in methionine-derived glucosinolate biosynthesis. Plant Cell Physiol 50: 1579-1586.
-
(2009)
Plant Cell Physiol
, vol.50
, pp. 1579-1586
-
-
Sawada, Y.1
Toyooka, K.2
Kuwahara, A.3
Sakata, A.4
Nagano, M.5
Saito, K.6
Hirai, M.Y.7
-
35
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Scholkopf B, Weigel D, Lohmann JU (2005) A gene expression map of Arabidopsis thaliana development. Nat Genet 37: 501-506.
-
(2005)
Nat Genet
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Scholkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
36
-
-
51549093662
-
CressExpress: A tool for large-scale mining of expression data from Arabidopsis
-
Srinivasasainagendra V, Page GP, Mehta T, Coulibaly I, Loraine AE (2008) CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol 147: 1004-1016.
-
(2008)
Plant Physiol
, vol.147
, pp. 1004-1016
-
-
Srinivasasainagendra, V.1
Page, G.P.2
Mehta, T.3
Coulibaly, I.4
Loraine, A.E.5
-
37
-
-
12344328434
-
CSB.DB: A comprehensive systems-biology database
-
Steinhauser D, Usadel B, Luedemann A, Thimm O, Kopka J (2004) CSB. DB: a comprehensive systems-biology database. Bioinformatics 20: 3647-3651.
-
(2004)
Bioinformatics
, vol.20
, pp. 3647-3651
-
-
Steinhauser, D.1
Usadel, B.2
Luedemann, A.3
Thimm, O.4
Kopka, J.5
-
38
-
-
74449084030
-
Stomagen positively regulates stomatal density in Arabidopsis
-
Sugano SS, Shimada T, Imai Y, Okawa K, Tamai A, Mori M, Hara-Nishimura I (2010) Stomagen positively regulates stomatal density in Arabidopsis. Nature 463: 241-244.
-
(2010)
Nature
, vol.463
, pp. 241-244
-
-
Sugano, S.S.1
Shimada, T.2
Imai, Y.3
Okawa, K.4
Tamai, A.5
Mori, M.6
Hara-Nishimura, I.7
-
39
-
-
38549144806
-
The Arabidopsis Information Resource (TAIR): Gene structure and function annotation
-
Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E (2008) The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res 36: D1009-D1014.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
Berardini, T.Z.4
Garcia-Hernandez, M.5
Foerster, H.6
Li, D.7
Meyer, T.8
Muller, R.9
Ploetz, L.10
Radenbaugh, A.11
Singh, S.12
Swing, V.13
Tissier, C.14
Zhang, P.15
Huala, E.16
-
40
-
-
58349120608
-
Three novel subunits of Arabidopsis chloroplastic NAD(P)H dehydrogenase identified by bioinformatic and reverse genetic approaches
-
Takabayashi A, Ishikawa N, Obayashi T, Ishida S, Obokata J, Endo T, Sato F (2009) Three novel subunits of Arabidopsis chloroplastic NAD(P)H dehydrogenase identified by bioinformatic and reverse genetic approaches. Plant J 57: 207-219.
-
(2009)
Plant J
, vol.57
, pp. 207-219
-
-
Takabayashi, A.1
Ishikawa, N.2
Obayashi, T.3
Ishida, S.4
Obokata, J.5
Endo, T.6
Sato, F.7
-
41
-
-
46949090817
-
The DNA replication checkpoint aids survival of plants deficient in the novel replisome factor ETG1
-
Takahashi N, Lammens T, Boudolf V, Maes S, Yoshizumi T, De Jaeger G, Witters E, Inze D, De Veylder L (2008) The DNA replication checkpoint aids survival of plants deficient in the novel replisome factor ETG1. EMBO J 27: 1840-1851.
-
(2008)
EMBO J
, vol.27
, pp. 1840-1851
-
-
Takahashi, N.1
Lammens, T.2
Boudolf, V.3
Maes, S.4
Yoshizumi, T.5
de Jaeger, G.6
Witters, E.7
Inze, D.8
de Veylder, L.9
-
42
-
-
34247598751
-
Phytochemical genomics in Arabidopsis thaliana: A case study for functional identification of flavonoid biosynthesis genes
-
Tohge T, Yonekura-Sakakibara K, Niida R, Watanabe-Takahashi A, Saito K (2007) Phytochemical genomics in Arabidopsis thaliana: a case study for functional identification of flavonoid biosynthesis genes. Pure Apple Chem 79: 811-823.
-
(2007)
Pure Apple Chem
, vol.79
, pp. 811-823
-
-
Tohge, T.1
Yonekura-Sakakibara, K.2
Niida, R.3
Watanabe-Takahashi, A.4
Saito, K.5
-
43
-
-
27244440204
-
KaPPA-view: A web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps
-
Tokimatsu T, Sakurai N, Suzuki H, Ohta H, Nishitani K, Koyama T, Umezawa T, Misawa N, Saito K, Shibata D (2005) KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol 138: 1289-1300.
-
(2005)
Plant Physiol
, vol.138
, pp. 1289-1300
-
-
Tokimatsu, T.1
Sakurai, N.2
Suzuki, H.3
Ohta, H.4
Nishitani, K.5
Koyama, T.6
Umezawa, T.7
Misawa, N.8
Saito, K.9
Shibata, D.10
-
44
-
-
22044437388
-
The botany array resource: E-northerns, expression angling, and promoter analyses
-
Toufighi K, Brady M, Austin R, Ly E, Provart N (2005) The botany array resource: e-northerns, expression angling, and promoter analyses. Plant J 43: 153-163.
-
(2005)
Plant J
, vol.43
, pp. 153-163
-
-
Toufighi, K.1
Brady, M.2
Austin, R.3
Ly, E.4
Provart, N.5
-
45
-
-
70449115789
-
Co-expression tools for plant biology: Opportunities for hypothesis generation and caveats
-
Usadel B, Obayashi T, Mutwil M, Giorgi FM, Bassel GW, Tanimoto M, Chow A, Steinhauser D, Persson S, Provart NJ (2009) Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ 32: 1633-1651.
-
(2009)
Plant Cell Environ
, vol.32
, pp. 1633-1651
-
-
Usadel, B.1
Obayashi, T.2
Mutwil, M.3
Giorgi, F.M.4
Bassel, G.W.5
Tanimoto, M.6
Chow, A.7
Steinhauser, D.8
Persson, S.9
Provart, N.J.10
-
46
-
-
53549122990
-
Function and dysfunction of the PI system in membrane trafficking
-
Vicinanza M, D'Angelo G, Di Campli A, De Matteis MA (2008) Function and dysfunction of the PI system in membrane trafficking. EMBO J 27: 2457-2470.
-
(2008)
EMBO J
, vol.27
, pp. 2457-2470
-
-
Vicinanza, M.1
D'Angelo, G.2
Di Campli, A.3
de Matteis, M.A.4
-
47
-
-
57749091765
-
NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana
-
Yamada K, Nagano AJ, Nishina M, Hara-Nishimura I, Nishimura M (2008) NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana. Plant Cell 20: 2529-2540.
-
(2008)
Plant Cell
, vol.20
, pp. 2529-2540
-
-
Yamada, K.1
Nagano, A.J.2
Nishina, M.3
Hara-Nishimura, I.4
Nishimura, M.5
-
48
-
-
34447502537
-
Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics
-
Yonekura-Sakakibara K, Tohge T, Niida R, Saito K (2007) Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics. J Biol Chem 282: 14932-14941.
-
(2007)
J Biol Chem
, vol.282
, pp. 14932-14941
-
-
Yonekura-Sakakibara, K.1
Tohge, T.2
Niida, R.3
Saito, K.4
-
49
-
-
57749089675
-
Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis
-
Yonekura-Sakakibara K, Tohge T, Matsuda F, Nakabayashi R, Takayama H, Niida R, Watanabe-Takahashi A, Inoue E, Saito K (2008) Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. Plant Cell 20: 2160-2176.
-
(2008)
Plant Cell
, vol.20
, pp. 2160-2176
-
-
Yonekura-Sakakibara, K.1
Tohge, T.2
Matsuda, F.3
Nakabayashi, R.4
Takayama, H.5
Niida, R.6
Watanabe-Takahashi, A.7
Inoue, E.8
Saito, K.9
-
50
-
-
67651114800
-
PosMed (Positional Medline): Prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning
-
Yoshida Y, Makita Y, Heida N, Asano S, Matsushima A, Ishii M, Mochizuki Y, Masuya H, Wakana S, Kobayashi N, Toyoda T (2009) PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning. Nucleic Acids Res 37: W147-W152.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Yoshida, Y.1
Makita, Y.2
Heida, N.3
Asano, S.4
Matsushima, A.5
Ishii, M.6
Mochizuki, Y.7
Masuya, H.8
Wakana, S.9
Kobayashi, N.10
Toyoda, T.11
|