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Volumn 84, Issue 10, 2010, Pages 5025-5031

ORF157 from the archaeal virus Acidianus filamentous virus 1 defines a new class of nuclease

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; NUCLEASE; NUCLEOTIDYLTRANSFERASE;

EID: 77951443560     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.01664-09     Document Type: Article
Times cited : (14)

References (50)
  • 2
    • 0033105094 scopus 로고    scopus 로고
    • Conserved domains in DNA repair proteins and evolution of repair systems
    • DOI 10.1093/nar/27.5.1223
    • Aravind, L., D. R. Walker, and E. V. Koonin. 1999. Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res. 27:1223-1242. (Pubitemid 29206430)
    • (1999) Nucleic Acids Research , vol.27 , Issue.5 , pp. 1223-1242
    • Aravind, L.1    Walker, D.R.2    Koonin, E.V.3
  • 3
    • 0028120546 scopus 로고
    • Atomic structure of the RuvC resolvase: A Holliday junction-specific endonuclease from E. coli
    • DOI 10.1016/0092-8674(94)90280-1
    • Ariyoshi, M., D. G. Vassylyev, H. Iwasaki, H. Nakamura, H. Shinagawa, and K. Morikawa. 1994. Atomic structure of the RuvC resolvase: a Holliday junction-specific endonuclease from E. coli. Cell 78:1063-1072. (Pubitemid 24292333)
    • (1994) Cell , vol.78 , Issue.6 , pp. 1063-1072
    • Ariyoshi, M.1    Vassylyev, D.G.2    Iwasaki, H.3    Nakamura, H.4    Shinagawa, H.5    Morikawa, K.6
  • 5
    • 58149122981 scopus 로고    scopus 로고
    • Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1
    • Basta, T., J. Smyth, P. Forterre, D. Prangishvili, and X. Peng. 2009. Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1. Mol. Microbiol. 71:23-34.
    • (2009) Mol. Microbiol. , vol.71 , pp. 23-34
    • Basta, T.1    Smyth, J.2    Forterre, P.3    Prangishvili, D.4    Peng, X.5
  • 6
    • 0242300042 scopus 로고    scopus 로고
    • AFV1, a novel virus infecting hyperthermophilic archaea of the genus Acidianus
    • DOI 10.1016/S0042-6822(03)00481-1
    • Bettstetter, M., X. Peng, R. A. Garrett, and D. Prangishvili. 2003. AFV1, a novel virus infecting hyperthermophilic archaea of the genus acidianus. Virology 315:68-79. (Pubitemid 37340051)
    • (2003) Virology , vol.315 , Issue.1 , pp. 68-79
    • Bettstetter, M.1    Peng, X.2    Garrett, R.A.3    Prangishvili, D.4
  • 9
    • 66149105112 scopus 로고    scopus 로고
    • Particle assembly and ultrastructural features associated with replication of the lytic archaeal virus sulfolobus turreted icosahedral virus
    • Brumfield, S. K., A. C. Ortmann, V. Ruigrok, P. Suci, T. Douglas, and M. J. Young. 2009. Particle assembly and ultrastructural features associated with replication of the lytic archaeal virus sulfolobus turreted icosahedral virus. J. Virol. 83:5964-5970.
    • (2009) J. Virol. , vol.83 , pp. 5964-5970
    • Brumfield, S.K.1    Ortmann, A.C.2    Ruigrok, V.3    Suci, P.4    Douglas, T.5    Young, M.J.6
  • 11
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computing Project No. 4
    • Collaborative Computing Project No. 4. 1994. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50:760-763.
    • (1994) Acta Crystallogr. D Biol. Crystallogr. , vol.50 , pp. 760-763
  • 12
    • 0025908083 scopus 로고
    • Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase
    • Davies, J. F., Jr., Z. Hostomska, Z. Hostomsky, S. R. Jordan, and D. A. Matthews. 1991. Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase. Science 252:88-95. (Pubitemid 21916941)
    • (1991) Science , vol.252 , Issue.5002 , pp. 88-95
    • Davies III, J.F.1    Hostomska, Z.2    Hostomsky, Z.3    Jordan, S.R.4    Matthews, D.A.5
  • 13
    • 0028584269 scopus 로고
    • Crystal structure of the catalytic domain of HIV-1 integrase: Similarity to other polynucleotidyl transferases
    • Dyda, F., A. B. Hickman, T. M. Jenkins, A. Engelman, R. Craigie, and D. R. Davies. 1994. Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases. Science 266:1981-1986.
    • (1994) Science , vol.266 , pp. 1981-1986
    • Dyda, F.1    Hickman, A.B.2    Jenkins, T.M.3    Engelman, A.4    Craigie, R.5    Davies, D.R.6
  • 16
    • 34250202202 scopus 로고    scopus 로고
    • Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays
    • DOI 10.1016/j.virol.2007.03.033, PII S0042682207001444
    • Fröls, S., P. M. Gordon, M. A. Panlilio, C. Schleper, and C. W. Sensen. 2007. Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays. Virology 365:48-59. (Pubitemid 46907227)
    • (2007) Virology , vol.365 , Issue.1 , pp. 48-59
    • Frols, S.1    Gordon, P.M.K.2    Panlilio, M.A.3    Schleper, C.4    Sensen, C.W.5
  • 17
    • 0032961270 scopus 로고    scopus 로고
    • ESPript: Analysis of multiple sequence alignments in PostScript
    • DOI 10.1093/bioinformatics/15.4.305
    • Gouet, P., E. Courcelle, D. I. Stuart, and F. Metoz. 1999. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15:305-308. (Pubitemid 29213756)
    • (1999) Bioinformatics , vol.15 , Issue.4 , pp. 305-308
    • Gouet, P.1    Courcelle, E.2    Stuart, D.I.3    Metoz, F.4
  • 20
    • 0027879008 scopus 로고
    • Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
    • Kabsch, W. 1993. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Applied Crystallography. 26:795-800.
    • (1993) J. Applied Crystallography , vol.26 , pp. 795-800
    • Kabsch, W.1
  • 24
    • 7744223325 scopus 로고    scopus 로고
    • Transcription of the rod-shaped viruses SIRV1 and SIRV2 of the hyperthermophilic archaeon Sulfolobus
    • DOI 10.1128/JB.186.22.7745-7753.2004
    • Kessler, A., A. B. Brinkman, J. van der Oost, and D. Prangishvili. 2004. Transcription of the rod-shaped viruses SIRV1 and SIRV2 of the hyperthermophilic archaeon sulfolobus. J. Bacteriol. 186:7745-7753. (Pubitemid 39463741)
    • (2004) Journal of Bacteriology , vol.186 , Issue.22 , pp. 7745-7753
    • Kessler, A.1    Brinkman, A.B.2    Van Der Oost, J.3    Prangishvili, D.4
  • 25
    • 30044450170 scopus 로고    scopus 로고
    • Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses
    • Khayat, R., L. Tang, E. T. Larson, C. M. Lawrence, M. Young, and J. E. Johnson. 2005. Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses. Proc. Natl. Acad. Sci. USA 102:18944-18949.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 18944-18949
    • Khayat, R.1    Tang, L.2    Larson, E.T.3    Lawrence, C.M.4    Young, M.5    Johnson, J.E.6
  • 26
    • 20244382943 scopus 로고    scopus 로고
    • Structure of D-63 from sulfolobus spindle-shaped virus 1: Surface properties of the dimeric four-helix bundle suggest an adaptor protein function
    • DOI 10.1128/JVI.78.14.7438-7442.2004
    • Kraft, P., D. Kummel, A. Oeckinghaus, G. H. Gauss, B. Wiedenheft, M. Young, and C. M. Lawrence. 2004. Structure of D-63 from sulfolobus spindle-shaped virus 1: surface properties of the dimeric four-helix bundle suggest an adaptor protein function. J. Virol. 78:7438-7442. (Pubitemid 38915889)
    • (2004) Journal of Virology , vol.78 , Issue.14 , pp. 7438-7442
    • Kraft, P.1    Kummel, D.2    Oeckinghaus, A.3    Gauss, G.H.4    Wiedenheft, B.5    Young, M.6    Lawrence, C.M.7
  • 27
    • 6344294221 scopus 로고    scopus 로고
    • Crystal structure of F-93 from Sulfolobus spindle-shaped virus 1, a winged-helix DNA binding protein
    • DOI 10.1128/JVI.78.21.11544-11550.2004
    • Kraft, P., A. Oeckinghaus, D. Kummel, G. H. Gauss, J. Gilmore, B. Wiedenheft, M. Young, and C. M. Lawrence. 2004. Crystal structure of F-93 from Sulfolobus spindle-shaped virus 1, a winged-helix DNA binding protein. J. Virol. 78:11544-11550. (Pubitemid 39390740)
    • (2004) Journal of Virology , vol.78 , Issue.21 , pp. 11544-11550
    • Kraft, P.1    Oeckinghaus, A.2    Kummel, D.3    Gauss, G.H.4    Gilmore, J.5    Wiedenheft, B.6    Young, M.7    Lawrence, C.M.8
  • 28
    • 35548988777 scopus 로고    scopus 로고
    • A winged-helix protein from Sulfolobus turreted icosahedral virus points toward stabilizing disulfide bonds in the intracellular proteins of a hyperthermophilic virus
    • Larson, E. T., B. Eilers, S. Menon, D. Reiter, A. Ortmann, M. J. Young, and C. M. Lawrence. 2007. A winged-helix protein from Sulfolobus turreted icosahedral virus points toward stabilizing disulfide bonds in the intracellular proteins of a hyperthermophilic virus. Virology 368:249-261.
    • (2007) Virology , vol.368 , pp. 249-261
    • Larson, E.T.1    Eilers, B.2    Menon, S.3    Reiter, D.4    Ortmann, A.5    Young, M.J.6    Lawrence, C.M.7
  • 29
    • 34248522373 scopus 로고    scopus 로고
    • A new DNA binding protein highly conserved in diverse crenarchaeal viruses
    • DOI 10.1016/j.virol.2007.01.027, PII S0042682207000505
    • Larson, E. T., B. J. Eilers, D. Reiter, A. C. Ortmann, M. J. Young, and C. M. Lawrence. 2007. A new DNA binding protein highly conserved in diverse crenarchaeal viruses. Virology 363:387-396. (Pubitemid 46764946)
    • (2007) Virology , vol.363 , Issue.2 , pp. 387-396
    • Larson, E.T.1    Eilers, B.J.2    Reiter, D.3    Ortmann, A.C.4    Young, M.J.5    Lawrence, C.M.6
  • 30
    • 33746210125 scopus 로고    scopus 로고
    • Structure of A197 from Sulfolobus turreted icosahedral virus: A crenarchaeal viral glycosyltransferase exhibiting the GT-A fold
    • Larson, E. T., D. Reiter, M. Young, and C. M. Lawrence. 2006. Structure of A197 from Sulfolobus turreted icosahedral virus: a crenarchaeal viral glycosyltransferase exhibiting the GT-A fold. J. Virol. 80:7636-7644.
    • (2006) J. Virol. , vol.80 , pp. 7636-7644
    • Larson, E.T.1    Reiter, D.2    Young, M.3    Lawrence, C.M.4
  • 31
    • 0027169515 scopus 로고
    • Main-chain bond lengths and bond angles in protein structures
    • Laskowski, R. A., D. S. Moss, and J. M. Thornton. 1993. Main-chain bond lengths and bond angles in protein structures. J. Mol. Biol. 231:1049-1067.
    • (1993) J. Mol. Biol. , vol.231 , pp. 1049-1067
    • Laskowski, R.A.1    Moss, D.S.2    Thornton, J.M.3
  • 32
    • 25844494491 scopus 로고    scopus 로고
    • MutH complexed with hemi- and unmethylated DNAs: Coupling base recognition and DNA cleavage
    • Lee, J. Y., J. Chang, N. Joseph, R. Ghirlando, D. N. Rao, and W. Yang. 2005. MutH complexed with hemi- and unmethylated DNAs: coupling base recognition and DNA cleavage. Mol. Cell 20:155-166.
    • (2005) Mol. Cell , vol.20 , pp. 155-166
    • Lee, J.Y.1    Chang, J.2    Joseph, N.3    Ghirlando, R.4    Rao, D.N.5    Yang, W.6
  • 34
    • 0035083849 scopus 로고    scopus 로고
    • Catalytic center of an archaeal type 2 ribonuclease H as revealed by X-ray crystallographic and mutational analyses
    • DOI 10.1110/ps.48001
    • Muroya, A., D. Tsuchiya, M. Ishikawa, M. Haruki, M. Morikawa, S. Kanaya, and K. Morikawa. 2001. Catalytic center of an archaeal type 2 ribonuclease H as revealed by X-ray crystallographic and mutational analyses. Protein Sci. 10:707-714. (Pubitemid 32240496)
    • (2001) Protein Science , vol.10 , Issue.4 , pp. 707-714
    • Muroya, A.1    Tsuchiya, D.2    Ishikawa, M.3    Haruki, M.4    Morikawa, M.5    Kanaya, S.6    Morikawa, K.7
  • 36
    • 0037115920 scopus 로고    scopus 로고
    • Structure and function of nucleases in DNA repair: Shape, grip and blade of the DNA scissors
    • DOI 10.1038/sj.onc.1206135
    • Nishino, T., and K. Morikawa. 2002. Structure and function of nucleases in DNA repair: shape, grip and blade of the DNA scissors. Oncogene 21:9022-9032. (Pubitemid 36110830)
    • (2002) Oncogene , vol.21 , Issue.58 REV. ISS. 8 , pp. 9022-9032
    • Nishino, T.1    Morikawa, K.2
  • 39
    • 0032964481 scopus 로고    scopus 로고
    • Automated protein model building combined with iterative structure refinement
    • Perrakis, A., R. Morris, and V. S. Lamzin. 1999. Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 6:458-463.
    • (1999) Nat. Struct. Biol. , vol.6 , pp. 458-463
    • Perrakis, A.1    Morris, R.2    Lamzin, V.S.3
  • 41
    • 0035883723 scopus 로고    scopus 로고
    • Structure and function of type II restriction endonucleases
    • Pingoud, A., and A. Jeltsch. 2001. Structure and function of type II restriction endonucleases. Nucleic Acids Res. 29:3705-3727. (Pubitemid 32910514)
    • (2001) Nucleic Acids Research , vol.29 , Issue.18 , pp. 3705-3727
    • Pingoud, A.1    Jeltsch, A.2
  • 42
    • 0345864027 scopus 로고    scopus 로고
    • The catalytic site atlas: A resource of catalytic sites and residues identified in enzymes using structural data
    • Porter, C. T., G. J. Bartlett, and J. M. Thornton. 2004. The catalytic site atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res. 32:D129-33.
    • (2004) Nucleic Acids Res. , vol.32
    • Porter, C.T.1    Bartlett, G.J.2    Thornton, J.M.3
  • 44
    • 33645087247 scopus 로고    scopus 로고
    • Evolutionary genomics of archaeal viruses: Unique viral genomes in the third domain of life
    • Prangishvili, D., R. A. Garrett, and E. V. Koonin. 2006. Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life. Virus Res. 117:52-67.
    • (2006) Virus Res. , vol.117 , pp. 52-67
    • Prangishvili, D.1    Garrett, R.A.2    Koonin, E.V.3
  • 45
    • 0029129435 scopus 로고
    • Structure of the bacteriophage Mu transposase core: A common structural motif for DNA transposition and retroviral integration
    • Rice, P., and K. Mizuuchi. 1995. Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integration. Cell 82:209-220.
    • (1995) Cell , vol.82 , pp. 209-220
    • Rice, P.1    Mizuuchi, K.2
  • 47
    • 37549039510 scopus 로고    scopus 로고
    • A short history of SHELX
    • Sheldrick, G. M. 2008. A short history of SHELX. Acta Crystallogr. A 64:112-122.
    • (2008) Acta Crystallogr. A , vol.64 , pp. 112-122
    • Sheldrick, G.M.1
  • 49
    • 0035182073 scopus 로고    scopus 로고
    • Use of TLS parameters to model anisotropic displacements in macromolecular refinement
    • Winn, M. D., M. N. Isupov, and G. N. Murshudov. 2001. Use of TLS parameters to model anisotropic displacements in macromolecular refinement. Acta Crystallogr. D Biol. Crystallogr. 57:122-133.
    • (2001) Acta Crystallogr. D Biol. Crystallogr. , vol.57 , pp. 122-133
    • Winn, M.D.1    Isupov, M.N.2    Murshudov, G.N.3


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