-
1
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: An overview
-
Baldi, P., Brunak, S., Chauvin, Y., Andersen, C. and Nielsen, H. (2000) 'Assessing the accuracy of prediction algorithms for classification: an overview', Bioinformatics, Vol.16, No.5, pp.412-424. (Pubitemid 30487963)
-
(2000)
Bioinformatics
, vol.16
, Issue.5
, pp. 412-424
-
-
Baldi, P.1
Brunak, S.2
Chauvin, Y.3
Andersen, C.A.F.4
Nielsen, H.5
-
2
-
-
33846665074
-
Fragile X related protein 1 isoforms differentially modulate the affinity of fragile X mental retardation protein for G-quartet RNA structure
-
DOI 10.1093/nar/gkl1021
-
Bechara, E., Davidovic, L., Melko, M., Bensaid, M., Tremblay, S., Grosgeorge, J., Khandjian, E.W., Lalli, E. and Bardoni, B. (2007) 'Fragile x related protein 1 isoforms differentially modulate the affinity of fragile x mental retardation protein for g-quartet RNA structure', Nucleic Acids Research, Vol.35, pp.299-306. (Pubitemid 46189854)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.1
, pp. 299-306
-
-
Bechara, E.1
Davidovic, L.2
Melko, M.3
Bensaid, M.4
Tremblay, S.5
Grosgeorge, J.6
Khandjian, E.W.7
Lalli, E.8
Bardoni, B.9
-
3
-
-
0033954256
-
The Protein Data Bank
-
Berman, H., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T., Weissig, H., Shindyalov, I. and Bourne, P. (2000) 'The protein data bank', Nucleic Acids Res., Vol.28, pp.235-242. (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
4
-
-
38849163717
-
Glycosylation site prediction using ensembles of Support Vector Machine classifiers
-
DOI 10.1186/1471-2105-8-438
-
Caragea, C., Sinapov, J., Silvescu, A., Dobbs, D. and Honavar, V. (2007) 'Glycosylation site prediction using ensembles of support vector machine classifiers', BMC Bioinformatics, Vol.8, No.438, pp.438-450. (Pubitemid 351189034)
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 438
-
-
Caragea, C.1
Sinapov, J.2
Silvescu, A.3
Dobbs, D.4
Honavar, V.5
-
5
-
-
18444383371
-
Protein families and RNArecognition
-
Chen, Y. and Varani, G. (2005) 'Protein families andRNArecognition', FEBS Journal, Vol.272, No.9, pp.2088-2097.
-
(2005)
FEBS Journal
, vol.272
, Issue.9
, pp. 2088-2097
-
-
Chen, Y.1
Varani, G.2
-
6
-
-
0002761958
-
Measurement of protein surface shape by solid angles
-
Connolly, M.L. (1986) 'Measurement of protein surface shape by solid angles', Journal of Molecular Graphics, Vol.4, No. 1, pp.3-6.
-
(1986)
Journal of Molecular Graphics
, vol.4
, Issue.1
, pp. 3-6
-
-
Connolly, M.L.1
-
7
-
-
0027159949
-
The molecular surface package
-
Connolly, M.L. (1993) 'The molecular surface package', J. Mol. Graph., Vol.11, No.2, pp.139-141.
-
(1993)
J. Mol. Graph.
, vol.11
, Issue.2
, pp. 139-141
-
-
Connolly, M.L.1
-
8
-
-
84951778046
-
Machine learning for sequential data: A review.
-
Lecture Notes in Computer Science
-
Dietterich, T.G. (2002) Machine learning for sequential data: A review. Structural, Syntactic, and Statistical Pattern Recognition, Lecture Notes in Computer Science, Vol.2396, pp.15-30.
-
(2002)
Structural, Syntactic, and Statistical Pattern Recognition
, vol.2396
, pp. 15-30
-
-
Dietterich, T.G.1
-
9
-
-
33847042739
-
Protein-RNA interactions: Structural analysis and functional classes
-
DOI 10.1002/prot.21211
-
Ellis, J., Broom, M. and Jones, S. (2007) 'Protein-RNA interactions: structural analysis and functional classes', Proteins, Vol.66, No.4, pp.903-911, http://www.citeulike.org/ user/jarasch/article/1205659 (Pubitemid 46273075)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.66
, Issue.4
, pp. 903-911
-
-
Ellis, J.J.1
Broom, M.2
Jones, S.3
-
10
-
-
33750992165
-
The cell biology of hiv-1 and other retroviruses
-
Freed, E.O. and Mouland, A.J. (2006) 'The cell biology of hiv-1 and other retroviruses', Retrovirology, Vol.3, No. 77, pp.77-86, http://www. retrovirology.com/content/3/1/77
-
(2006)
Retrovirology
, vol.3
, Issue.77
, pp. 77-86
-
-
Freed, E.O.1
Mouland, A.J.2
-
11
-
-
18244362861
-
A neural network method for identification of RNA-interacting residues in protein
-
Jeong, E., Chung, I-F. and Miyano, S. (2004) 'A neural network method for identification of RNA-interacting residues in protein', Genome Informatics, Vol.15, No.1, pp.105-116.
-
(2004)
Genome Informatics
, vol.15
, pp. 105-116
-
-
Jeong, E.1
Chung, I.-F.2
Miyano, S.3
-
13
-
-
0035865891
-
Protein-RNA interactions: A structural analysis
-
Jones, S., Daley, D.T.A., Luscombe, N.M., Berman, H.M. and Thornton, J.M. (2001) 'Protein-RNA interactions: a structural analysis', Nucleic Acids Research, Vol.29, No.4, pp.943-954. (Pubitemid 32162263)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.4
, pp. 943-954
-
-
Jones, S.1
Daley, D.T.A.2
Luscombe, N.M.3
Berman, H.M.4
Thornton, J.M.5
-
14
-
-
0042671357
-
Pre-mRNA splicing: Awash in a sea of proteins
-
Jurica, M.S. and Moore, M.J. (2003) 'Pre-mRNA splicing: awash in a sea of proteins', Mol. Cell, Vol.12, pp.5-14.
-
(2003)
Mol. Cell
, vol.12
, pp. 5-14
-
-
Jurica, M.S.1
Moore, M.J.2
-
15
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee, B. and Richards, F.M. (1971) 'The interpretation of protein structures: estimation of static accessibility', J. Mol. Biol., Vol.55, pp.379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
16
-
-
26444598454
-
Protein-nucleic acid recognition: Statistical analysis of atomic interactions and influence of DNA structure
-
DOI 10.1002/prot.20607
-
Lejeune, D., Delsaux, N., Charloteaux, B., Thomas, A. and Brasseur, R. (2005) 'Protein-nucleic acid recognition: statistical analysis of atomic interactions and influence of DNA structure', Proteins, Vol.61, No.2, pp.258-271, http://www3.interscience.wiley. com/journal/111083051/abstract (Pubitemid 41429134)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.61
, Issue.2
, pp. 258-271
-
-
Lejeune, D.1
Delsaux, N.2
Charloteaux, B.3
Thomas, A.4
Brasseur, R.5
-
17
-
-
0022347081
-
Fractal surfaces of proteins
-
Lewis, M. and Rees, D. (1985) 'Fractal surfaces of proteins', Science, Vol.230, No. 4730, pp.1163-1165. (Pubitemid 16170003)
-
(1985)
Science
, vol.230
, Issue.4730
, pp. 1163-1165
-
-
Lewis, M.1
Rees, D.C.2
-
19
-
-
3242802095
-
Learning to decode cognitive states from brain images
-
Mitchell, T., Hutchinson, R., Niculescu, R., Pereira, F., Wang, X., Just, M. and Newman, S. (2004) 'Learning to decode cognitive states from brain images', Machine Learning Journal, Vol.57, pp.145-175.
-
(2004)
Machine Learning Journal
, vol.57
, pp. 145-175
-
-
Mitchell, T.1
Hutchinson, R.2
Niculescu, R.3
Pereira, F.4
Wang, X.5
Just, M.6
Newman, S.7
-
20
-
-
24644502657
-
From birth to death: The complex lives of eukaryotic mRNAs
-
Moore, M.J. (2005) 'From birth to death: the complex lives of eukaryotic mRNAs', Science, Vol.309, pp.1514-1518.
-
(2005)
Science
, vol.309
, pp. 1514-1518
-
-
Moore, M.J.1
-
21
-
-
24644437810
-
RNA structure: Reading the ribosome
-
Noller, H.F. (2005) 'RNA structure: reading the ribosome', Science, Vol.309, pp.1508-1514.
-
(2005)
Science
, vol.309
, pp. 1508-1514
-
-
Noller, H.F.1
-
22
-
-
0036328545
-
CX, an algorithm that identifies protruding atoms in proteins
-
Pintar, A., Carugo, O. and Pongor, S. (2002) 'Cx, an algorithm that identifies protruding atoms in proteins', Bioinformatics, Vol.18, No.7, pp.980-984. (Pubitemid 34846481)
-
(2002)
Bioinformatics
, vol.18
, Issue.7
, pp. 980-984
-
-
Pintar, A.1
Carugo, O.2
Pongor, S.3
-
23
-
-
33746487738
-
Identifying interaction sites in 'recalcitrant' proteins: Predicted protein and RNA binding sites in rev proteins of hiv-1 and eiav agree with experimental data
-
Terribilini, M., Lee, J-H., Yan, C., Jernigan, R.L., Carpenter, S., Honavar, V. and Dobbs, D. (2006a) 'Identifying interaction sites in 'recalcitrant' proteins: predicted protein and RNA binding sites in rev proteins of hiv-1 and eiav agree with experimental data', Pacific Symposium on Biocomputing, Vol.11, pp.415-426, http://www.pubmedcentral.nih.gov/ articlerender.fcgi?artid=2553683
-
(2006)
Pacific Symposium on Biocomputing
, vol.11
, pp. 415-426
-
-
Terribilini, M.1
Lee, J.-H.2
Yan, C.3
Jernigan, R.L.4
Carpenter, S.5
Honavar, V.6
Dobbs, D.7
-
24
-
-
33746526551
-
Prediction of RNA binding sites in proteins from amino acid sequence
-
DOI 10.1261/rna.2197306
-
Terribilini, M., Lee, J-H., Yan, C., Jernigan, R.L., Honavar, V. and Dobbs, D. (2006b) 'Prediction of RNA binding sites in proteins from amino acid sequence', Bioinformatics, Vol.12, pp.1450-1462. (Pubitemid 44141524)
-
(2006)
RNA
, vol.12
, Issue.8
, pp. 1450-1462
-
-
Terribilini, M.1
Lee, J.-H.2
Yan, C.3
Jernigan, R.L.4
Honavar, V.5
Dobbs, D.6
-
25
-
-
34547560560
-
Rnabindr: A server for analyzing and predicting RNA-binding sites in proteins
-
Terribilini, M., Sander, J.D., Lee, J-H., Zaback, P., Jernigan, R.L., Honavar, V. and Dobbs, D. (2007) 'Rnabindr: a server for analyzing and predicting RNA-binding sites in proteins', Nucleic Acids Research, Vol.35, No.2, pp.1-7.
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.2
, pp. 1-7
-
-
Terribilini, M.1
Sander, J.D.2
Lee, J.-H.3
Zaback, P.4
Jernigan, R.L.5
Honavar, V.6
Dobbs, D.7
-
26
-
-
44949131681
-
Structural characterization of RNA-binding sites of proteins: Preliminary results
-
Towfic, F., Gemperline, D.C., Caragea, C., Wu, F., Dobbs, D. and Caragea, C. (2007) 'Structural characterization of RNA-binding sites of proteins: preliminary results', Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, pp.60-66, http://ieeexplore.ieee.org/ xpls/abs-all.jsp?arnumber=4425401
-
(2007)
Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops
, pp. 60-66
-
-
Towfic, F.1
Gemperline, D.C.2
Caragea, C.3
Wu, F.4
Dobbs, D.5
Caragea, C.6
-
27
-
-
0034823943
-
Statistical analysis of atomic contacts at RNA-protein interfaces
-
DOI 10.1002/jmr.534
-
Treger, M., and Westhof, E. (2001) 'Statistical analysis of atomic contacts at RNA-protein interfaces', J. Mol. Recognit., Vol.14, No.4, pp.199-214. (Pubitemid 32824541)
-
(2001)
Journal of Molecular Recognition
, vol.14
, Issue.4
, pp. 199-214
-
-
Treger, M.1
Westhof, E.2
-
28
-
-
49049113659
-
Analysis of protein protein dimeric interfaces
-
Wu, F., Towfic, F., Dobbs, D. and Honavar, V. (2007) 'Analysis of protein protein dimeric interfaces', Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine, pp.35-41.
-
(2007)
Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine
, pp. 35-41
-
-
Wu, F.1
Towfic, F.2
Dobbs, D.3
Honavar, V.4
|