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Volumn 78, Issue 7, 2010, Pages 1652-1661

Dimerization of protein G B1 domain at low pH. A conformational switch caused by loss or a single hydrogen bond

Author keywords

strand; Chemical shift; Helix c terminal cap; NMR; Relaxation dispersion; Titration

Indexed keywords

PROTEIN G;

EID: 77951245190     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.22683     Document Type: Article
Times cited : (11)

References (43)
  • 3
    • 0033945087 scopus 로고    scopus 로고
    • The role of backbone conformational heat capacity in protein stability: Temperature dependent dynamics of the B1 domain of streptococcal protein G
    • Seewald MJ, Pichumani. K, Stowell C, Tibbals BV, Regan L, Stone MJ. The role of backbone conformational heat capacity in protein stability: temperature dependent dynamics of the B1 domain of streptococcal protein G. Protein Sci 2000;9:1177-1193.
    • (2000) Protein Sci , vol.9 , pp. 1177-1193
    • Seewald, M.J.1    Pichumani, K.2    Stowell, C.3    Tibbals, B.V.4    Regan, L.5    Stone, M.J.6
  • 5
    • 27644503431 scopus 로고    scopus 로고
    • An experimental investigation of conformational fluctuations in proteins G and L
    • Tunnicliffe RB, Waby JL, Williams RJ, Williamson MP. An experimental investigation of conformational fluctuations in proteins G and L. Structure 2005;13:1677-1684.
    • (2005) Structure , vol.13 , pp. 1677-1684
    • Tunnicliffe, R.B.1    Waby, J.L.2    Williams, R.J.3    Williamson, M.P.4
  • 6
  • 7
    • 0033871567 scopus 로고    scopus 로고
    • Critical role of β-hairpin formation in protein G folding
    • McCallister EL, Aim E, Baker D. Critical role of β-hairpin formation in protein G folding. Nat Struct Biol 2000;7:669-673.
    • (2000) Nat Struct Biol , vol.7 , pp. 669-673
    • McCallister, E.L.1    Aim, E.2    Baker, D.3
  • 8
    • 0036785556 scopus 로고    scopus 로고
    • The origins of asymmetry in the folding transition states of protein L and protein G
    • Karanicolas J, Brooks CL. The origins of asymmetry in the folding transition states of protein L and protein G. Protein Sci 2002; 11: 2351-2361.
    • (2002) Protein Sci , vol.11 , pp. 2351-2361
    • Karanicolas, J.1    Brooks, C.L.2
  • 9
    • 0347914553 scopus 로고    scopus 로고
    • Insights into conformation and dynamics of protein. GB1 during folding and unfolding by NMR
    • Ding K, Louis JMN, Gronenborn AM. Insights into conformation and dynamics of protein. GB1 during folding and unfolding by NMR. J Mol Biol 2004;335:1299-1307.
    • (2004) J Mol Biol , vol.335 , pp. 1299-1307
    • Ding, K.1    Louis, J.M.N.2    Gronenborn, A.M.3
  • 11
    • 67949103448 scopus 로고    scopus 로고
    • Characterization of salt bridges to lysines in the protein G B1 domain
    • Tomlinson JH, Ullah S, Hansen PE, Williamson MP. Characterization of salt bridges to lysines in the protein G B1 domain. J Am Chem Soc 2009; 131:4674-4684.
    • (2009) J Am Chem Soc , vol.131 , pp. 4674-4684
    • Tomlinson, J.H.1    Ullah, S.2    Hansen, P.E.3    Williamson, M.P.4
  • 12
    • 25144515100 scopus 로고    scopus 로고
    • Improvement of duty-cycle heating compensation in NMR spin relaxation experiments
    • Yip GNB, Zuiderweg ERP. Improvement of duty-cycle heating compensation in NMR spin relaxation experiments. J Magn Reson 2005;176:171-178.
    • (2005) J Magn Reson , vol.176 , pp. 171-178
    • Yip, G.N.B.1    Zuiderweg, E.R.P.2
  • 13
    • 0033577288 scopus 로고    scopus 로고
    • A relaxation-compensated Carr-Purcell-Meiboom-Gill sequence for characterizing chemical exchange by NMR spectroscopy
    • Loria JP, Rance M, Palmer AG. A relaxation-compensated Carr-Purcell-Meiboom-Gill sequence for characterizing chemical exchange by NMR spectroscopy. J Am Chem Soc 1999;121:2331-2332.
    • (1999) J Am Chem Soc , vol.121 , pp. 2331-2332
    • Loria, J.P.1    Rance, M.2    Palmer, A.G.3
  • 15
    • 0028941877 scopus 로고
    • Backbone dynamics of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme
    • Mandel AM, Akke M, Palmer AG. Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme. J Mol Biol 1995;246:144-163.
    • (1995) J Mol Biol , vol.246 , pp. 144-163
    • Mandel, A.M.1    Akke, M.2    Palmer, A.G.3
  • 16
    • 0034048847 scopus 로고    scopus 로고
    • Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data
    • Dosset P, Hus JC, Blackledge M, Marion D. Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data. J Biomol NMR 2000;16:23-28.
    • (2000) J Biomol NMR , vol.16 , pp. 23-28
    • Dosset, P.1    Hus, J.C.2    Blackledge, M.3    Marion, D.4
  • 17
    • 0010957050 scopus 로고
    • Reaction rates by nuclear magnetic resonance
    • McConnell HM. Reaction rates by nuclear magnetic resonance. J Chem Phys 1958;28:430-431.
    • (1958) J Chem Phys , vol.28 , pp. 430-431
    • McConnell, H.M.1
  • 20
    • 36849127400 scopus 로고
    • Nuclear magnetic resonance study of the protolysis of trimethyiammonium ion in aqueous solution - Order of the reaction with respect to solvent
    • Luz Z, Meiboom S. Nuclear magnetic resonance study of the protolysis of trimethyiammonium ion in aqueous solution - order of the reaction with respect to solvent. J Chem Phys 1963;39:366-370.
    • (1963) J Chem Phys , vol.39 , pp. 366-370
    • Luz, Z.1    Meiboom, S.2
  • 21
    • 4644273901 scopus 로고    scopus 로고
    • Measurement of intermediate exchange phenomena
    • Kempf JG, Loria JP. Measurement of intermediate exchange phenomena. Methods Mol Biol 2004;278:185-231.
    • (2004) Methods Mol Biol , vol.278 , pp. 185-231
    • Kempf, J.G.1    Loria, J.P.2
  • 22
    • 0037114648 scopus 로고    scopus 로고
    • 13C chemical shifts in peptides using density functional theory
    • 13C chemical shifts in peptides using density functional theory. Biopolymers 2002;65:408-423.
    • (2002) Biopolymers , vol.65 , pp. 408-423
    • Xu, X.P.1
  • 23
    • 0141502348 scopus 로고    scopus 로고
    • Characterization of the overall and local dynamics of a protein with intermediate rotational anisotropy: Differentiating between conformational exchange and anisotropic diffusion in the B3 domain of protein G
    • Hall JB, Fushman D. Characterization of the overall and local dynamics of a protein with intermediate rotational anisotropy: differentiating between conformational exchange and anisotropic diffusion in the B3 domain of protein G. J Biomol NMR 2003;27:261-275.
    • (2003) J Biomol NMR , vol.27 , pp. 261-275
    • Hall, J.B.1    Fushman, D.2
  • 24
    • 0028354429 scopus 로고
    • Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR
    • Gallagher T, Alexander P, Bryan P, Gilliland GL. Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR. Biochemistry 1994;33:4721-4729.
    • (1994) Biochemistry , vol.33 , pp. 4721-4729
    • Gallagher, T.1    Alexander, P.2    Bryan, P.3    Gilliland, G.L.4
  • 25
    • 33645834303 scopus 로고    scopus 로고
    • New tools provide new insights in NMR studies of protein dynamics
    • Mittermaier A, Kay LE. New tools provide new insights in NMR studies of protein dynamics. Science 2006;312:224-228.
    • (2006) Science , vol.312 , pp. 224-228
    • Mittermaier, A.1    Kay, L.E.2
  • 26
    • 35948933151 scopus 로고    scopus 로고
    • Tailoring relaxation dispersion experiments for fast-associating protein complexes
    • Sugase K, Lansing JC, Dyson HJ, Wright PE. Tailoring relaxation dispersion experiments for fast-associating protein complexes. J Am Chem Soc 2007;129:13406-13407.
    • (2007) J Am Chem Soc , vol.129 , pp. 13406-13407
    • Sugase, K.1    Lansing, J.C.2    Dyson, H.J.3    Wright, P.E.4
  • 27
    • 40549133186 scopus 로고    scopus 로고
    • Characterization of enzyme motions by solution NMR relaxation dispersion
    • Loria JP, Berlow RB, Watt ED. Characterization of enzyme motions by solution NMR relaxation dispersion. Ace Chem Res 2008;41: 214-221.
    • (2008) Ace Chem Res , vol.41 , pp. 214-221
    • Loria, J.P.1    Berlow, R.B.2    Watt, E.D.3
  • 29
    • 0030610243 scopus 로고    scopus 로고
    • Measurements from nuclear magnetic resonance for the B1 and B2 immunoglobulin G-binding domains of protein G: Comparison with calculated values for nuclear magnetic resonance and X-ray structures
    • a measurements from nuclear magnetic resonance for the B1 and B2 immunoglobulin G-binding domains of protein G: comparison with calculated values for nuclear magnetic resonance and X-ray structures. Biochemistry 1997;36:3580-3589.
    • (1997) Biochemistry , vol.36 , pp. 3580-3589
    • Khare, D.1    Alexander, P.2    Antosiewicz, J.3    Bryan, P.4    Orban, J.5
  • 31
    • 0036892410 scopus 로고    scopus 로고
    • Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2
    • Nauli. S, Kuhlman B, Le Trong I, Stenkamp RE, Teller D, Baker D. Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2. Prot Sci 2002;11:2924-2931.
    • (2002) Prot Sci , vol.11 , pp. 2924-2931
    • Nauli, S.1    Kuhlman, B.2    Le Trong, I.3    Stenkamp, R.E.4    Teller, D.5    Baker, D.6
  • 32
    • 34748819310 scopus 로고    scopus 로고
    • Optimization of the Gβ1 domain by computational design and by in vitro evolution: Structural and energetic basis of stabilization
    • Wunderlich M, Max KEA, Roske Y, Mueller U, Heinemann U, Schmid FX. Optimization of the Gβ1 domain by computational design and by in vitro evolution: structural and energetic basis of stabilization. J Mol Biol 2007;373:775-784.
    • (2007) J Mol Biol , vol.373 , pp. 775-784
    • Wunderlich, M.1    Max, K.E.A.2    Roske, Y.3    Mueller, U.4    Heinemann, U.5    Schmid, F.X.6
  • 33
    • 0033867241 scopus 로고    scopus 로고
    • Structure of a protein G helix variant suggests the importance of helix propensity and helix dipole interactions in protein design
    • Strop P, Marinescu AM, Mayo SL. Structure of a protein G helix variant suggests the importance of helix propensity and helix dipole interactions in protein design. Protein Sci 2000;9:1391-1394.
    • (2000) Protein Sci , vol.9 , pp. 1391-1394
    • Strop, P.1    Marinescu, A.M.2    Mayo, S.L.3
  • 34
    • 0000635348 scopus 로고
    • The relationship between amide proton chemical shifts and secondary structure in proteins
    • Asakura T, Taoka K, Demura M, Williamson MP. The relationship between amide proton chemical shifts and secondary structure in proteins. J Biomol NMR 1995;6:227-236.
    • (1995) J Biomol NMR , vol.6 , pp. 227-236
    • Asakura, T.1    Taoka, K.2    Demura, M.3    Williamson, M.P.4
  • 35
    • 50149085281 scopus 로고    scopus 로고
    • Structures of invisible, excited protein states by relaxation dispersion NMR spectroscopy
    • Vallurupalli P, Hansen DF, Kay LE. Structures of invisible, excited protein states by relaxation dispersion NMR spectroscopy. Proc Natl Acad Sci USA 2008;105:11766-11771.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 11766-11771
    • Vallurupalli, P.1    Hansen, D.F.2    Kay, L.E.3
  • 36
    • 0033582944 scopus 로고    scopus 로고
    • Side-chain structures in the first turn of the α-helix
    • Penel S, Hughes E, Doig AJ. Side-chain structures in the first turn of the α-helix. J Mol Biol 1999;287:127-143.
    • (1999) J Mol Biol , vol.287 , pp. 127-143
    • Penel, S.1    Hughes, E.2    Doig, A.J.3
  • 37
    • 4544369672 scopus 로고    scopus 로고
    • Improved prediction for N-termini of a-helices using empirical information
    • Wilson CL, Boardman PE, Doig AJ, Hubbard SJ. Improved prediction for N-termini of a-helices using empirical information. Proteins 2004;57:322-330.
    • (2004) Proteins , vol.57 , pp. 322-330
    • Wilson, C.L.1    Boardman, P.E.2    Doig, A.J.3    Hubbard, S.J.4
  • 39
    • 0029020484 scopus 로고
    • N- And C-capping preferences for all 20 amino acids in α-helical peptides
    • Doig AJ, Baldwin RL. N- and C-capping preferences for all 20 amino acids in α-helical peptides. Protein Sci 1995;4:1325-1336.
    • (1995) Protein Sci , vol.4 , pp. 1325-1336
    • Doig, A.J.1    Baldwin, R.L.2
  • 40
    • 0028882032 scopus 로고
    • Measuring the strength of side-chain hydrogen bonds in peptide helices: The Gln.Asp-(i,i+4) interaction
    • Huyghues-Despointes BMP, Klingler TM, Baldwin RL. Measuring the strength of side-chain hydrogen bonds in peptide helices: the Gln.Asp-(i,i+4) interaction. Biochemistry 1995;34:13267-13271.
    • (1995) Biochemistry , vol.34 , pp. 13267-13271
    • Huyghues-Despointes, B.M.P.1    Klingler, T.M.2    Baldwin, R.L.3
  • 41
    • 0028080176 scopus 로고
    • The 3rd IgG-binding domain from streptococcal protein G: An analysis by X-ray crystallography of the structure alone and in a complex with Fab
    • Derrick JP, Wigiey DB. The 3rd IgG-binding domain from streptococcal protein G: an analysis by X-ray crystallography of the structure alone and in a complex with Fab. J Mol Biol 1994;243:906-918.
    • (1994) J Mol Biol , vol.243 , pp. 906-918
    • Derrick, J.P.1    Wigiey, D.B.2
  • 42
    • 0022845301 scopus 로고
    • A physicochemical study of Protein G, a molecule with unique immunoglobulin G-binding properties
    • Åkerstrom B, Björck L. A physicochemical study of Protein G, a molecule with unique immunoglobulin G-binding properties. J Biol Chem 1986;261:10240-10247.
    • (1986) J Biol Chem , vol.261 , pp. 10240-10247
    • Åkerstrom, B.1    Björck, L.2
  • 43
    • 0034682788 scopus 로고    scopus 로고
    • Inhibition of toxicity in the β-amyloid peptide fragment β-(25-35) using N-methylated derivatives A general strategy to prevent amyloid formation
    • Hughes E, Burke RM, Doig AJ. Inhibition of toxicity in the β-amyloid peptide fragment β-(25-35) using N-methylated derivatives A general strategy to prevent amyloid formation. J Biol Chem 2000;275:25109-25115.
    • (2000) J Biol Chem , vol.275 , pp. 25109-25115
    • Hughes, E.1    Burke, R.M.2    Doig, A.J.3


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