Modulating native-like residual structure in the fully denatured state of photoactive yellow protein affects its refolding

Journal of Biological Chemistry

Volumn 285, Issue 17, 2010, Pages 12579-12586

  Lee, Byoung Chul ^a,b   Kumauchi, Masato ^b   Hoff, Wouter D ^b  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b OKLAHOMA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONAL SEARCH; DENATURED STATE; EXPERIMENTAL CONTROL; HEAT CAPACITY CHANGE; HYDROPHOBIC COLLAPSE; HYDROPHOBIC SURFACES; INDUCED EXPOSURE; KEY ELEMENTS; NATIVE STATE; NOVEL CRITERION; P-COUMARIC ACID; PHOTOACTIVE YELLOW PROTEINS; PHOTOCYCLES; REFOLDING; RESIDUAL STRUCTURE; SURFACE AREA; TOTAL SURFACE AREA;

CHROMOPHORES; DENATURATION; ELECTRON TRANSITIONS; ISOMERIZATION; ISOMERS; PHOTOEXCITATION; PROTEIN FOLDING; SURFACE CHEMISTRY;

HYDROPHOBICITY;

PARA COUMARIC ACID; PHOTOACTIVE YELLOW PROTEIN;

ARTICLE; CHROMATOPHORE; CONTROLLED STUDY; HEAT TREATMENT; HYDROPHOBICITY; ISOMERIZATION; PHOTOCHEMISTRY; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN INTERACTION; PROTEIN STRUCTURE; SURFACE PROPERTY;

BACTERIAL PROTEINS; COUMARIC ACIDS; HALORHODOSPIRA HALOPHILA; HYDROPHOBICITY; ISOMERISM; PHOTORECEPTORS, MICROBIAL; PROTEIN DENATURATION; PROTEIN FOLDING;

EID: 77951225605     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.065821     Document Type: Article

References (34)

1. Mok, K. H., Kuhn, L. T., Goez, M., Day, I. J., Lin, J. C., Andersen, N. H., and Hore, P. J. (2007) Nature 447, 106-109
2. Robic, S., Guzman-Casado, M., Sanchez-Ruiz, J. M., and Marqusee, S. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 11345-11349
3. Klein-Seetharaman, J., Oikawa, M., Grimshaw, S. B., Wirmer, J., Duchardt, E., Ueda, T., Imoto, T., Smith, L. J., Dobson, C. M., and Schwalbe, H. (2002) Science 295, 1719-1722
4. Shortle, D., and Ackerman, M. S. (2001) Science 293, 487-489
5. Garcia, P., Serrano, L., Durand, D., Rico, M., and Bruix, M. (2001) Protein Sci. 10, 1100-1112
6. Neri, D., Billeter, M., Wider, G., and Wüthrich, K. (1992) Science 257, 1559-1563
7. Shortle, D. (1996) FASEB J. 10, 27-34
8. van Gunsteren, W. F., Bürgi, R., Peter, C., and Daura, X. (2001) Angew. Chem. Int. Ed. Engl. 40, 351-355
9. Fitzkee, N. C., and Rose, G. D. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 12497-12502
10. Weinkam, P., Pletneva, E. V., Gray, H. B., Winkler, J. R., and Wolynes, P. G. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 1796-1801
11. McCarney, E. R., Kohn, J. E., and Plaxco, K. W. (2005) Crit. Rev. Biochem. Mol. Biol. 40, 181-189
12. Meyer, T. E. (1985) Biochim. Biophys. Acta 806, 175-183
13. Meyer, T. E., Yakali, E., Cusanovich, M. A., and Tollin, G. (1987) Biochemistry 26, 418-423
14. Sprenger, W. W., Hoff, W. D., Armitage, J. P., and Hellingwerf, K. J. (1993) J. Bacteriol. 175, 3096-3104
15. Kort, R., Vonk, H., Xu, X., Hoff, W. D., Crielaard, W., and Hellingwerf, K. J. (1996) FEBS Lett. 382, 73-78
16. Hoff, W. D., Düx, P., Hård, K., Devreese, B., Nugteren-Roodzant, I. M., Crielaard, W., Boelens, R., Kaptein, R., van Beeumen, J., and Hellingwerf, K. J. (1994) Biochemistry 33, 13959-13962
17. Van Brederode, M. E., Hoff, W. D., Van Stokkum, I. H., Groot, M. L., and Hellingwerf, K. J. (1996) Biophys. J. 71, 365-380
18. Lee, B. C., Pandit, A., Croonquist, P. A., and Hoff, W. D. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 9062-9067
19. Ohishi, S., Shimizu, N., Mihara, K., Imamoto, Y., and Kataoka, M. (2001) Biochemistry 40, 2854-2859
20. Bernard, C., Houben, K., Derix, N. M., Marks, D., van der Horst, M. A., Hellingwerf, K. J., Boelens, R., Kaptein, R., and van Nuland, N. A. (2005) Structure 13, 953-962
21. Hoff, W. D., Xie, A., Van Stokkum, I. H., Tang, X. J., Gural, J., Kroon, A. R., and Hellingwerf, K. J. (1999) Biochemistry 38, 1009-1017
22. Zhao, J. M., Lee, H., Nome, R. A., Majid, S., Scherer, N. F., and Hoff, W. D. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 11561-11666
23. Hoff, W. D., van Stokkum, I. H., Gural, J., and Hellingwerf, K. J. (1997) Biochim. Biophys. Acta 1322, 151-162
24. Craven, C. J., Derix, N. M., Hendriks, J., Boelens, R., Hellingwerf, K. J., and Kaptein, R. (2000) Biochemistry 39, 14392-14399
25. Fink, A. L., Calciano, L. J., Goto, Y., Nishimura, M., and Swedberg, S. A. (1993) Protein Sci. 2, 1155-1160
26. Myers, J. K., Pace, C. N., and Scholtz, J. M. (1995) Protein Sci. 4, 2138-2148
27. Murphy, K. P., and Freire, E. (1992) Adv. Protein Chem. 43, 313-361
28. Unno, M., Kumauchi, M., Sasaki, J., Tokunaga, F., and Yamauchi, S. (2000) J. Am. Chem. Soc. 122, 4233-4234
29. Xie, A., Hoff, W. D., Kroon, A. R., and Hellingwerf, K. J. (1996) Biochemistry 35, 14671-14678
30. Khan, J. S., Imamoto, Y., Kataoka, M., Tokunaga, F., and Terazima, M. (2006) J. Am. Chem. Soc. 128, 1002-1008
31. Privalov, P. L. (1990) Crit. Rev. Biochem. Mol. Biol. 25, 281-305
32. Liu, Y., and Sturtevant, J. M. (1996) Biochemistry 35, 3059-3062
33. Levinthal, C. (1968) J. Chim. Phys. 65, 44-45
34. Dill, K. A., Bromberg, S., Yue, K., Fiebig, K. M., Yee, D. P., Thomas, P. D., and Chan, H. S. (1995) Protein Sci. 4, 561-602