-
1
-
-
0042065285
-
Touch and go: Tying tonb to transport
-
Postle K, Kadner RJ. Touch and go: tying TonB to transport. Mol Microbiol 2003;49:869-882.
-
(2003)
Mol Microbiol
, vol.49
, pp. 869-882
-
-
Postle, K.1
Kadner, R.J.2
-
2
-
-
23044489264
-
TonB-dependent outer membrane transport: Going for baroque?
-
Wiener MC. TonB-dependent outer membrane transport: going for Baroque? Curr Opin Struct Biol 2005;15:394-400.
-
(2005)
Curr Opin Struct Biol
, vol.15
, pp. 394-400
-
-
Wiener, M.C.1
-
3
-
-
0242670022
-
Substrate-induced transmembrane signaling in the cobalamin transporter BtuB
-
DOI 10.1038/nsb914
-
Chimento DP, Mohanty AK, Kadner RJ, Wiener MC. Substrateinduced transmembrane signaling in the cobalamin transporter BtuB. Nat Struct Biol 2003;10:394-401. (Pubitemid 36523275)
-
(2003)
Nature Structural Biology
, vol.10
, Issue.5
, pp. 394-401
-
-
Chimento, D.P.1
Mohanty, A.K.2
Kadner, R.J.3
Wiener, M.C.4
-
4
-
-
33744780736
-
Outer membrane active transport: Structure of the BtuB:TonB complex
-
DOI 10.1126/science.1127694
-
Shultis DD, Purdy MD, Banchs CN, Wiener MC. Outer membrane active transport: structure of the BtuB:TonB complex. Science 2006; 312:1396-1399. (Pubitemid 43839554)
-
(2006)
Science
, vol.312
, Issue.5778
, pp. 1396-1399
-
-
Shultis, D.D.1
Purdy, M.D.2
Banchs, C.N.3
Wiener, M.C.4
-
5
-
-
33750965918
-
In meso structure of the cobalamin transporter, BtuB, at 195 A resolution
-
Cherezov V, Yamashita E, Liu W, Zhalnina M, Cramer WA, Caffrev M. In meso structure of the cobalamin transporter, BtuB, at 195 A resolution. J Mol Biol 2006;364:716-734.
-
(2006)
J Mol Biol
, vol.364
, pp. 716-734
-
-
Cherezov, V.1
Yamashita, E.2
Liu, W.3
Zhalnina, M.4
Cramer, W.A.5
Caffrev, M.6
-
6
-
-
0037452539
-
Substrate-induced conformational changes of the perplasmic N-terminus of an outer-membrane transporter by site-directed spin labeling
-
Fanucci GE, Coggshall KA, Cadieux N, Kim M, Kadner RJ, Cafiso DS. Substrate-induced conformational changes of the perplasmic N-terminus of an outer-membrane transporter by site-directed spin labeling. Biochemistry 2003;42:1391-1400.
-
(2003)
Biochemistry
, vol.42
, pp. 1391-1400
-
-
Fanucci, G.E.1
Coggshall, K.A.2
Cadieux, N.3
Kim, M.4
Kadner, R.J.5
Cafiso, D.S.6
-
7
-
-
34447339675
-
Mechanics of force propagation in TonB-dependent outer membrane transport
-
Gumbart JC, Wiener MC, Tajkhorshid E. Mechanics of force propagation in TonB-dependent outer membrane transport. Biophys ) 2007;93:496-504.
-
(2007)
Biophys
, vol.93
, pp. 496-504
-
-
Gumbart, J.C.1
Wiener, M.C.2
Tajkhorshid, E.3
-
8
-
-
33745684868
-
Crystallization and preliminary X-ray crystallography analysis of the Escherichia coli outer membrane cobalamin transporter BtuB in complex with the carboxy-terminal domain of TonB
-
Shultis DD, Purdy MD, Banchs CN, Wiener MC. Crystallization and preliminary X-ray crystallography analysis of the Escherichia coli outer membrane cobalamin transporter BtuB in complex with the carboxy-terminal domain of TonB. Acta Crystallograf Sect F 2006;62:638-641.
-
(2006)
Acta Crystallograf Sect F
, vol.62
, pp. 638-641
-
-
Shultis, D.D.1
Purdy, M.D.2
Banchs, C.N.3
Wiener, M.C.4
-
9
-
-
66049128793
-
Crystallizing membrane proteins for structure determination: Use of lipidic mesophases
-
Caffrev M. Crystallizing membrane proteins for structure determination: use of lipidic mesophases. Annu Rev Biophys 2009;38:29-51.
-
(2009)
Annu Rev Biophys
, vol.38
, pp. 29-51
-
-
Caffrev, M.1
-
10
-
-
0037391107
-
Membrane protein crystallization
-
Caffrey M. Membrane protein crystallization. J Struct Biol 2003; 142:108-132.
-
(2003)
J Struct Biol
, vol.142
, pp. 108-132
-
-
Caffrey, M.1
-
11
-
-
67649392795
-
Crystallizing membrane proteins using lipidie mesophases
-
Caffrey M, Cherezov V. Crystallizing membrane proteins using lipidie mesophases. Nat Protoc 2009;4:706-731.
-
(2009)
Nat Protoc
, vol.4
, pp. 706-731
-
-
Caffrey, M.1
Cherezov, V.2
-
12
-
-
40549083360
-
In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin
-
Cherezov V, Liu W, Jeremy D, Luan B, Aksimentiev A, Katritch V, Caffrey M. In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin. Proteins: Struct Func Bioinformatics 2008; 71:24-34.
-
(2008)
Proteins: Struct Func Bioinformatics
, vol.71
, pp. 24-34
-
-
Cherezov, V.1
Liu, W.2
Jeremy, D.3
Luan, B.4
Aksimentiev, A.5
Katritch, V.6
Caffrey, M.7
-
13
-
-
36048936454
-
Structural refinement of the OpcA adhesin using molecular dynamics
-
Luan B, Caffrey M, Aksimentiev A. Structural refinement of the OpcA adhesin using molecular dynamics. Biophys J 2007:93:3058-3069.
-
(2007)
Biophys J
, vol.93
, pp. 3058-3069
-
-
Luan, B.1
Caffrey, M.2
Aksimentiev, A.3
-
14
-
-
0025121127
-
Interdependence of calcium and cobalamin binding by wild-type and mutant BtuB protein in the outer membrane of Escherichia coli
-
Bradbeer C, Gudmundsdottir A. Interdependence of calcium and cobalamin binding by wide-type and mutant BtuB protein in the outer membrane of Escherichia coli. J Bacterid 1990;172:4919-4926. (Pubitemid 20281937)
-
(1990)
Journal of Bacteriology
, vol.172
, Issue.9
, pp. 4919-4926
-
-
Bradbeer, C.1
Gudmundsdottir, A.2
-
16
-
-
36849022483
-
Observations on the calcium dependence and reversibility of cabalamin transport across the outer membrane of Escherichia coli
-
Cadieux N, Barekzi N, Bradbeer C. Observations on the calcium dependence and reversibility of cabalamin transport across the outer membrane of Escherichia coli. I Biol Chem 2007;282:34921-34928.
-
(2007)
I Biol Chem
, vol.282
, pp. 34921-34928
-
-
Cadieux, N.1
Barekzi, N.2
Bradbeer, C.3
-
18
-
-
0041384402
-
The Escherichia coli outer membrane cobalamin transporter BtuB: Structural analysis of calcium and substrate binding, and identification of orthologous transporters by sequence/structure conservation
-
Chimento DP, Kadner RJ, Wiener MC. The Escherichia coli outer membrane cobalamin transporter BtuB: structural analysis of calcium and substrate binding, and identification of orthologous transporters by sequence/structure conservation. J Mol Biol 2003; 332:999-1014.
-
(2003)
J Mol Biol
, vol.332
, pp. 999-1014
-
-
Chimento, D.P.1
Kadner, R.J.2
Wiener, M.C.3
-
19
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel RD, Kale L, Schulten K. Scalable molecular dynamics with NAMD. J Comput Chem 2005;26:1781-1802.
-
(2005)
J Comput Chem
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
20
-
-
0041784950
-
All-atom empirical, potential, for molecular modeling and dynamics studies of proteins
-
MacKerell AD, Jr, Bashford D, Bellott M, Dunbrack RL, Jr, Evanseck J, Field MJ, Fischer S, Gao J, Guo H, Ha S, Joseph D, Kuchnir L, Kuczera K, Lau FTK, Mattos C, Michnick S, Ngo T, Nguyen DT, Prodhom B, Reiher IWE, Roux. B, Schlenkrich M, Smith J, Stole R, Straub J, Watanabe M, Wiorkiewicz-Kuczera J, Yin D, Karplus M. All-atom empirical, potential, for molecular modeling and dynamics studies of proteins. J Phys Chem B 1998;102:3586-3616.
-
(1998)
J Phys Chem B
, vol.102
, pp. 3586-3616
-
-
MacKerell Jr., A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack Jr., R.L.4
Evanseck, J.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, I.W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.23
Stole, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
21
-
-
0035449971
-
Optimized particle-mesh Ewald/ multiple-time step integration for molecular dynamics simulations
-
Batcho PF, Case DA, Schlick T. Optimized particle-mesh Ewald/ multiple-time step integration for molecular dynamics simulations. J Chem Phys 2001;115:4003-4018.
-
(2001)
J Chem Phys
, vol.115
, pp. 4003-4018
-
-
Batcho, P.F.1
Case, D.A.2
Schlick, T.3
-
22
-
-
84855273710
-
-
The Howard Hughes medical institute and department of molecular biophysics and biochemistry, New Haven; Yale University
-
Brünger AT. X-PLOR, version 31: A system for X-ray crystallography and NMR. The Howard Hughes medical institute and department of molecular biophysics and biochemistry, New Haven; Yale University; 1992.
-
(1992)
X-PLOR, Version 31: A System for X-ray Crystallography and NMR
-
-
Brünger, A.T.1
-
23
-
-
36449003554
-
Constant pressure molecular dynamics algorithms
-
Martyna GJ, Tobias DJ, Klein ML. Constant pressure molecular dynamics algorithms. J Chem Phys 1994;101:4177-4189.
-
(1994)
J Chem Phys
, vol.101
, pp. 4177-4189
-
-
Martyna, G.J.1
Tobias, D.J.2
Klein, M.L.3
-
25
-
-
0030059225
-
Ligand binding: Molecular mechanics calculation of the streptavidin-biotin rupture force
-
Grubmüller H, Heymann B, Tavan P. Ligand binding and molecular mechanics calculation of the streptavidin-biotin rupture force. Science 1996;271:997-999. (Pubitemid 26066398)
-
(1996)
Science
, vol.271
, Issue.5251
, pp. 997-999
-
-
Grubmuller, H.1
Heymann, B.2
Tavan, P.3
-
26
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML. Comparison of simple potential functions for simulating liquid water. J Chem Phys 1983;79:926-935.
-
(1983)
J Chem Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
27
-
-
0026065967
-
Average structural and motional properties of a diunsaturated acyl chain in a lipid bilayer: Effects of two cis-unsaturated double bonds
-
Baenziger J, Jarrell H, Hill R, Smith I. Average structural and motional properties of a diunsaturated acyl chain in a lipid bilayer: effects of two cis-unsaturated double bonds. Biochemistry 1991; 30:894-903.
-
(1991)
Biochemistry
, vol.30
, pp. 894-903
-
-
Baenziger, J.1
Jarrell, H.2
Hill, R.3
Smith, I.4
-
28
-
-
0027177537
-
Langevin dynamics studies of unsaturated phospholipids in a membrane environment
-
Pearce L, Harvey S. Langevin dynamics studies of unsaturated phospholipids in a membrane environment. Biophys J 1993;65:1084-1092. (Pubitemid 23263924)
-
(1993)
Biophysical Journal
, vol.65
, Issue.3
, pp. 1084-1092
-
-
Pearce, L.L.1
Harvey, S.C.2
-
32
-
-
38149112637
-
Outer membrane proteins: Comparing X-ray and NMR structures by MD simulations in lipid bilayers
-
Cox K, Bond PJ, Grottesi A, Baaden M, Sansom MSP. Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers. Eur Biophys J 2007;37:131-141
-
(2007)
Eur Biophys J
, vol.37
, pp. 131-141
-
-
Cox, K.1
Bond, P.J.2
Grottesi, A.3
Baaden, M.4
Sansom, M.S.P.5
|