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The homology model was built with Prime 1.6 (, version 1.6; Schrodinger, LLC: New York) using an in-house X-ray structure of PI3K-g in complex with a related pyrazolopyrimidine (3IBE.pdb) as the template. Docking studies were performed using Glide, version 4.5, initially, and version 5.5 (Glide, version 5.5; Schrodinger, LLC: New York, 2009) more recently. Docking studies were either performed without constraints or with a hydrogen bonding constraint to the backbone-NH of Val851. Figure 2 was made using PyMOL (The PyMOL Molecular Graphics System; DeLano Scientific LLC: Palo Alto, CA, 2008)
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The homology model was built with Prime 1.6 (Prime, version 1.6; Schrodinger, LLC: New York, 2007) using an in-house X-ray structure of PI3K-g in complex with a related pyrazolopyrimidine (3IBE.pdb) as the template. Docking studies were performed using Glide, version 4.5, initially, and version 5.5 (Glide, version 5.5; Schrodinger, LLC: New York, 2009) more recently. Docking studies were either performed without constraints or with a hydrogen bonding constraint to the backbone-NH of Val851. Figure 2 was made using PyMOL (DeLano, W. L. The PyMOL Molecular Graphics System; DeLano Scientific LLC: Palo Alto, CA, 2008).
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(2007)
Prime
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Delano, W.L.1
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