The persistence of bacterial and methanogenic archaeal communities residing in the rumen of young lambs

FEMS Microbiology Ecology

Volumn 72, Issue 2, 2010, Pages 272-278

  Yáñez Ruiz, David R ^a   MacÍas, Beatriz ^a   Pinloche, Eric ^a   Newbold, Charles J ^a  

^a ABERYSTWYTH UNIVERSITY   (United Kingdom)

Author keywords

Methanogenic archaea; QPCR; Rumen bacteria; T RFLP; Weaning

Indexed keywords

ARCHAEAL DNA; BACTERIAL DNA;

ADULT; METHANOGENIC BACTERIUM; MICROBIAL COMMUNITY; POLYMERASE CHAIN REACTION; SHEEP; WEANING; YOUNG POPULATION;

ANIMAL; ARCHAEBACTERIUM; ARTICLE; BACTERIUM; DIET; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RUMINANT STOMACH; SHEEP; TIME;

ANIMALS; ARCHAEA; BACTERIA; DIET; DNA, ARCHAEAL; DNA, BACTERIAL; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RUMEN; SHEEP, DOMESTIC; TIME FACTORS;

ANIMALIA; ARCHAEA; BACTERIA (MICROORGANISMS); OVIS ARIES;

EID: 77950636455     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2010.00852.x     Document Type: Article

References (32)

1. Bryant MP, Small N, Bouma C Robinson I (1958) Studies on the composition of the composition of the ruminal flora and fauna in young calves. J Dairy Sci 41 : 1747 1767.
2. Cebra JJ (1999) Influences of microbiota on intestinal immune system development. Am J Clin Nutr 69 : 1046S 1051S.
3. Denman SE McSweeney CS (2005) Quantitative (real-time) PCR. Methods in Gut Microbial Ecology for Ruminants (Makkar HPS McSweeney CS, eds), pp. 105 118. Springer
4. Denman SE McSweeney CS (2006) Development of a real-time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen. FEMS Microbiol Ecol 58 : 572 582.
5. Denman SE, Tomkins NW McSweeney CS (2007) Quantitation and diversity analysis of ruminal methanogenic populations in response to the antimethanogenic compound bromochloromethane. FEMS Microbiol Ecol 62 : 313 322.
6. Distel RA, Villalba JJ Laborde HE (1994) Effects of early exprience on voluntary intake of low-quality roughage by sheep. J Anim Sci 72 : 1191 1195.
7. Eadie JM, Hobson PN Mann SO (1959) A relationship between some bacteria, protozoa and diet in early weaned calves. Nature 183 : 624 625.
8. Edwards JE, McEwan NR, Travis AJ Wallace RJ (2004) 16S rDNA library based analysis of ruminal bacterial diversity. Antonie van Leeuwenhoek 86 : 263 281.
9. Fonty G, Jouany JP, Senaud J, Gouet Ph Grain J (1984) The evolution of microflora, microfauna and digestion in the rumen of lambs from birth to 4 months. Can J Anim Sci 64 : 165 166.
10. Fonty G, Jouany JP, Gouet Ph Senaud J (1986) Influence du régime alimentaire et de la méthode d́levage sur l'implantation des bactéries cellulolytiques et des protozoaires ciliés dans le rumen de l'agneau. Reprod Nutr Dev 26 : 283 284.
11. Fonty G, Gouet P, Jouany JP Senaud J (1987) Establishment of the microflora and anaerobic fungi in the rumen of lambs. J Gen Microbiol 133 : 1835 1843.
12. Hongoh Y, Deevong P, Inoue T, Moriya S, Trakulnaleamsai S, Ohkuma M, Vongkaluang C, Noparatnaraporn N Kudo T (2005) Intra- and interspecific comparisons of bacterial diversity and community structure support coevolution of gut microbiota and termite host. Appl Environ Microb 71 : 6590 6599.
13. Khachatryan ZA, Ktsoyan ZA, Manukyan GP, Kelly D, Ghazaryan KA Aminov RI (2008) Predominant role of host genetics in controlling the composition of gut microbiota. PLoS ONE 3 : e3064.
14. Koike S Kobayashi Y (2001) Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens. FEMS Microbiol Lett 13 : 361 366.
15. Krause DO, Smith Ryan WJ, Mackie RI McSweeney CS (1999) Use of 16S-rRNA based techniques to investigate the ecological succession of microbial populations in the immature lamb rumen: tracking of a specific strain of inoculate Ruminococcus and interactions with other microbial populations in vivo. Microb Ecol 38 : 365 376.
16. Lovett D, Lovell S, Stack L, Callan J, Finlay M, Conolly J O'Mara FP (2003) Effect of forage/concentrate ratio and dietary coconut oil level on methane output and performance of finishing beef heifers. Livest Prod Sci 84 : 135 146.
17. Morvan B, Dore J, Rieu-Lesme F, Foucat L, Fonty G Gouet P (1994) Establishment of hydrogen-utilizing bacteria in the rumen of the newborn lamb. FEMS Microbiol Lett 117 : 249 256.
18. Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29 : 2002 2007.
19. Pounden WD Hibbs JW (1948) The influence of the ration and rumen inoculation of the establishment of certain micro-organisms in the rumen of young calves. J Dairy Sci 31 : 1041 1050.
20. Provenza FD Balph DF (1988) The development of dietary choice in livestock on rangelands and its implications for management. J Anim Sci 66 : 2356 2366.
21. Provenza FD Balph DF (1990) Applicability of five diet selection models to various foraging challenges ruminants encounter. Behavioural Mechanisms of Food Selection (Hughes RN, ed), pp. 423 459. Springer-Verlag
22. Rawls JF, Mahowald MA, Ley RE Gordon JI (2006) Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell 127 : 423 433.
23. Salway AG, Murrels TP, Milne R Ellis S (2002) UK Greenhouse Gas Inventory, 1990 to 2000 Report AEAT/R/ENV/1000. DEFRA Publications
24. Skillman LC, Evans PN, Naylor GE, Morvan B, Jarvis GN Joblin KN (2004) 16S ribosomal DNA-directed PCR primers for ruminal methanogens and identification of methanogens colonising young lambs. Anaerobe 10 : 277 285.
25. Stewart CS, Fonty G Gouet P (1988) The establishment of rumen microbial communities. Anim Feed Sci Tech 21 : 69 97.
26. Stewart CS, Flint HJ Bryant MP (1997) The rumen bacteria. The Rumen Microbial Ecosystem (Hobson PN Stewart CS, eds), pp. 10 72. Chapman and Hall
27. Thauer RK (1998) Biochemistry of methanogenesis: a tribute to Marjory Stephenson. Marjory Stephenson prize lecture. Microbiology 144 : 2377 2406.
28. Watson RT, Meira Filho LG, Sanhueza E Janetos T (1992) Sources and sinks. Climate Change 1992 (Houghton JY, Callander BA Varney SK, eds), pp. 25 46. Cambridge University Press
29. Winkler P, Ghadimi D, Schrezenmeir J Kraehenbuhl JP (2007) Molecular and cellular basis of microflora-host interactions. J Nutr 137 : 756S 772S.
30. Yáñez-Ruiz DR, Hart KJ, Martín-García AI, Ramos S Newbold CJ (2008) Diet composition at weaning affects the rumen microbial population and methane emissions by lambs. Aust J Exp Res 48 : 186 188.
31. Yu Z, Yu M Morrison M (2006) Improved serial analysis of V1 ribosomal sequence tags (SARST-V1) provides a rapid, comprehensive, sequence-based characterization of bacterial diversity and community composition. Environ Microbiol 8 : 603 611.
32. Ziolecki A Briggs CAE (1961) The microflora of the rumen of the young calf: II. Source, nature and development. J Appl Bacteriol 24 : 148 163.