Kocuria atrinae sp. nov., isolated from traditional Korean fermented seafood

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 4, 2010, Pages 914-918

  Park, Eun Jin ^a   Kim, Min Soo ^a   Roh, Seong Woon ^a   Jung, Mi Ja ^a   Bae, Jin Woo ^a  

^a Kyung Hee University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; MENAQUINONE; RNA 16S; SODIUM CHLORIDE;

ACTINOBACTERIA; AEROBIC BACTERIUM; ARTICLE; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; CONTROLLED STUDY; FERMENTED PRODUCT; GENUS; GRAM POSITIVE BACTERIUM; KOCURIA ATRINAE; KOCURIA CARNIPHILA; KOCURIA GWANGALLIENSIS; KOCURIA MARINA; KOCURIA RHIZOPHILA; KOCURIA ROSEA; KOCURIA VARIANS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPIC VARIATION; PRIORITY JOURNAL; SEA FOOD; SEQUENCE HOMOLOGY; TEMPERATURE;

ANIMALS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, RIBOSOMAL; FATTY ACIDS; FERMENTATION; GENES, RRNA; GENOTYPE; MICROCOCCACEAE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEAFOOD; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

COCCOIDEA; KOCURIA; KOCURIA CARNIPHILA; KOCURIA MARINA; KOCURIA RHIZOPHILA; KOCURIA ROSEA; KOCURIA VARIANS; POSIBACTERIA;

EID: 77950615367     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.014506-0     Document Type: Article

References (26)

1. Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
2. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
3. Gonzalez, J. M. & Saiz-Jimenez, C. (2002). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4, 770-773.
4. Hiraishi, A., Ueda, Y., Ishihara, J. & Mori, T. (1996). Comparative lipoquinone analysis of influent sewage and activated sludge by highperformance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42, 457-469. (Pubitemid 27129837)
5. Kim, S. B., Nedashkovskaya, O. I., Mikhailov, V. V., Han, S. K., Kim, K. O., Rhee, M. S. & Bae, K. S. (2004). Kocuria marina sp. nov., a novel actinobacterium isolated from marine sediment. Int J Syst Evol Microbiol 54, 1617-1620.
6. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
7. Kluge, A. G. & Farris, J. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
8. Kovacs, G., Burghardt, J., Pradella, S., Schumann, P., Stackebrandt, E. & Màrialigeti, K. (1999). Kocuria palustris sp. nov. and Kocuria rhizophila sp. nov., isolated from the rhizoplane of the narrow-leaved cattail (Typha angustifolia). Int J Syst Bacteriol 49, 167-173.
9. Li, W.-J., Zhang, Y.-Q., Schumann, P., Chen, H.-H., Hozzein, W. N., Tian, X.-P., Xu, L.-H. & Jiang, C.-L. (2006). Kocuria aegyptia sp. nov., a novel actinobacterium isolated from a saline, alkaline desert soil in Egypt. Int J Syst Evol Microbiol 56, 733-737.
10. Mayilraj, S., Kroppenstedt, R. M., Suresh, K. & Saini, H. S. (2006). Kocuria himachalensis sp. nov., an actinobacterium isolated from the Indian Himalayas. Int J Syst Evol Microbiol 56, 1971-1975.
11. Park, E. J., Roh, S. W., Kim, M. S., Jung, M. J., Shin, K. S. & Bae, J. W. (2010). Kocuria koreensis sp. nov. isolated from fermented seafood. Int J Syst Evol Microbiol 60, 140-143.
12. Rainey, F. A., Nobre, M. F., Schumann, P., Stackebrandt, E. & Da Costa, M. S. (1997). Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison. Int J Syst Bacteriol 47, 510-514.
13. Reddy, G. S. N., Prakash, J. S. S., Prabahar, V., Matsumoto, G. I., Stackebrandt, E. & Shivaji, S. (2003). Kocuria polaris sp. nov., an orange-pigmented psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int J Syst Evol Microbiol 53, 183-187.
14. Roh, S. W., Sung, Y., Nam, Y. D., Chang, H. W., Kim, K. H., Yoon, J. H., Jeon, C. O., Oh, H. M. & Bae, J. W. (2008). Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment. J Microbiol 46, 40-44.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
17. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
18. Seo, Y. B., Kim, D. E., Kim, G. D., Kim, H. W., Nam, S. W., Kim, Y. T. & Lee, J. H. (2009). Kocuria gwangalliensis sp. nov., a novel actinobacterium isolated from seawater. Int J Syst Evol Microbiol 59, 2769-2772.
19. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
20. Stackebrandt, E., Koch, C., Gvozdiak, O. & Schumann, P. (1995). Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend. Int J Syst Bacteriol 45, 682-692.
21. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
22. Tang, S. K., Wang, Y., Lou, K., Mao, P. H., Xu, L. H., Jiang, C. L., Kim, C. J. & Li, W. J. (2009). Kocuria halotolerans sp. nov., a novel actinobacterium isolated from a saline soil in China. Int J Syst Evol Microbiol 59, 1316-1320.
23. Tittsler, R. P. & Sandholzer, L. A. (1936). Use of semi-solid agar for the detection of bacterial motility. J Bacteriol 31, 575-580.
24. Tvrzová, L., Schumann, P., Sedlácek, I., Pácová, Z., Spröer, C., Verbarg, S. & Kroppenstedt, R. M. (2005). Reclassification of strain CCM 132, previously classified as Kocuria varians, as Kocuria carniphila sp. nov. Int J Syst Evol Microbiol 55, 139-142.
25. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
26. Zhou, G., Luo, X., Tang, Y., Zhang, L., Yang, Q., Qio, Y. & Fang, C. (2008). Kocuria flava sp. nov. and Kocuria turfanensis sp. nov., airborne actinobacteria isolated from Xinjiang, China. Int J Syst Evol Microbiol 58, 1304-1307.