Epigenetic regulation of peanut allergen gene Ara h 3 in developing embryos

Planta

Volumn 231, Issue 5, 2010, Pages 1049-1060

  Fu, Guohua ^a,d   Zhong, Yujuan ^a   Li, Chenlong ^a,d   Li, Yin ^a   Lin, Xiaodong ^a   Liao, Bin ^a   Tsang, Edward W T ^b   Wu, Keqiang ^c   Huang, Shangzhi ^a  

^a SUN YAT SEN UNIVERSITY   (China)

^b NATIONAL RESEARCH COUNCIL CANADA   (Canada)

^c NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^d UNIVERSITY OF WESTERN ONTARIO   (Canada)

Author keywords

Allergen; Ara h 3; Chromatin immunoprecipitation; Embryo development; Epigenetic regulation; Peanut

Indexed keywords

ALLERGEN; ARA H 3 ALLERGEN, ARACHIS HYPOGEA; BETA GLUCURONIDASE; HISTONE; PLANT ANTIGEN; VEGETABLE PROTEIN;

ACETYLATION; AMINO ACID SEQUENCE; ANTIBODY SPECIFICITY; ARTICLE; CHEMISTRY; GENE EXPRESSION REGULATION; GENETIC EPIGENESIS; GENETICS; INTRON; METABOLISM; METHYLATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PEANUT; PLANT GENE; PLANT SEED; PRENATAL DEVELOPMENT; PROMOTER REGION; PROTEIN PROCESSING;

ACETYLATION; ALLERGENS; AMINO ACID SEQUENCE; ANTIGENS, PLANT; ARACHIS HYPOGAEA; BASE SEQUENCE; EPIGENESIS, GENETIC; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GLUCURONIDASE; HISTONES; INTRONS; METHYLATION; MOLECULAR SEQUENCE DATA; ORGAN SPECIFICITY; PLANT PROTEINS; PROMOTER REGIONS, GENETIC; PROTEIN PROCESSING, POST-TRANSLATIONAL; SEEDS;

ARA; ARABIDOPSIS; ARABIDOPSIS THALIANA; ARACHIS HYPOGAEA;

EID: 77950541597     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-010-1111-3     Document Type: Article

References (51)

1. Albillos SM, Jin T, Howard A, Zhang Y, Kothary MH, Fu TJ (2008) Purification, crystallization and preliminary X-ray characterization of prunin-1, a major component of the almond (Prunus dulcis) allergen amandin. J Agric Food Chem 56: 5352-5358.
2. Annick B, Jean-Philippe B, Pierre R (2005) Molecular modelling of the major peanut allergen Ara h 1 and other homotrimeric allergens of the cupin superfamily: a structural basis for their IgE-binding cross-reactivity. Biochimie 87: 499-506.
3. Badley RA, Atkinson D, Hauser H, Oldani D, Green JP, Stubb JM (1975) The structure, physical and chemical properties of the soy bean protein glycinin. Biochim Biophys Acta 412: 214-228.
4. Bannister AJ, Zegerman P, Partridge JF, Miska EA, Thomas JO, Allshire RC, Kouzarides T (2001) Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 410: 120-124.
5. Barrera LO, Ren B (2006) The transcriptional regulatory code of eukaryotic cells-insights from genome-wide analysis of chromatin organization and transcription factor binding. Curr Opin Cell Biol 18: 291-298.
6. Bäumlein H, Nagy I, Villarroel R, Inze D, Wobus U (1992) Cis-analysis of a seed protein gene promoter: the conservative RY repeat CATGCATG within legumin box is essential for tissue-specific expression of a legumin gene. Plant J 2: 233-239.
7. Bernstein BE, Liu CL, Humphrey EL, Perlstein EO, Schreiber SL (2004) Global nucleosome occupancy in yeast. Genome Biol 5: R62.
8. Boeger H, Griesenbeck J, Strattan JS, Kornberg RD (2003) Nucleosomes unfold completely at a transcriptionally active promoter. Mol Cell 11: 1587-1598.
9. Bowler C, Benvenuto G, Laflamme P, Molino D, Probst AV, Tariq M, Paszkowski J (2004) Chromatin techniques for plant cells. Plant J 39: 776-789.
10. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
11. Burks AW (2003) Peanut allergy: a growing phenomenon. J Clin Invest 111: 950-952.
12. Burks AW, Williams LW, Connaughton C (1992) Identification and characterization of a second major peanut allergen, Arah 2, with use of the sera of patients with atopic dermatitis and positive peanut challenges. J Allergy Clin Immunol 90: 962-969.
13. Burnette WN (1981) "Western blotting": electrophoretic transfer of protein from sodium dodecyl sulfate-polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein. Anal Biochem 112: 195-203.
14. Chamberland S, Daigle N, Bernier F (1992) The legumin boxes and the part of the soybean conglycinin promoter are involved in seed gene expression in transgenic tobacco plants. Plant Mol Biol 19: 937-949.
15. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743.
16. Erkina TY, Erkine AM (2006) Displacement of histones at promoters of Saccharomyces cerevisiae heat shock genes is differentially associated with histone h3 acetylation. Mol Cell Biol 26: 7587-7600.
17. Fujiwara T, Beachy RN (1994) Tissue specific and temporal regulation of a conglycinin gene: roles of the R4 repeat and other cis-acting elements. Plant Mol Biol 24: 261-272.
18. Grierson D, Covey SN (1988) Plant molecular biology, 2nd edn. Chapman and Hall, New York, pp 23-46.
19. Holsters MD, Waele D, Depicker A, Messens E, Montagu M, Schell J (1978) Transfection and transformation of Agrobacterium tumefaciens. Mol Gen Genet 163: 181-187.
20. Jackson JP, Johnson L, Jasencakova Z, Zhang X, PerezBurgos L, Singh PB, Cheng X, Schubert I, Jenuwein T, Jacobsen SE (2004) Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma 112: 308-315.
21. Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6: 3901-3907.
22. Jin T, Guo F, Chen YW, Howard A, Zhang YZ (2009) Crystal structure of Ara h 3, a major allergen in peanut. Mol Immunol 46: 1796-1804.
23. Kang IH, Gallo M (2007) Cloning and characterization of a novel peanut allergen Ara h 3 isoform displaying potentially decreased allergenicity. Plant Sci 172: 345-353.
24. Kang IH, Srivastava P, Ozias-Akins P, Gallo M (2007) Temporal and spatial expression of the major allergens in developing and germinating peanut seed. Plant Physiol 144: 836-845.
25. Kristjuhan A, Svejstrup JQ (2004) Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo. EMBO J 23: 4243-4252.
26. Lachner M, Jenuwein T (2002) The many faces of histone lysine methylation. Curr Opin Cell Biol 14: 286-298.
27. Laux T, Jurgens G (1997) Embryogenesis: a new start in life. Plant Cell 9: 989-1000.
28. Lee CK, Shibata Y, Rao B, Strahl BD, Lieb JD (2004) Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat Genet 36: 900-905.
29. Li G, Chandrasekharan MB, Wolffe AP, Hall TC (2001) Chromatin structure and phaseolin gene regulation. Plant Mol Biol 46: 121-129.
30. Li C, Wu K, Fu G, Li Y, Zhong Y, Lin X, Zhou Y, Tian L, Huang S (2009) Regulation of oleosin expression in developing peanut (Arachis hypogaea L.) embryos through nucleosome loss and histone modifications. J Exp Bot 60: 4371-4382.
31. Liao B, Lu CB, Wang L, Li HG, Huang SZ (2004) Synthesis and degradation of peanut storage proteins during seed development and germination. Plant Physiol Mol Biol 30: 115-118.
32. Lorkovi′c ZL, Wieczorek DA, Lambermon MHL, Filipowicz W (2000) Pre-mRNA splicing in higher plants. Trends Plant Sci 5: 160-167.
33. Morton RL, Quiggin D, Higgins TJV (1995) Regulation of seed storage protein gene expression. In: Kigel J, Galili G (eds) Seed development and germination. Marcel Dekker Inc., New York, pp 103-138.
34. Mutskov V, Felsenfeld G (2004) Silencing of transgene transcription precedes methylation of promoter DNA and histone H3 lysine 9. EMBO J 23: 138-149.
35. Ng DW, Chandrasekharan MB, Hall TC (2006) Ordered histone modifications are associated with transcriptional poising and activation of the phaseolin promoter. Plant Cell 18: 119-132.
36. Pich U, Schubert I (1993) Midiprep method for isolation of DNA from plants with a high content of polyphenolics. Nucleic Acids Res 21: 3328.
37. Rabjohn P, Helm EM, Stanley JS, West CM, Sampson HA, Burks AW, Bannon GA (1999) Molecular cloning and epitope analysis of the peanut allergen Arah3. J Clin Invest 103: 535-542.
38. Ramos ML, Huntley JJ, Maleki SJ, Ozias-Akins P (2009) Identification and characterization of a hypoallergenic ortholog of Ara h 2. 01. Plant Mol Biol 69: 325-335.
39. Reinke H, Horz W (2003) Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. Mol Cell 11: 1599-1607.
40. Sampson HA (1996) Managing peanut allergy. BMJ 312: 1050-1051.
41. Strömvik MV, Sundararaman VP, Vodkin LO (1999) A novel promoter form soybean that is active in a complex developmental pattern with and without its proximal 650 base pairs. Plant Mol Biol 41: 217-231.
42. Tariq M, Paszkowski J (2004) DNA and histone methylation in plants. Trends Genet 20: 244-251.
43. van der Geest A, Frisch DA, Kemp JD, Hall TC (1995) Cell ablation reveals that expression from the phaseolin promoter is confined to embryogenesis and microsporogenesis. Plant Physiol 109: 1151-1158.
44. Vicente-Carbajosa J, Carbonero P (2005) Seed maturation: developing an intrusive phase to accomplish a quiescent state. Int J Dev Biol 49: 645-651.
45. Viquez OM, Konan KN, Dodo HW (2004) Genomic organization of peanut allergen gene, Ara h 3. Mol Immunol 41: 1235-1240.
46. Wang F, Robotham JM, Teuber SS, Tawde P, Sathe SK, Roux KH (2002) Ana o 1, a cashew (Anacardium occidental) allergen of the vicilin seed storage protein family. J Allergy Clin Immunol 110: 160-166.
47. Williams SK, Tyler JK (2007) Transcriptional regulation by chromatin disassembly and reassembly. Curr Opin Genet Dev 17: 88-93.
48. Williams ME, Foster R, Chua NH (1992) Sequences flanking the hexameric G-box core CACGTG affect the specificity of protein binding. Plant Cell 4: 485-496.
49. Yamada T, Aibara S, Morita Y (1979) Isolation and some properties of arachin subunits. Agric Biol Chem 43: 2549-2556.
50. Yan YS, Lin XD, Zhang YS, Wang L, Wu K, Huang SZ (2005) Isolation of peanut genes encoding arachins and conglutins by expressed sequence tags. Plant Sci 169: 439-445.
51. Zhao J, Herrera-Diaz J, Gross DS (2005) Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density. Mol Cell Biol 25: 8985-8999.