Traffic of cytoskeletal motors with disordered attachment rates

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 81, Issue 3, 2010, Pages

  Grzeschik, H ^a   Harris, R J ^a,b   Santen, L ^a  

^a SAARLAND UNIVERSITY   (Germany)

^b QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

APPROXIMATE TREATMENT; ATTACHMENT RATE; CYTOSKELETAL MOTORS; DENSITY REGIME; INTRACELLULAR TRANSPORT; LATTICE-BASED MODELS; MOLECULAR MOTORS; MOTOR CURRENTS; MULTI-PARTICLE MODELS; QUANTITATIVE AGREEMENT; SIMULATION RESULT; TAU PROTEINS;

STOCHASTIC MODELS;

EID: 77950451656     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.81.031929     Document Type: Article

References (52)

1. B. Alberts, B. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Molecular Biology of the Cell, 3rd ed. (Taylor & Francis, London, 2002).
2. K. B. Avraham, in Molecular Motors, edited by, M. Schliwa, (Wiley-VCH, Weinheim, 2003), Chap., pp. 511-537.
3. G. B. Stokin, Science 307, 1282 (2005). 10.1126/science.1105681
4. B. Trinczek, A. Ebneth, E. Mandelkow, and E. Mandelkow, J. Cell Sci. 112, 2355 (1999).
5. A. Seitz, H. Kojima, K. Oiwa, E.-M. Mandelkow, Y.-H. Song, and E. Mandelkow, EMBO J. 21, 4896 (2002). 10.1093/emboj/cdf503
6. F. Jülicher, A. Ajdari, and J. Prost, Rev. Mod. Phys. 69, 1269 (1997). 10.1103/RevModPhys.69.1269
7. R. Mallik, B. C. Carter, S. A. Lex, S. J. King, and S. P. Gross, Nature (London) 427, 649 (2004). 10.1038/nature02293
8. M. P. Singh, R. Mallik, S. P. Gross, and C. C. Yu, Proc. Natl. Acad. Sci. U.S.A. 102, 12059 (2005). 10.1073/pnas.0501570102
9. S. Klumpp and R. Lipowsky, Proc. Natl. Acad. Sci. U.S.A. 102, 17284 (2005). 10.1073/pnas.0507363102
10. K. Nishinari, Y. Okada, A. Schadschneider, and D. Chowdhury, Phys. Rev. Lett. 95, 118101 (2005). 10.1103/PhysRevLett.95.118101
11. M. Schliwa and G. Woehlke, Nature (London) 422, 759 (2003). 10.1038/nature01601
12. B. Derrida and J. L. Lebowitz, Phys. Rev. Lett. 80, 209 (1998). 10.1103/PhysRevLett.80.209
13. R. Lipowsky, S. Klumpp, and T. M. Nieuwenhuizen, Phys. Rev. Lett. 87, 108101 (2001). 10.1103/PhysRevLett.87.108101
14. A. Parmeggiani, T. Franosch, and E. Frey, Phys. Rev. Lett. 90, 086601 (2003). 10.1103/PhysRevLett.90.086601
15. H. Hinsch, R. Kouyos, and E. Frey, in Traffic and Granular Flow '05, edited by, A. Schadschneider, T. Pöschel, R. Kühne, M. Schreckenberg, and, D. Wolf, (Springer, Berlin, Heidelberg, 2007), pp. 205-222. 10.1007/978-3-540-47641-2-17
16. D. Chowdhury, A. Schadschneider, and K. Nishinari, in Traffic and Granular Flow '05, edited by, A. Schadschneider, T. Pöschel, R. Kühne, M. Schreckenberg, and, D. Wolf, (Springer, Berlin, Heidelberg, 2007), pp. 223-238. 10.1007/978-3-540-47641-2-18
17. S. Klumpp, M. J. I. Müller, and R. Lipowsky, in Traffic and Granular Flow '05, edited by, A. Schadschneider, T. Pöschel, R. Kühne, M. Schreckenberg, and, D. Wolf, (Springer, Berlin, Heidelberg, 2007), pp. 251-261. 10.1007/978-3-540-47641-2-20
18. S. Klumpp and R. Lipowsky, J. Stat. Phys. 113, 233 (2003). 10.1023/A:1025778922620
19. S. Gunawardena and L. S. B. Goldstein, J. Neurobiol. 58, 258 (2004). 10.1002/neu.10319
20. B. Derrida, Phys. Rep. 301, 65 (1998). 10.1016/S0370-1573(98)00006-4
21. O. Schweers, E. Schönbrunn-Hanebeck, A. Marx, and E. Mandelkow, J. Biol. Chem. 269, 24290 (1994).
22. R. A. Santarella, G. Skiniotis, K. N. Goldie, P. Tittmann, H. Gross, E.-M. Mandelkow, E. Mandelkow, and A. Hoenge, J. Mol. Biol. 339, 539 (2004). 10.1016/j.jmb.2004.04.008
23. M. J. I. Müller, S. Klumpp, and R. Lipowsky, J. Phys.: Condens. Matter 17, S3839 (2005). 10.1088/0953-8984/17/47/014
24. R. Lipowsky, Y. Chai, S. Klumpp, S. Liepelt, and M. J. Müller, Physica A 372, 34 (2006). 10.1016/j.physa.2006.05.019
25. A. Samsonov, J.-Z. Yu, M. Rasenick, and S. V. Popov, J. Cell Sci. 117, 6129 (2004). 10.1242/jcs.01531
26. V. Popkov and I. Peschel, Phys. Rev. E 64, 026126 (2001). 10.1103/PhysRevE.64.026126
27. R. J. Harris and R. B. Stinchcombe, Physica A 354, 582 (2005). 10.1016/j.physa.2005.02.030
28. E. Pronina and A. B. Kolomeisky, Physica A 372, 12 (2006). 10.1016/j.physa.2006.05.006
29. H. Hinsch and E. Frey, Phys. Rev. Lett. 97, 095701 (2006). 10.1103/PhysRevLett.97.095701
30. R. B. Stinchcombe, J. Phys.: Condens. Matter 14, 1473 (2002). 10.1088/0953-8984/14/7/306
31. M. Barma, Physica A 372, 22 (2006). 10.1016/j.physa.2006.05.002
32. M. R. Evans, T. Hanney, and Y. Kafri, Phys. Rev. E 70, 066124 (2004). 10.1103/PhysRevE.70.066124
33. G. Tripathy and M. Barma, Phys. Rev. E 58, 1911 (1998). 10.1103/PhysRevE.58.1911
34. J. Krug, Braz. J. Phys. 30, 97 (2000). 10.1590/S0103-97332000000100009
35. K. M. Kolwankar and A. Punnoose, Phys. Rev. E 61, 2453 (2000). 10.1103/PhysRevE.61.2453
36. R. J. Harris and R. B. Stinchcombe, Phys. Rev. E 70, 016108 (2004). 10.1103/PhysRevE.70.016108
37. R. Juhász, L. Santen, and F. Iglói, Phys. Rev. Lett. 94, 010601 (2005). 10.1103/PhysRevLett.94.010601
38. A. Ajdari, Europhys. Lett. 31, 69 (1995). 10.1209/0295-5075/31/2/002
39. T. M. Nieuwenhuizen, S. Klumpp, and R. Lipowsky, Europhys. Lett. 58, 468 (2002). 10.1209/epl/i2002-00662-4
40. A. M. Berezhkovskii, A. Szabo, and G. H. Weiss, J. Chem. Phys. 110, 9145 (1999). 10.1063/1.478836
41. E. Geva and J. L. Skinner, Chem. Phys. Lett. 288, 225 (1998). 10.1016/S0009-2614(98)00322-4
42. M. Boguñá, A. M. Berezhkovskii, and G. H. Weiss, Physica A 282, 475 (2000). 10.1016/S0378-4371(00)00091-1
43. G. H. Weiss and S. Havlin, J. Chem. Phys. 83, 5670 (1985). 10.1063/1.449691
44. C. Van den Broeck and M. Bouten, J. Stat. Phys. 45, 1031 (1986). 10.1007/BF01020587
45. J. W. Haus and K. W. Kehr, Phys. Rep. 150, 263 (1987). 10.1016/0370-1573(87)90005-6
46. T. M. Nieuwenhuizen and H. Brand, J. Stat. Phys. 59, 53 (1990). 10.1007/BF01015563
47. M. D. Hatlee and J. J. Kozak, Phys. Rev. B 23, 1713 (1981). 10.1103/PhysRevB.23.1713
48. G. H. Weiss, J. Stat. Phys. 24, 587 (1981). 10.1007/BF01011376
49. T. Aspelmeier, J. Magnin, W. Graupner, and U. C. Täuber, Eur. Phys. J. B 28, 441 (2002). 10.1140/epjb/e2002-00247-1
50. B. Derrida and M. R. Evans, J. Phys. I 3, 311 (1993). 10.1051/jp1:1993132
51. Y. Chai, R. Lipowsky, and S. Klumpp, J. Stat. Phys. 135, 241 (2009). 10.1007/s10955-009-9715-3
52. O. A. Shemesh, H. Erez, I. Ginzburg, and M. E. Spira, Traffic (Oxford, U. K.) 9, 458 (2008). 10.1111/j.1600-0854.2007.00695.x