Mapping of quantitative trait loci for high level of self-incompatibility in Brassica rapa L

Genome

Volumn 53, Issue 4, 2010, Pages 257-265

  Hatakeyama, Katsunori ^a   Horisaki, Atsushi ^b,e   Niikura, Satoshi ^b   Narusaka, Yoshihiro ^c   Abe, Hiroshi ^d   Yoshiaki, Hitoshi ^a   Ishida, Masahiko ^a   Fukuoka, Hiroyuki ^a   Matsumoto, Satoru ^a  

^a NATIONAL INSTITUTE OF VEGETABLE AND TEA SCIENCE   (Japan)

^b Tohoku Seed Company   (Japan)

^c Research Institute of Biological Sciences   (Japan)

^d RIKEN BIORESOURCE CENTER   (Japan)

^e Ishikawa Agricultural Research Center   (Japan)

Author keywords

Brassica rapa L.; F1 seed production; Level of self incompatibility; QTL; SSR

Indexed keywords

PLANT DNA;

ANIMAL; ARTICLE; CHROMOSOME MAP; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GROWTH, DEVELOPMENT AND AGING; INBREEDING; INSECT; PARASITOLOGY; PHYSIOLOGY; PLANT CHROMOSOME; PLANT SEED; POLLINATION; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT LOCUS; TURNIP;

ANIMALS; BRASSICA RAPA; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; DNA, PLANT; GENETIC LINKAGE; GENETIC MARKERS; INBREEDING; INSECTS; POLLINATION; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT LOCI; SEEDS;

BRASSICA; BRASSICA RAPA; BRASSICA RAPA SUBSP. PEKINENSIS; BRASSICA RAPA SUBSP. RAPA; HEXAPODA;

EID: 77950376018     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G10-001     Document Type: Article

References (44)

1. Boggs, N.A., Nasrallah, J.B., Nasrallah, M.E., and Copenhaver, G.P. 2009. Independent S-locus mutations caused self-fertility in Arabidopsis thaliana. PLoS Genet. 5(3): e1000426. doi:10.1371/ journal.pgen.1000426. PMID:19300485.
2. Bower, M.S., Matias, D.D., Fernandes-Carvalho, E., Mazzurco, M., Gu, T., Rothstein, S.J., and Goring, D.R. 1996. Two members of the thioredoxin-h family interact with the kinase domain of a Brassica S locus receptor kinase. Plant Cell, 8(9): 1641-1650. doi:10.1105/tpc.8.9.1641. PMID:8837514.
3. Carter, A.L., and McNeilly, T. 1976. Increased atmospheric humidity post pollination: a possible aid to the production of inbred line seed from mature flowers in the Brussels sprout (Brassica oleracea var. gemmifera). Euphytica, 25(1): 531-538. doi:10. 1007/BF00041588.
4. Choi, S.R., Teakle, G.R., Plaha, P., Kim, J.H., Allender, C.J., Beynon, E., et al. 2007. The reference genetic linkage map for the multinational Brassica rapa genome sequencing project. Theor. Appl. Genet. 115(6): 777-792.doi:10.1007/s00122-007-0608-z. PMID:17646962.
5. Dixit, R., Nasrallah, M.E., and Nasrallah, J.B. 2000. Post-transcriptional maturation of the S receptor kinase of Brassica correlates with co-expression of the S-locus glycoprotein in the stigmas of two Brassica strains and in transgenic tobacco plants. Plant Physiol. 124(1): 297-311. doi:10.1104/pp.124.1.297. PMID: 10982444.
6. Fukuoka, H., Nunome, T., Minamiyama, Y., Kono, I., Namiki, N., and Kojima, A. 2005. Read2Marker: a data processing tool for microsatellite marker development from a large data set. Biotechniques, 39(4): 472-476. doi:10.2144/000112025. PMID: 16235557.
7. Gu, T., Mazzurco, M., Sulaman, W., Matias, D.D., and Goring, D.R. 1998. Binding of an arm repeat protein to the kinase domain of the S-locus receptor kinase. Proc. Natl. Acad. Sci. U.S.A. 95(1): 382-387. doi:10.1073/pnas.95.1.382. PMID: 9419384.
8. Horisaki, A., and Niikura, S. 2004. Effectiveness of insect-pollination to evaluate the level of self-incompatibility and genetic variation in Brassica rapa L. Breed. Sci. 54(3): 291-295. doi:10. 1270/jsbbs.54.291.
9. Horisaki, A., and Niikura, S. 2007. Diallel analysis of the level of self-incompatibility evaluated by insect-pollination in Brassica rapa L. Breed. Sci. 57(1): 59-63. doi:10.1270/jsbbs.57.59.
10. Horisaki, A., and Niikura, S. 2008. Developmental and environmental factors affecting level of self-incompatibility response in Brassica rapa L. Sex. Plant Reprod. 21(2): 123-132. doi:10. 1007/s00497-008-0071-2.
11. Horisaki, A., Tanaka, N., and Niikura, S. 2003. The effectiveness of insect-pollination test to evaluate the level of self-incompatibility and their genetic analysis in radish (Raphanus sativus L.). Theor. Appl. Genet. 107(6): 1009-1013. doi:10.1007/s00122-003-1256-6. PMID:12679870.
12. 9 genome. Mol. Genet. Genomics, 265(3): 526-534. doi:10.1007/s004380000441. PMID: 11405636.
13. Kakita, M., Murase, K., Iwano, M., Matsumoto, T., Watanabe, M., Shiba, H., et al. 2007. Two distinct forms of M-locus protein kinase localize to the plasma membrane and interact directly with S-locus receptor kinase to transduce self-incompatibility signaling in Brassica rapa. Plant Cell, 19(12): 3961-3973.doi:10.1105/tpc.106.049999. PMID:18065692.
14. Kosambi, D.D. 1944. The estimation of map distance from recombination values. Ann. Eugen. 12: 172-175.
15. Kukita, Y., and Hayashi, K. 2002. Multicolor post-PCR labeling of DNA fragments with fluorescent ddNTPs. Biotechniques, 33(3): 502-506. PMID:12238759.
16. Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Daly, M.J., Lincoln, S.E., et al. 1987. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1(2): 174-181. doi:10.1016/0888-7543(87)90010-3. PMID:3692487.
17. Liu, P., Sherman-Broyles, S., Nasrallah, M.E., and Nasrallah, J.B. 2007. A cryptic modifier causing transient self-incompatibility in Arabidopsis thaliana. Curr. Biol. 17(8): 734-740. doi:10.1016/j.cub.2007.03.022. PMID:17412590.
18. Lowe, A.J., Moule, C., Trick, M., and Edwards, K.J. 2004. Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theor. Appl. Genet. 108(6): 1103-1112. doi:10.1007/s00122-003-1522-7. PMID:15067397.
19. Luu, D.T., Heizmann, P., Dumas, C., Trick, M., and Cappadocia, M. 1997. Involvement of SLR1 genes in pollen adhesion to the stigmatic surface in Brassicaceae. Sex. Plant Reprod. 10(4): 227-235. doi:10.1007/s004970050091.
20. Murase, K., Shiba, H., Iwano, M., Che, F.S., Watanabe, M., Isogai, A., and Takayama, S. 2004. A membrane-anchored protein kinase involved in Brassica self-incompatibility signaling. Science, 303(5663): 1516-1519. doi:10.1126/science.1093586. PMID:15001779.
21. Nasrallah, M.E., and Wallace, D.H. 1968. The influence of modifier genes on the intensity and stability of self-incompatibility in cabbage. Euphytica, 17(3): 495-503. doi:10.1007/BF00056254.
22. Nasrallah, J.B., Kao, T.H., Chen, C.H., Goldberg, M.L., and Nasrallah, M.E. 1987. Amino-acid sequence of glycoproteins encoded by three alleles of the S locus of Brassica oleracea. Nature, 326(6113): 617-619. doi:10.1038/326617a0.
23. Nasrallah, M.E., Liu, P., and Nasrallah, J.B. 2002. Generation of self-incompatible Arabidopsis thaliana by transfer of two S locus genes from A. lyrata. Science, 297(5579): 247-249. doi:10. 1126/science.1072205. PMID:12114625.
24. Nasrallah, M.E., Liu, P., Sherman-Broyles, S., Boggs, N.A., and Nasrallah, J.B. 2004. Natural variation in expression of selfincompatibility in Arabidopsis thaliana: implications for the evolution of selfing. Proc. Natl. Acad. Sci. U.S.A. 101(45): 16070-16074. doi:10.1073/pnas.0406970101. PMID:15505209.
25. Niikura, S., and Matsuura, M. 1998. Identification of self-incompatibility alleles (S) by PCR-RFLP in radish (Raphanus sativus L.). Euphytica, 102(3): 379-384. doi:10.1023/A:1018313801728.
26. Nishio, T., Kusaba, M., Watanabe, M., and Hinata, K. 1998. Registration of S alleles in Brassica campestris L by the restriction fragment of SLGs. Theor. Appl. Genet. 92: 388-394. doi:10. 1007/BF00223684.
27. Ockendon, D.J. 1978. Effects of hexane and humidity on selfincompatibility in Brassica oleracea. Theor. Appl. Genet. 52(3): 113-117. doi:10.1007/BF00264743.
28. Okazaki, K., and Hinata, K. 1987. Repressing the expression of self-incompatibility in crucifers by short-term high temperature treatment. Theor. Appl. Genet. 73(4): 496-500. doi:10.1007/BF00289185.
29. Richards, R.A., and Thurling, N. 1973. The genetics of self-incompatibility in Brassica campestris L. ssp. oleifera Metzg. II. Genotypic and environmental modification of S locus control. Genetica, 44(3): 439-453. doi:10.1007/BF00161316.
30. Ruffio-Châble, V., Hervé, Y., Dumas, C., and Gaude, T. 1997. Distribution of S-haplotypes and its relationship with selfincompatibility in Brassica oleracea. Part 1. In inbred lines of cauliflower (B. oleracea var. 'botrytis'). Theor. Appl. Genet. 94: 338-346. doi:10.1007/s001220050421.
31. Sakamoto, K., and Nishio, T. 2001. Distribution of S haplotypes in commercial cultivars of Brassica rapa. Plant Breed. 120(2): 155-161. doi:10.1046/j.1439-0523.2001.00575.x.
32. Schopfer, C.R., Nasrallah, M.E., and Nasrallah, J.B. 1999. The male determinant of self-incompatibility in Brassica. Science, 286(5445): 1697-1700.doi:10.1126/science.286.5445.1697. PMID:10576728.
33. Sherman-Broyles, S., and Nasrallah, J.B. 2008. Self-incompatibility and evolution of mating systems in Brassicaceae. In Self-incompatibility in flowering plants: evolution, diversity, and mechanisms. Edited by V.E. Franklin-Tong. Springer, Berlin. pp. 123-147.
34. Silva, N.F., Stone, S.L., Christie, L.N., Sulaman, W., Nazarian, K.A., Burnett, L.A., et al. 2001. Expression of the S receptor kinase in self-compatible Brassica napus cv. Westar leads to the allele-specific rejection of self-incompatible Brassica napus pollen. Mol. Genet. Genomics, 265(3): 552-559.doi:10.1007/s004380100446. PMID:11405639.
35. Stein, J.C., Howlett, B., Boyes, D.C., Nasrallah, M.E., and Nasrallah, J.B. 1991. Molecular cloning of a putative receptor protein kinase gene encoded at the self-incompatibility locus of Brassica oleracea. Proc. Natl. Acad. Sci. U.S.A. 88(19): 8816-8820. doi:10.1073/pnas.88.19.8816. PMID:1681543.
36. Suwabe, K., Iketani, H., Nunome, T., Kage, T., and Hirai, M. 2002. Isolation and characterization of microsatellites in Brassica rapa L. Theor. Appl. Genet. 104(6-7): 1092-1098.doi:10.1007/s00122-002-0875-7. PMID:12582617.
37. Suwabe, K., Iketani, H., Nunome, T., Ohyama, A., Hirai, M., and Fukuoka, H. 2004. Characteristics of microsatellites in Brassica rapa genome and their potential utilization for comparative genomics in Cruciferae. Breed. Sci. 54: 85-90.
38. Suwabe, K., Tsukazaki, H., Iketani, H., Hatakeyama, K., Kondo, M., et al. 2006. Simple sequence repeat-based comparative genomics between Brassica rapa and Arabidopsis thaliana: the genetic origin of clubroot resistance. Genetics, 173(1): 309-319. doi:10.1534/genetics.104.038968. PMID:16723420.
39. Suzuki, G., Kai, N., Hirose, T., Fukui, K., Nishio, T., Takayama, S., et al. 1999. Genomic organization of the S locus: identification and characterization of genes in SLG/SRK region of S9 haplotype of Brassica campestris (syn. rapa). Genetics, 153(1): 391-400. PMID:10471721.
40. Takasaki, T., Hatakeyama, K., Suzuki, G., Watanabe, M., Isogai, A., and Hinata, K. 2000. The S receptor kinase determines selfincompatibility in Brassica stigma. Nature, 403(6772): 913-916. doi:10.1038/35002628. PMID:10706292.
41. Takayama, S., and Isogai, A. 2005. Self-incompatibility in plants. Annu. Rev. Plant Biol. 56(1): 467-489. doi:10.1146/annurev.arplant.56.032604.144249. PMID:15862104.
42. Takayama, S., Shiba, H., Iwano, M., Shimosato, H., Che, F.S., Kai, N., et al. 2000. The pollen determinant of self-incompatibility in Brassica campestris. Proc. Natl. Acad. Sci. U.S.A. 97(4): 1920-1925.doi:10.1073/pnas.040556397. PMID:10677556.
43. Takuno, S., Fujimoto, R., Sugimura, T., Sato, K., Okamoto, S., Zhang, S.L., and Nishio, T. 2007. Effects of recombination on hitchhiking diversity in the Brassica self-incompatibility locus complex. Genetics, 177(2): 949-958.doi:10.1534/genetics.107. 073825. PMID:17720932.
44. Wang, S., Basten, C.J., and Zeng, Z.B. 2007. Windows QTL Cartographer. Version 2.5 [computer program]. Department of Statistics, North Carolina State University, Raleigh, N.C. Available from http://statgen.ncsu.edu/qtlcart/WQTLCart.htm.