Genomic organization of the S locus: Identification and characterization of genes in SLG/SRK region of S9 haplotype of Brassica campestris (syn. rapa)

Genetics

Volumn 153, Issue 1, 1999, Pages 391-400

  Suzuki, Go ^a,g   Kai, Naoko ^a   Hirose, Tamaki ^b   Fukui, Kiichi ^c   Nishio, Takeshi ^a   Takayama, Seiji ^d   Isogai, Akira ^d   Watanabe, Masao ^e   Hinata, Kokichi ^f  

^a TOHOKU UNIVERSITY   (Japan)

^b NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

^c OSAKA UNIVERSITY   (Japan)

^d NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^e IWATE UNIVERSITY   (Japan)

^f Res Inst of Seed Prod Co Ltd   (Japan)

^g OSAKA KYOIKU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BRASSICA; FLUORESCENCE IN SITU HYBRIDIZATION; GENE EXPRESSION REGULATION; GENE LOCUS; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC ORGANIZATION; GENETIC POLYMORPHISM; HAPLOTYPE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DETERMINATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

AMINO ACID SEQUENCE; BASE COMPOSITION; BRASSICA; CLONING, MOLECULAR; DNA TRANSPOSABLE ELEMENTS; GENE EXPRESSION; GENE EXPRESSION REGULATION, PLANT; GENE LIBRARY; GENES, PLANT; GENOME, PLANT; GLYCOPROTEINS; HAPLOTYPES; LINKAGE (GENETICS); MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYSICAL CHROMOSOME MAPPING; PLANT COMPONENTS; PLANT PROTEINS; POLYMORPHISM, GENETIC; RNA, MESSENGER; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0032829709     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (55)

1. ALTSCHUL, S. F., W. GISH, W. MILLER, E. W. MYERS and D. J. LIPMAN, 1990 Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. ARUMUGANATHAN, K., and E. D. EARLE, 1991 Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218.
3. BARAKAT, A., N. CARELS and G. BERNARDI, 1997 The distribution of genes in the genomes of Gramineae. Proc. Natl. Acad. Sci. USA 94: 6857-6861.
4. BARAKAT, A., G. MATASSI and G. BERNARDI, 1998 Distribution of genes in the genome of Arabidopsis thaliana and its implications for the genome organization of plants. Proc. Natl. Acad. Sci. USA 95: 10044-10049.
5. BATEMAN, A. J., 1955 Self-incompatibility systems in angiosperms. III. Cruciferae. Heredity 9: 52-68.
6. BENSIMON, A., A. SIMON, A. CHIFFAUDEL, V. CROQUETTE, F. HESLOT et al., 1994 Alignment and sensitive detection of DNA by a moving interface. Science 265: 2096-2098.
7. BERNACCHI, D., and S. D. TANKSLEY, 1997 An interspecific backcross of Lycopersicon esculentum X L. hirsutum: linkage analysis and a QTL study of sexual compatibility factors and floral traits. Genetics 147: 861-877.
8. BERNARDI, G., 1989 The isochore organization of the human genome. Annu. Rev. Genet. 23: 637-661.
9. BEVAN, M., I. BANCROFT, E. BENT, K. LOVE, H. GOODMAN et al., 1998 Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana. Nature 391: 485-488.
10. BOYES, D. C., and J. B. NASRALLAH, 1993 Physical linkage of the SLG and SRK genes at the self-incompatibility locus of Brassica oleracea. Mol. Gen. Genet. 236: 369-373.
11. BOYES, D. C., and J. B. NASRALLAH, 1995 An anther-specific gene encoded by an Slocus haplotype of Brassica produces complementary and differentially regulated transcripts. Plant Cell 7: 1283-1294.
12. BOYES, D. C., M. E. NASRALLAH, J. VREBALOV and J. B. NASRALLAH, 1997 The self-incompatibility (S) haplotypes of Brassica contain highly divergent and rearranged sequences of ancient origin. Plant Cell 9: 237-347.
13. BURGE, C., and S. KARLIN, 1997 Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268: 78-94.
14. CHIANG, C. C., and L. A. HADWIGER, 1991 The Fusarium solani-induced expression of a pea gene family encoding high cysteine content proteins. Mol. Plant-Microbe Interact. 4: 324-331.
15. CONNER, J. A., T. TANTIKANJANA, J. C. STEIN, M. K. KANDASAMY, J. B. NASRALLAH et al., 1997 Transgene-induced silencing of S-locus genes and related genes in Brassica. Plant J. 11: 809-823.
16. CONNER, J. A., P. CONNER, M. E. NASRALLAH and J. B. NASRALLAH, 1998 Comparative mapping of the Brassica S locus region and its homeolog in Arabidopsis: implications for the evolution of mating system in the Brassicaceae. Plant Cell 10: 801-812.
17. 3 haplotype: identification of a membrane localized protein encoded by the S locus receptor kinase gene. Plant J. 7: 429-440.
18. DOUGHTY, J., S. DIXON, S. J. HISCOCK, A. C. WILLIS, I. A. P. PARKIN et al., 1998a PCP-A1, a defensin-like Brassica pollen coat protein that binds the S locus glycoprotein, is the product of gametophytic gene expression. Plant Cell 10: 1333-1347.
19. DOUGHTY, J., S. DIXON, A. STEPHENSON, S. HISCOCK and H. DICKINSON, 1998b Recognition at the pollen-stigma interface in Brassica: the role of the pollen coating, p. 25 in XVth International Congress on Sexual Plant Reproduction, Wageningen.
20. DZELZKALNS, V. A., M. K. THORSNESS, K. G. DWYER, J. S. BAXTER, M. A. BALENT et al., 1993 Distinct cis-acting elements direct pistil specific and pollen-specific activity of the Brassica S locus glycoprotein gene promoter. Plant Cell 5: 855-863.
21. FRANSZ, P. F., C. ALONSO-BLANCO, T. B. LIHARSKA, A. J. M. PEETERS, P. ZABEL et al., 1996 High-resolution physical mapping in Arabidopsis thaliana and tomato by fluorescence in situ hybridization to extended DNA fibers. Plant J. 9: 421-430.
22. GHOSH, B., M. P. PERRY and D. G. MARSH, 1991 Cloning the cDNA encoding the AmbtV allergen from giant ragweed (Ambrosia trifida) pollen. Gene 101: 231-238.
23. GORING, D. R., T. L. GLAVIN, U. SCHAFER and S. J. ROTHSTEIN, 1993 An S receptor kinase gene in self-compatible Brassica napus has a 1-bp deletion. Plant Cell 5: 531-539.
24. GUIGO, R., and J. W. FICKETT, 1995 Distinctive sequence features in protein coding, genic non-coding, and intergenic human DNA. J. Mol. Biol. 253: 51-60.
25. HESLOP-HARRISON, J., 1975 Incompatibility and the pollen-stigma interaction. Annu. Rev. Plant Physiol. 26: 403-425.
26. KELLY, W. L., 1998 The J-domain family and the recruitment of chaperone power. Trends Biochem. Sci. 23: 222-227.
27. KIANIAN, S. F., and C. F. QUIROS, 1992 Generation of a Brassica oleracea composite RFLP map: linkage arrangements among various populations and evolutionary implications. Theor. Appl. Genet 84: 544-554.
28. KITASHIBA, H., and K. TORIYAMA, 1997 Expression of a gene for a protein similar to HIV-1 tat binding protein 1 (TBP1) in floral organs of Brassica rapa. Plant Cell Physiol. 38: 966-969.
29. LE, S., C. DAVIS, J. B. KONOPKA and R. STERNGLANZ, 1997 Two new S-phase-specific genes from Saccharomyces cerevisiae. Yeast 13: 1029-1042.
30. LETHAM, D. L. D., and J. B. NASRALLAH, 1998 A ClpP homolog linked to the Brassica self-incompatibility (S) locus. Sex. Plant Reprod. 11:117-119.
31. MOUCHIROUD, D., G. D'ONOFRIO, B. AISSANI, G. MACAYA, C. GAUTIER et al., 1991 The distribution of genes in the human genome. Gene 110: 181-187.
32. MURRAY, M. G., and W. F. THOMPSON, 1980 Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8: 4321-4325.
33. NASRALLAH, J. B., and M. E. NASRALLAH, 1993 Pollen-stigma signaling in the sporophytic self-incompatibility response. Plant Cell 5: 1325-1335.
34. NASRALLAH, J. B., S.-M. YU and M. E. NASRALLAH, 1988 Self-incompatibility genes of Brassica oleracea: expression, isolation, and structure. Proc. Natl. Acad. Sci. USA 85: 5551-5555.
35. NASRALLAH, M. E., M. K. KANDASAMY and J. B. NASRALLAH, 1992 A genetically defined trans-acting locus regulates S-locus function in Brassica. Plant J. 2: 497-506.
36. NASRALLAH, J. B., S. J. RUNDLE and M. E. NASRALLAH, 1994 Genetic evidence for the requirement of the Brassica S-locus receptor kinase gene in the self-incompatibility response. Plant J. 5: 373-384.
37. OHMIDO, N., and K. FUKUI, 1997 Visual verification of close disposition between a rice A genome-specific DNA sequence (TrsA) and the telomere sequence. Plant Mol. Biol. 35: 963-968.
38. OHMIDO, N., Y. AKIYAMA and K. FUKUI, 1998 Physical mapping of unique nucleotide sequences on identified rice chromosomes. Plant Mol. Biol. 38: 1043-1052.
39. PASTUGLIA, M., V. RUFFIO-CHABLE, V. DELORME, T. GAUDE, C. DUMAS et al., 1997 A functional S locus anther gene is not required for the self-incompatibility response in Brassica oleracea. Plant Cell 9: 2065-2076.
40. SATO, S., H. KOTANI, Y. NAKAMURA, T. KANEKO, E. ASAMIZU et al., 1997 Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones. DNA Res. 4: 215-230.
41. SHIBA, H., K. HINATA, A. SUZUKI and A. ISOGAI, 1995 Breakdown of self-incompatibility in Brassica by the antisense RNA of the SLG gene. Proc. Jpn. Acad. 71: 81-83.
42. SNOWDEN, K. C., and C. A. NAPOLI, 1998 Psl: a novel Spm-like transposable element from Petunia hybrida. Plant J. 14: 43-54.
43. SONG, K. M., J. Y. SUZUKI, M. K. SLOCUM, P. H. WILLIAMS and T. C. OSBORN, 1991 A linkage map of Brassica rapa (syn. campestris) based on restriction fragment length polymorphism loci. Theor. Appl. Genet. 82: 296-304.
44. STAHL, R. J., M. ARNOLDO, T. L. GLAVIN, D. R. GORING and S. J. ROTHSTEIN, 1998 The self-incompatibility phenotype in Brassica is altered by the transformation of a mutant S locus receptor kinase. Plant Cell 10: 209-218.
45. STANCHEV, B. S., J. DOUGHTY, C. P. SCUTT, H. DICKINSON and R. R. D. CROY, 1996 Cloning of PCP1, a member of a family of pollen coat protein (PCP) genes from Brassica oleracea encoding novel cysteine-rich proteins involved in pollen-stigma interactions. Plant J. 10: 303-313.
46. STEIN, J. C., B. HOWLETT, D. C. BOYES, M. E. NASRALLAH and J. B. NASRALLAH, 1991 Molecular cloning of a putative receptor protein kinase gene encoded at the self-incompatibility locus of Brassica oleracea. Proc. Natl. Acad. Sci. USA 88: 8816-8820.
47. STEIN, J. C., R. DIXIT, M. E. NASRALLAH and J. B. NASRALLAH, 1996 SRK, the stigma-specific S locus receptor kinase of Brassica, is targeted to the plasma membrane in transgenic tobacco. Plant Cell 8: 429-445.
48. STEPHENSON, A. G., J. DOUGHTY, S. DIXON, C. ELLEMAN, S. HISCOCK et al., 1997 The male determinant of self-incompatibility in Brassica oleracea is located in the pollen coating. Plant J. 12: 1351-1359.
49. SUZUKI, G., M. WATANABE, K. TORIYAMA, A. ISOGAI and K. HINATA, 1995 Molecular cloning of members of the S-multigene family in self-incompatible Brassica campestris L. Plant Cell Physiol. 36: 1273-1280.
50. 9 genes in transgenic tobacco. Plant Cell Physiol. 37: 866-869.
51. SUZUKI, G., M. WATANABE, K. TORIYAMA, A. ISOGAI and K. HINATA, 1997 Direct cloning of the Brassica S locus by using a P1-derived artificial chromosome (PAC) vector. Gene 199: 133-137.
52. TRUCO, M. J., and C. F. QUIROS, 1994 Structure and organization of the B genome based on a linkage map in Brassica nigra. Theor. Appl. Genet. 89: 590-598.
53. WATANABE, M., T. TAKASAKI, K. TORIYAMA, S. YAMAKAWA, A. ISOGAI et al., 1994 A high degree of homology exists between the protein encoded by SLG and the S receptor domain encoded by SRK in self-incompatible Brassica campestris L. Plant Cell Physiol. 35: 1221-1229.
54. 9: identification of a novel S-linked gene specifically expressed in anthers at the uninucleate stage of Brassica campestris (syn. rapa) L. Sex. Plant Reprod. (in press).
55. YU, K., U. SCHAFER, T. L. GLAVIN, D. R. GORING and S. J. ROTHSTEIN, 1996 Molecular characterization of the S locus in two self-incompatible Brassica napus lines. Plant Cell 8: 2369-2380.