Independent 5-locus mutations caused self-fertility in arabidopsis thaliana

PLoS Genetics

Volumn 5, Issue 3, 2009, Pages

  Boggs, Nathan A ^a   Nasrallah, June B ^a   Nasrallah, Mikhail E ^a  

^a Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; GENE; GENE DELETION; GENE IDENTIFICATION; GENE LOCUS; GENE MUTATION; GENE REARRANGEMENT; GENE SCR; GENE SRK; GENE STRUCTURE; GENETIC RECOMBINATION; GENETIC TRANSFORMATION; HAPLOTYPE; NONHUMAN; PHENOTYPE; QUANTITATIVE TRAIT LOCUS; SELF INCOMPATIBILITY; TRANSGENICS; EVOLUTION; FERTILITY; GENETICS; MUTATION;

ARABIDOPSIS THALIANA; MAGNOLIOPHYTA;

PROTEIN KINASE; S RECEPTOR KINASE; S-RECEPTOR KINASE; VEGETABLE PROTEIN;

ARABIDOPSIS; EVOLUTION; FERTILITY; HAPLOTYPES; MUTATION; PLANT PROTEINS; PROTEIN KINASES; QUANTITATIVE TRAIT LOCI; RECOMBINATION, GENETIC;

EID: 63449130716     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000426     Document Type: Article

References (54)

1. Goddard MR, Godfray HC, Burt A (2005) Sex increases the efficacy of natural selection in experimental yeast populations. Nature 434: 636-640.
2. Zeyl C, Bell G (1997) The advantage of sex in evolving yeast populations. Nature 388: 465-468.
3. Paland S, Lynch M (2006) Transitions to asexuality result in excess amino acid substitutions. Science 311: 990-992.
4. Barrett SC (2002) The evolution of plant sexual diversity. Nat Rev Genet 3: 274-284.
5. Stebbins GL (1957) Self-fertilization and population variability in the higher plants. Am Nat 91: 337-354.
6. Jain SK (1976) The evolution of inbreeding in plants. Annu Rev Ecol Syst 7: 469-495.
7. Jarne P, Charlesworth B (1993) The evolution of the selfing rate in functionally hermaphrodite plants and animals. Annu Rev Ecol Syst 24: 441-466.
8. Porcher E, Lande R (2005) Loss of gametophytic self-incompatibility with inbreeding depression. Evolution 59: 46-60.
9. Rea AC, Nasrallah JB (2008) Self-incompatibility systems: barriers to self- fertilization in flowering plants. Int J Dev Biol 52: 627-636.
10. Stein JC, Howlett B, Boyes DC, Nasrallah ME, NasrallahJB (1991) Molecular cloning of a putative receptor protein kinase gene encoded at the self- incompatibility locus of Brasska oleracea. Proc Natl Acad Sci USA 88: 8816-8820.
11. Schopfer CR, Nasrallah ME, Nasrallah JB (1999) The male determinant of self-incompatibility in Brassica. Science 286: 1697-1700.
12. Kachroo A, Schopfer CR, Nasrallah ME, Nasrallah JB (2001) Allele-specific receptor-ligand interactions in Brassica self-incompatibility. Science 293: 1824-1826.
13. Takayama S, Shimosato H, Shiba H, Funato M, Che FS, et al. (2001) Direct ligand-receptor complex interaction controls Brassica self-incompatibility. Nature 413: 534-538.
14. Boyes DC, Nasrallah ME, Vrebalov J, Nasrallah JB (1997) The self- incompatibility (S)haplotypesof Brassica contain highly divergent and rearranged sequences of ancient origin. Plant Cell 9: 237-247.
15. Casselman AL, Vrebalov J, Conner JA, Singhal A, Giovannoni J, et al. (2000) Determining the physical limits of the Brassica S locus by recombinational analysis. Plant Cell 12: 23-33.
16. Schierup MH, Vekemans X (2008) Genomic consequences of selection on self- incompatibility genes. Curr Opin Plant Biol 11: 116-122.
17. Kamau E, Charlesworth B, Charlesworth D (2007) Linkage disequilibrium and recombination rate estimates in the self-incompatibility region of Arabidopsis lyrata. Genetics 176: 2357-2369.
18. Fujimoto R, Okazaki K, Fukai E, Kusaba M, Nishio T (2006) Comparison of the genome structure of the self-incompatibility (S) locus in interspecific pairs of S haplotypes. Genetics 173: 1157-1167.
19. Uyenoyama MK, Zhang Y, Newbigin E (2001) On the origin of self- incompatibility haplotypes: transition through self-compatible intermediates. Genetics 157: 1805-1817.
20. Steinemann S, Steinemann M (2005) Retroelements: tools for sex chromosome evolution. Cytogenet Genome Res 110: 134-143.
21. Nasrallah JB (2000) Cell-cell signaling in the self-incompatibility response. Curr Opin Plant Biol 3: 368-373.
22. Hagenblad J, Bechsgaard J, Charlesworth D (2006) Linkage disequilibrium between incompatibility locus region genes in the plant Arabidopsis lyrata. Genetics 173: 1057-1073.
23. Kusaba M, Dwyer K, Hendershot J, Vrebalov J, Nasrallah JB, et al. (2001) Self- incompatibility in the genus Arabidopsis: Characterization of the S locus in the outcrossing A. lyrata and its autogamous relative A. thaliana. Plant Cell 13: 627-643.
24. Koch MA, Haubold B, Mitchell-Olds T (2000) Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol Biol Evol 17: 1483-1498.
25. Nasrallah ME, Liu P, Nasrallah JB (2002) Generation of self-incompatible Arabidopsis thaliana by transfer of two S locus genes from A. lyrata. Science 297: 247-249.
26. Nasrallah M, Liu P, Sherman-Broyles S, Boggs N, Nasrallah J (2004) Natural variation in expression of self-incompatibility in Arabidopsis thaliana: Implications for the evolution of sefing. Proc Natl Acad Sci U S A 101: 16070-16074.
27. Sherman-Broyles S, Boggs N, Farkas A, Liu P, VrebalovJ, et al. (2007) Slocus genes and the evolution of self-fertility in Arabidopsis thaliana. Plant Cell 19: 94-106.
28. Shimizu KK, Cork JM, Caicedo AL, Mays CA, Moore RC, et al. (2004) Darwinian selection on a selfing Locus. Science 306: 2081-2084.
29. Tang C, Toomajian C, Sherman-Broyles S, Plagnol V, Guo YL, et al. (2007) The evolution of selfing in Arabidopsis thaliana. Science 317: 1070-1072.
30. Bechsgaard JS, Castric V, Charlesworth D, Vekemans X, Schierup MH (2006) The transition to self-compatibility in Arabidopsis thaliana and evolution within S- haplotypes over 10 Myr. Mol Biol Evol 23: 1741-1750.
31. Charlesworth D, Vekemans X (2005) How and when did Arabidopsis thaliana become highly self-fertilising. Bioessays 27: 472-476.
32. Shimizu KK, Shimizu-Inatsugi R, Tsuchimatsu T, Purugganan MD (2008) Independent origins of self-compatibility in Arabidopsis thaliana. Mol Ecol 17: 704-714.
33. Liu P, Sherman-Broyles S, Nasrallah ME, Nasrallah JB (2007) A cryptic modifier causing transient self-incompatibility in Arabidopsis thaliana. Curr Biol 17: 734-740.
34. Alonso-Blanco C, Blankestijn-de Vries H, Hanhart CJ, Koornneef M (1999) Natural allelic variation at seed size loci in relation to other life history traits of Arabidopsis thaliana. Proc Natl Acad Sci U S A 96: 4710-4717.
35. Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, et al. (2005) The pattern ofpolymorphism in Arabidopsis thaliana. PLoS Biol 3: e196.
36. Pennings PS, Hermisson J (2006) Soft sweeps II-molecular population genetics of adaptation from recurrent mutation or migration. Mol Biol Evol 23: 1076-1084.
37. Cano JM, Matsuba C, Makinen H, Merila J (2006) The utility of Q TL-Linked markers to detect selective sweeps in natural populations-a case study of the EDA gene and a linked marker in threespine stickleback. Mol Ecol 15: 4613-4621.
38. Colosimo PF, Hosemann KE, Balabhadra S, Villarreal G Jr., Dickson M, et al. (2005) Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles. Science 307: 1928-1933.
39. Bakker EG, Stahl EA, Toomajian C, Nordborg M, Kreitman M, et al. (2006) Distribution of genetic variation within and among local populations of Arabidopsis thaliana over its species range. Mol Ecol 15: 1405-1418.
40. Drouaud J, Camilleri C, Bourguignon P-Y, Canaguier A, Berard A, et al. (2006) Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination ''hot spots''. Genome Res 16: 106-114.
41. Madlung A, Tyagi AP, Watson B, Jiang H, Kagochi T, et al. (2005) Genomic changes in synthetic Arabidopsis polyploids. Plant J 41: 221-230.
42. Yi H, Richards EJ(2008) Phenotypic instability ofArabidopsis alleles affecting a disease Resistance gene cluster. BMC Plant Biol 8: 36.
43. Cubas P, Vincent C, Coen E (1999) An epigenetic mutation responsible for natural variation in floral symmetry. Nature 401: 157-161.
44. De Sepulveda P, Peyrieras N, Panthier JJ (1994) Instability at the W/c-kit locus in mice: analysis ofmelanocyte cell lines derived from reversion spots. Oncogene 9: 2655-2661.
45. Manning K, Tor M, Poole M, Hong Y, Thompson AJ, et al. (2006) A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat Genet 38: 948-952.
46. Vaughn MW, Tanurd Ic M, Lippman Z, Jiang H, Carrasquillo R, et al. (2007) Epigenetic Natural Variation in Arabidopsis thaliana. PLoS Biol 5: e174.
47. Zhai J, Liu J, Liu B, Li P, Meyers BC, et al. (2008) Small RNA-directed epigenetic natural variation in Arabidopsis thaliana. PLoS Genet 4: e1000056.
48. Zhang X, Shiu S, Cal A, Borevitz JO (2008) Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays. PLoS Genet 4: e1000032.
49. Johannes F, Colot V, Jansen RC (2008) Epigenome dynamics: a quantitative genetics perspective. Nat Rev Genet 9: 883-890.
50. Zhang X, Henriques R, Lin SS, Niu QW, Chua NH (2006) Agrobacterium- mediated transformation of Arabidopsis thaliana using the floral dip method. Nat Protoc 1: 641-646.
51. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325.
52. Kho YO, Baer J (1968) Observing pollen tubes by means of fluorescence Euphytica 17: 298-302.
53. Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18: 233-234.
54. Smyth DR, Bowman JL, Meyerowitz EM (1990) Early flower development in Arabidopsis. Plant Cell 2: 755-767.