Relationship between periodic dinucleotides and the nucleosome structure revealed by alpha shape modeling

Chemical Physics Letters

Volumn 489, Issue 4-6, 2010, Pages 225-228

  Zhou, Weiqiang ^a   Yan, Hong ^a,b  

^a CITY UNIVERSITY OF HONG KONG   (Hong Kong)

^b UNIVERSITY OF SYDNEY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA-SHAPE MODELING; ALPHA-SHAPES; BIOLOGICAL PROCESS; DINUCLEOTIDES; DNA DINUCLEOTIDES; EUKARYOTIC CHROMATIN; NUCLEOSOME STRUCTURE; NUCLEOSOME SURFACE; NUCLEOSOMES; REPEATING UNIT; SPECIAL POSITIONS; STRUCTURAL FEATURE;

PERIODIC STRUCTURES;

EID: 77950296638     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cplett.2010.02.074     Document Type: Article

References (24)

1. Grunstein M. Nature 389 (1997) 349
2. Kornberg R.D., and Lorch Y. Cell 98 (1999) 285
3. Ashburner M., et al. Nat. Genet. 25 (2000) 25
4. Araki S., Hizume K., Iwaki T., Suzuki Y., Takeyasu K., and Yoshikawa K. Chem. Phys. Lett. 479 (2009) 284
5. Tachikawa H., and Kawabata H. Chem. Phys. Lett. 462 (2008) 321
6. Lohikoski R., Timonen J., and Laaksonen A. Chem. Phys. Lett. 407 (2005) 23
7. Lubliner S., and Segal E. Bioinformatics 25 (2009) I348
8. Richmond T.J., and Davey C.A. Nature 423 (2003) 145
9. Ioshikhes I., Bolshoy A., Derenshteyn K., Borodovsky M., and Trifonov E.N. J. Mol. Biol. 262 (1996) 129
10. Bina M. J. Mol. Biol. 235 (1994) 198
11. Segal E., et al. Nature 442 (2006) 772
12. Albou L.P., Schwarz B., Poch O., Wurtz J.M., and Moras D. Proteins 76 (2009) 1
13. Poupon A. Curr. Opin. Struc. Biol. 14 (2004) 233
14. Edelsbrunner H., Facello M., and Liang J. Discrete Appl. Math. 88 (1998) 83
15. Pontius J., Richelle J., and Wodak S.J. J. Mol. Biol. 264 (1996) 121
16. Edelsbrunner H., and Mucke E.P. ACM Trans. Graph. 13 (1994) 43
17. Edelsbrunner H. Discrete Comput. Geom. 13 (1995) 415
18. Delaunay B. Izv. Akad. Nauk SSSR 7 (1934) 793
19. CGAL, Computational Geometry Algorithms Library, .
20. Watson J.D., and Crick F.H.C. Nature 171 (1953) 737
21. Deshpande N., et al. Nucleic Acids Res. 33 (2005) D233
22. Ghosh A., and Bansal M. Acta Crystallogr. D 59 (2003) 620
23. Luger K., Mader A.W., Richmond R.K., Sargent D.F., and Richmond T.J. Nature 389 (1997) 251
24. Bolshoy A., McNamara P., Harrington R., and Trifonov E. Proc. Natl. Acad. Sci. 88 (1991) 2312