Biofilm formation and proteolytic activities of Pseudoalteromonas bacteria that were isolated from fish farm sediments

Microbial Biotechnology

Volumn 2, Issue 3, 2009, Pages 361-369

  Iijima, Saori ^a   Washio, Kenji ^a   Okahara, Ryota ^b   Morikawa, Masaaki ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

METALLOPROTEINASE; PROTEINASE; RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BIOFILM; ENZYME SYNTHESIS; EXTRACELLULAR SPACE; HALOMONAS; NONHUMAN; NUCLEOTIDE SEQUENCE; PISCICULTURE; PROTEIN DEGRADATION; PSEUDOALTEROMONAS; SEDIMENT; VIBRIO; WATER QUALITY;

AMINO ACID SEQUENCE; ANIMALS; BACTERIAL PROTEINS; BASE SEQUENCE; BIOFILMS; FISHES; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PEPTIDE HYDROLASES; PHYLOGENY; PSEUDOALTEROMONAS;

BACTERIA (MICROORGANISMS); FORAMINIFERA; HALOMONAS; PISCES; PSEUDOALTEROMONAS; VIBRIO;

EID: 77950153332     PISSN: 17517907     EISSN: 17517915     Source Type: Journal    
DOI: 10.1111/j.1751-7915.2009.00097.x     Document Type: Article

References (32)

1. Chang, A.K., Park, J.W., Lee, E.H., and Lee, J.S. (2007) The N-terminal propeptide of Vibrio vulnificus extracellular metalloprotease is both an inhibitor of and a substrate for the enzyme. J Bacteriol 189: 6832-6838. (Pubitemid 47525427)
2. Chen, X.L., Sun, C.Y., Zhang, Y.Z., and Gao, P.J. (2002) Effects of different buffers on the thermostability and autolysis of a cold-adapted protease MCP-01. J Protein Chem 21: 523-527. (Pubitemid 36297249)
3. Chen, X.L., Zhang, Y.Z., Gao, P.J., and Luan, X.W. (2003) Two different proteases produced by a deep-sea psychrotrophic bacterial strain, Pseudoalteromonas sp. SM9913. Mar Biol 143: 989-993. (Pubitemid 37496729)
4. Chen, X.L., Xie, B.B., Lu, J.T., He, H.L., and Zhang, Y. (2007) A novel type of subtilase from the psychrotolerant bacterium Pseudoalteromonas sp. SM9913: catalytic and structural properties of deseasin MCP-01. Microbiology 153: 2116-2125. (Pubitemid 47074065)
5. Dang, H., and Lovell, C.R. (2000) Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes. Appl Environ Microbiol 66: 467-475. (Pubitemid 30082728)
6. Heussen, C., and Dowdle, E.B. (1980) Electrophoretic analysis of plasminogen activators in polyacrylamide gels containing sodium dodecyl sulfate and copolymerized substrates. Anal Biochem 102: 196-202. (Pubitemid 10099499)
7. Holmström, C., and Kjelleberg, S. (1999) Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiol Ecol 30: 285-293.
8. Häse, C.C., and Finkelstein, R.A. (1993) Bacterial extracellular zinc-containing metalloproteases. Microbiol Rev 57: 823-837.
9. Kohno, D., Sakiyama, Y., Lee, S.O., Takiguchi, N., Mitsutani, A., Kitaguchi, H., and Kato, J. (2007) Cloning and characterization of a gene encoding algicidal serine protease from Pseudoalteromonas sp. strain A28. J Environ Biotech 7: 99-102.
10. Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
11. Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
12. Lee, S.O., Kato, J., Takiguchi, N., Kuroda, A., Ikeda, T., Mitsutani, A., and Ohtake, H. (2000) Involvement of an extracellular protease in algicidal activity of the marine bacterium Pseudoalteromonas sp. strain A28. Appl Environ Microbiol 66: 4334-4339. (Pubitemid 30768526)
13. Lee, S.O., Kato, J., Nakashima, K., Kuroda, A., Ikeda, T., Takiguchi, N., and Ohtake, H. (2002) Cloning and characterization of extracellular metal protease gene of the algicidal marine bacterium Pseudoalteromonas sp. strain A28. Biosci Biotechnol Biochem 66: 1366-1369. (Pubitemid 39251267)
14. Lee, Y.K., Kwon, K.K., Cho, K.H., Kim, H.W., Park, J.H., and Lee, H.K. (2003) Culture and identification of bacteria from marine biofilms. J Microbiol 41: 183-188. (Pubitemid 37281858)
15. Macleod, R.A. (1965) The question of existence of specific marine bacteria. Bacteriol Rev 29: 9-23.
16. Maeda, M., Nogami, K., Kanematsu, M., and Hirayama, K. (1997) The concept of biological control methods in aquaculture. Hydrobiologia 358: 285-290. (Pubitemid 127714214)
17. Morikawa, M. (2006) Beneficial biofilm formation by industrial bacteria Bacillus subtilis and related species. J Biosci Bioeng 101: 1-8. (Pubitemid 44355020)
18. O'Toole, G., Kaplan, H.B., and Kolter, R. (2000) Biofilm formation as microbial development. Annu Rev Microbiol 54: 49-79.
19. O'Toole, G.A., and Kolter, R. (1998) Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signaling pathways: a genetic analysis. Mol Microbiol 28: 449-461. (Pubitemid 28218392)
20. Patel, P., Callow, M.E., Joint, I., and Callow, J.A. (2003) Specificity in the settlement - modifying response of bacterial biofilms towards zoospores of the marine alga Enteromorpha. Environ Microbiol 5: 338-349. (Pubitemid 36572796)
21. Qian, P.Y., Lau, S.C., Dahms, H.U., Dobretsov, S., and Harder, T. (2007) Marine biofilms as mediators of colonization by marine macroorganisms: implications for antifouling and aquaculture. Mar Biotechnol 9: 399-410. (Pubitemid 47492126)
22. van Rijn, J. (1996) The potential for integrated biological treatment systems in recirculating fish culture - a review. Aquaculture 139: 181-201. (Pubitemid 126652988)
23. Sambrook, J., and Russell, D.W. (2001) Molecular Cloning: A Laboratory Manual, 3rd edn. Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press.
24. Sánchez-Porro, C., Mellado, E., Bertoldo, C., Antranikian, G., and Ventosa, A. (2003) Screening and characterization of the protease CP1 produced by the moderately halophilic bacterium Pseudoalteromonas sp. strain CP76. Extremophiles 7: 221-228. (Pubitemid 40876347)
25. Takei, D., Washio, K., and Morikawa, M. (2008) Identification of alkane hydroxylase genes in Rhodococcus sp. strain TMP2 that degrades a branched alkane. Biotechnol Lett 30: 1447-1452.
26. Thakur, N.L., Jain, R., Natalio, F., Hamer, B., Thakur, A.N., and Müller, W.E. (2008) Marine molecular biology: an emerging field of biological sciences. Biotechnol Adv 26: 233-245.
27. Tubiash, H.S., Colwell, R.R., and Sakazaki, R. (1970) Marine vibrios associated with bacillary necrosis, a disease of larval and juvenile bivalve mollusks. J Bacteriol 103: 271-272.
28. Verschuere, L., Rombaut, G., Sorgeloos, P., and Verstraete, W. (2000) Probiotic bacteria as biological control agents in aquaculture. Microbiol Mol Biol 64: 655-671. (Pubitemid 32475925)
29. Wuertz, S., Okabe, and S., and Hausner, M. (2004) Microbial communities and their interactions in biofilm systems: an overview. Water Sci Technol, 49: 327-336. (Pubitemid 39117212)
30. Xiong, H., Song, L., Xu, Y., Tsoi, M.Y., Dobretsov, S., and Qian, P.Y. (2007) Characterization of proteolytic bacteria from the Aleutian deep-sea and their proteases. J Ind Microbiol Biotechnol 34: 63-71. (Pubitemid 44951532)
31. Yeats, C., Bentley, S., and Bateman, A. (2003) New knowledge from old: in silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 3: 1-20. (Pubitemid 38789578)
32. Yeats, C., Rawlings, N.D., and Bateman, A. (2004) The PepSY domain: a regulator of peptidase activity in the microbial environment?. Trends Biochem Sci 29: 169-172. (Pubitemid 38472020)