Fine mapping of a gene for low-tiller number, Ltn, in japonica rice (Oryza sativa L.) variety Aikawa 1

Theoretical and Applied Genetics

Volumn 120, Issue 6, 2010, Pages 1233-1240

  Fujita, Daisuke ^a   Ebron, Leodegario A ^a   Araki, Etsuko ^b   Kato, Hiroshi ^c   Khush, Gurdev S ^a   Sheehy, John E ^a   Lafarge, Tanguy ^a,e   Fukuta, Yoshimichi ^d   Kobayashi, Nobuya ^a,d  

^a INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^b NATIONAL AGRICULTURAL RESEARCH CENTER FOR WESTERN REGION   (Japan)

^c NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

^d CIRAD   (France)

^e JAPAN INTERNATIONAL RESEARCH CENTER FOR AGRICULTURAL SCIENCES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AGRONOMIC TRAITS; DNA MARKERS; GENOME SEQUENCES; GRAIN PRODUCTION; HIGH RESOLUTION; JAPONICA RICE; LINKAGE ANALYSIS; MARKER-ASSISTED SELECTION; MOLECULAR MAPPING; ORYZA SATIVA; SSR MARKERS; TILLER NUMBER;

DNA; GENES;

GENETIC ENGINEERING;

AGRICULTURE; ARTICLE; BASE PAIRING; CHROMOSOME MAP; CHROMOSOME SEGREGATION; CROSS BREEDING; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; INBREEDING; METHODOLOGY; PHENOTYPE; PLANT CHROMOSOME; PLANT GENE; QUANTITATIVE TRAIT; RICE;

AGRICULTURE; BASE PAIRING; CHROMOSOME MAPPING; CHROMOSOME SEGREGATION; CHROMOSOMES, PLANT; CROSSES, GENETIC; GENES, PLANT; GENETIC MARKERS; GENOTYPE; INBREEDING; LINKAGE (GENETICS); ORYZA SATIVA; PHENOTYPE; QUANTITATIVE TRAIT, HERITABLE;

JAPONICA; ORYZA SATIVA;

EID: 77950059105     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-009-1251-7     Document Type: Article

References (25)

1. Araki E, Ebron LA, Cuevas RP, Mercado-Escueta D, Khush GS, Sheehy JE, Kato H, Fukuta Y (2003) Identification of low tiller gene in rice cultivar Aikawa1. Breed Res 5(Suppl 1): 95.
2. Brondani C, Rangel PHN, Brondani RPV, Ferreira ME (2002) QTL mapping and introgression of yield-related traits from Oryza glumaepatula to cultivated rice (Oryza sativa) using microsatellite markers. Theor Appl Genet 104: 1192-1203.
3. Drenkard E, Richter BG, Rozen S, Stutius LM, Angell NA, Mindrinos M, Cho RJ, Oefner PJ, Davis RW, Ausubel FM (2000) A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis. Plant Physiol 124: 1483-1492.
4. Hayashi K, Hashimoto N, Daigen M, Ashikawa I (2004) Development of PCR-based SNP markers for rice blast resistance genes at the Piz locus. Theor Appl Genet 108: 1212-1220.
5. Hemamalini GS, Shashidhar HE, Hittalmani S (2000) Molecular marker assisted tagging of morphological and physiological traits under two contrasting moisture regimes at peak vegetative stage in rice (Oryza sativa L.). Euphytica 112: 69-78.
6. International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
7. Ishikawa S, Maekawa M, Arite T, Onishi K, Takamure I, Kyozuka J (2005) Suppression of tiller bud activity in tillering dwarf mutants of rice. Plant Cell Physiol 46: 79-86.
8. Ishimaru K, Yano M, Aoki N, Ono K, Hirose T, Lin SY, Monna L, Sasaki T, Ohsugi R (2001) Toward the mapping of physiological and agronomic characters on a rice function map: QTL analysis and comparison between QTLs and expressed sequence tags. Theor Appl Genet 102: 793-800.
9. Iwata N, Takamure I, Wu HK, Siddiq EA, Rutger JN (1995) List of genes for various traits (with chromosome and main literature). Rice Genet Newsl 12: 61-93.
10. Jiang H, Guo LB, Xue DW, Zeng DL, Zhang GH, Dong GJ, Gu MH, Qian Q (2006) Genetic analysis and gene-mapping of two reduced-culm-number mutants in rice. J Integr Plant Biol 48: 341-347.
11. Khush GS (1987) Rice breeding: past, present and future. J Genet 66: 195-216.
12. Khush GS (2000) New plant type of rice for increasing the genetic yield potential. In: Nanda JS (ed) Rice breeding and genetics. Science Publishers, Enfield (NH), pp 99-108.
13. Khush GS, Virk PS (2005) Selection criteria. In: IR varieties and their impact, International Rice Research Institute, Los Baños, Philippines, pp 6-15.
14. Kwok S, Kellogg DE, McKinney N, Spasic D, Goda L, Levenson C, Sninsky JJ (1990) Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucl Acids Res 18: 999-1005.
15. Lanceras JC, Pantuwan G, Jongdee B, Toojinda T (2004) Quantitative trait loci associated with drought tolerance at reproductive stage in rice. Plant Physiol 135: 384-399.
16. Li X, Qian Q, Fu Z, Wang Y, Xiong G, Zeng D, Wang X, Liu X, Teng S, Fujimoto H, Yuan M, Luo D, Han B, Li J (2003) Control of tillering in rice. Nature 422: 618-621.
17. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res 9: 199-207.
18. Miyamoto N, Goto Y, Matsui M, Ukai Y, Morita M, Nemoto K (2004) Quantitative trait loci for phyllochron and tillering in rice. Theor Appl Genet 109: 700-706.
19. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucl Acids Res 8: 4321-4325.
20. Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365-386.
21. Takamure I (1994) Genetic studies on several mutants related to morphological and physiological characters in rice. Mem Fac Agric Hokkaido Univ 19: 151-202.
22. Takamure I, Kinoshita T (1993) Genetic analysis of reduced culm number mutants indicated by gamma-ray irradiation in rice. Mem Fac Agric Hokkaido Univ 18: 447-454.
23. Xing YZ, Tan YF, Hua JP, Sun XL, Xu CG, Zhang Q (2002) Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice. Theor Appl Genet 105: 248-257.
24. Yan JQ, Zhu J, He CX, Benmoussa M, Wu P (1998) Analysis for the developmental behavior of tiller number in rice (Oryza sativa L.). Theor Appl Genet 97: 267-274.
25. Zou J, Chen Z, Zhang S, Zhang W, Jiang G, Zhao X, Zhai W, Pan X, Zhu L (2005) Characterizations and fine mapping of a mutant gene for high tillering and dwarf in rice (Oryza sativa L.). Planta 222: 604-612.