Principal component analysis of dynamic fluorescence diffuse optical tomography images

Optics Express

Volumn 18, Issue 6, 2010, Pages 6300-6314

  Liu, Xin ^a   Wang, Daifa ^a   Liu, Fei ^a   Bai, Jing ^a  

^a Tsinghua University   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; ANIMALS; DYNAMIC ANALYSIS; FLUORESCENCE; OPTICAL TOMOGRAPHY; TIME SERIES;

DRUG DISTRIBUTION; EXPERIMENT STUDY; FLUORESCENCE DIFFUSE OPTICAL TOMOGRAPHY; KINETIC BEHAVIOR; METABOLIC PROCESS; PRINCIPAL COMPONENTS; SMALL ANIMAL; SPATIAL PATTERNS;

PRINCIPAL COMPONENT ANALYSIS;

ALGORITHM; ARTICLE; COMPUTER ASSISTED DIAGNOSIS; FLUORESCENCE MICROSCOPY; IMAGE ENHANCEMENT; METHODOLOGY; OPTICAL TOMOGRAPHY; PRINCIPAL COMPONENT ANALYSIS;

ALGORITHMS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MICROSCOPY, FLUORESCENCE; PRINCIPAL COMPONENT ANALYSIS; TOMOGRAPHY, OPTICAL;

EID: 77949596130     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.18.006300     Document Type: Article

References (32)

1. V. Ntziachristos, J. Ripoll, L. V. Wang, and R. Weissleder, "Looking and listening to light: the evolution of whole-body photonic imaging," Nat. Biotechnol. 23(3), 313-320 (2005).
2. V. Ntziachristos, C. H. Tung, C. Bremer, and R. Weissleder, "Fluorescence molecular tomography resolves protease activity in vivo," Nat. Med. 8(7), 757-761 (2002).
3. J. Haller, D. Hyde, N. Deliolanls, R. de Kleine, M. Niedre, and V. Ntziachristos, "Visualization of pulmonary inflammation using noninvasive fluorescence molecular imaging," J. Appl. Physiol. 104(3), 795-802 (2008).
4. V. Ntziachristos, A. G. Yodh, M. Schnall, and B. Chance, "Concurrent MRI and diffuse optical, tomography of breast after indocyanine green enhancement," Proc. Natl. Acad. Sci. U.S.A. 97(6), 2767-2772 (2000).
5. X. Montet, V. Ntziachristos, J. Grimm, and R. Weissleder, "Tomographic fluorescence mapping of tumor targets," Cancer Res. 65(14), 6330-6336 (2005).
6. A. Corfu, R. Choe, T. Durduran, M. A. Rosen, M. Schweiger, S. R. Arridge, M. D. Schnall, and A. G. Yodh, "Three-dimensional in vivo fluorescence diffuse optical tomography of breast cancer in humans," Opt. Express 15(11), 6696-6716 (2007).
7. V. Ntziachristos, E. A. Schellenberger, J. Ripoll, D. Yessayan, E. Graves, A. Bogdanov, Jr., L. Josephson, and R. Weissleder, "Visualization of antitumor treatment by means of fluorescence molecular tomography with an annexin. V-Cy5.5 conjugate," Proc. Natl. Acad, Sci. U.S.A. 101(33), 12294-12299 (2004).
8. R. Weissleder, and V. Ntziachristos, "Shedding light onto live molecular targets," Nat. Med. 9(1), 123-128 (2003).
9. X. Michalet, F. F. Pinaud, L. A. Bentolila, J. M. Tsay, S. Doose, J. J. Li, G. Sundaresan, A. M. Wu, S. S. Gambhir, and S. Weiss, "Quantum dots for live cells, in vivo imaging, and diagnostics," Science 307(5709), 538-544 (2005).
10. G. Hu, J. Yao, and J. Bai, "Full-angle optical, imaging of near-infrared fluorescent probes implanted in small animals," Prog. Nat. Sci. 18(6), 707-711 (2008).
11. S. V. Patwardhan, S. R. Bloch, S. A. Achilefu, and J. P. Culver, "Time-dependent whole-body fluorescence tomography of probe bio-distributions in mice," Opt. Express 13(7), 2564-2577 (2005).
12. E. E. Graves, J. Ripoll, R. Weissleder, and V. Ntziachristos, "A submillimeter resolution fluorescence molecular imaging system for small animal imaging," Med. Phys. 30(5), 901-911. (2003).
13. A. Soubret, J. Ripoll, and V. Ntziachristos, "Accuracy of fluorescent tomography in the presence of heterogeneities: study of the normalized Bom ratio," IEEE Trans. Med. Imaging 24(10), 1377-1386 (2005).
14. X. Song, D. Wang, N. Chen, J. Bai, and H. Wang, "Reconstruction, for free-space fluorescence tomography using a novel hybrid adaptive finite element algorithm," Opt. Express 15(26), 18300-18317 (2007).
15. A. Joshi, W. Bangerth, and E. M. Sevick-Muraca, "Adaptive finite element based tomography for fluorescence optical imaging in tissue," Opt. Express 12(22), 5402-5417 (2004).
16. M. Schweiger, S. R. Arridge, M. Hiraoka, and D. T. Delpy, "The finite element method for the propagation of light in scattering media: boundary and source conditions," Med. Phys. 22(11), 1779-1792 (.1995).
17. E. M. C. Hillman, and A. Moore, "All-optical anatomical co-registration for molecular imaging of small animals using dynamic contrast," Nat. Photonics 1(9), 526-530 (2007).
18. S. Kawata, K. Sasaki, and S. Minami, "Component analysis of spatial and spectral, patterns in multispectral images. I. Basis," J. Opt. Soc. Am. A 4(11), 2101-2106 (1987).
19. P. Razifar, H. Engler, G. Blomquist, A. Ringheim, S. Estrada, B. Langström, and M. Bergström, "Principal component analysis with pre-normalization improves the signal-to-noise ratio and image quality in positron emission tomography studies of amyloid deposits in Alzheimer's disease," Phys. Med. Biol. 54(11), 3595-3612 (2009).
20. F. Pedersen, M. Bergströme, E. Bengtsson, and B. Långström, "Principal component analysis of dynamic positron emission tomography images," Eur. J. Nucl. Med. 21.(12), 1285-1292 (1994).
21. K. J. Friston, C. D. Frith, P. F. Liddle, and R. S. J. Frackowiak, "Functional connectivity: the principalcomponent analysis of large (PET) data sets," J. Cereb. Blood Flow Metab. 13(1), 5-14 (1993).
22. A. H. Andersen, D. M. Gash, and M. J. A vison, "Principal component analysis of the dynamic response measured by fMRI: a generalized linear systems framework," Magn. Reson. Imaging 17(6), 795-815 (1999).
23. C. G. Thomas, R. A. Harshman, and R. S. Menon, "Noise reduction in BOLD-based fMRI using component analysis," Neuroimage 17(3), 1521-1537 (2002).
24. B. Dogdas, D. Stout, A. F. Chatziioannou, and R. M. Leahy, "Digimouse: a 3D whole body mouse atlas from CT and cryosection data," Phys. Med. Biol, 52(3), 577-587 (2007).
25. D. Stout, P. Chow, R. Silverman, R. M. Leahy, X. Lewis, S. Gambhir, and A. Chatziioannou, "Creating a whole body digital mouse atlas with PET, CT and cryosection images," Mol, Imaging Biol. 4, S27 (2002).
26. A. Kak, and M. Slaney, Computerized Tomographic Imaging (New York: IEEE Press, 1987), ch. 7.
27. K. Esbensen, and P. Geladi, "Strategy of multivariate image analysis (MIA)," Chemom. Intel!. Lab. Syst. 7(1.-2), 67-86(1989).
28. G. Alexandrakis, F. R. Rannou, and A. F. Chatziioannou, "Tomographic bioluminescence imaging by use of a combined optical-PET (OPET) system: a computer simulation feasibility study," Phys. Med. Biol. 50(17), 4225-4241 (2005).
29. D. Wang, X. Liu, and J. Bai, "Analysis of fast full angle fluorescence diffuse optical tomography with beamforming illumination," Opt. Express 17(24), 21376-21395 (2009).
30. V. Saxena, M. Sadoqi, and J. Shao, "Polymeric nanoparticulate delivery system, for Indocyanine green: biodistribution in healthy mice," Int. J. Pharm. 308(1-2), 200-204 (2006).
31. H. Meyer, A. Garofalakis, G. Zacharakis, S. Psycharakis, C. Mamalaki, D. Kioussis, E. N. Economou, V. Ntziachristos, and J. Ripoll, "Noncontact optical imaging in mice with fall angular coverage and automatic surface extraction," Appl. Opt. 46(17), 3617-3627 (2007).
32. D. Wang, X. Liu, Y. Chen, and J. Bai, "A novel finite-element-based algorithm, for fluorescence molecular tomography of heterogeneous media," IEEE Trans. Inf. Technol. Biomed. 13(5), 766-773 (2009).