Quantitative observation of cyanobacteria and diatoms from space using PhytoDOAS on SCIAMACHY data

Biogeosciences

Volumn 6, Issue 5, 2009, Pages 751-764

  Bracher, A ^a,b   Vountas, M ^b   Dinter, T ^b   Burrows, J P ^b,c   Rottgers R ^d   Peeken, I ^a,e  

^a ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH   (Germany)

^b UNIVERSITY OF BREMEN   (Germany)

^c CENTRE FOR ECOLOGY AND HYDROLOGY   (United Kingdom)

^d INSTITUTE OF MATERIALS RESEARCH   (Germany)

^e UNIVERSITY OF BREMEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION; BIOGEOCHEMISTRY; BIOMASS ALLOCATION; CLIMATE CHANGE; CYANOBACTERIUM; DATA SET; DIATOM; DOMINANCE; LIGHT ATTENUATION; LIQUID CHROMATOGRAPHY; MARINE ECOSYSTEM; MODEL TEST; POPULATION DISTRIBUTION; QUANTITATIVE ANALYSIS; SATELLITE SENSOR; SCIAMACHY; SOLAR RADIATION; SPECTRAL RESOLUTION; SPECTROSCOPY; SPECTRUM;

BACILLARIOPHYTA; CYANOBACTERIA;

EID: 77949576024     PISSN: 17264170     EISSN: 17264189     Source Type: Journal    
DOI: 10.5194/bg-6-751-2009     Document Type: Article

References (64)

1. Aiken, J., Fishwick, J. R., Lavender, S., Barlow, R., Moore, G. F., Sessions, H., Bernard, S., Ras, J., and Hardman-Mountford, N. J.: Validation of MERIS reflectance and chlorophyll during the BENCAL cruise October 2002: preliminary validation of new demonstration products for phytoplankton functional types and photosynthetic parameters, Int. J. Remote Sensing, 28, 497-516, 2007.
2. Alvain, S., Moulin, C., Danndonneau, Y., and Breon, F. M.: Remote Sensing of phytoplankton groups on case 1 waters from global SeaWiFS imagery, Deep Sea Res. I, 52, 1989-2004, 2005.
3. Alvain, S., Moulin, C., Danndonneau, Y., and Loisel, H.: Seasonal distribution and succession of dominant phytoplankton groups in the global ocean: A satellite view, Global Biogeochem. Cy., 22, GB3001, doi:10.1029/2007GB003154, 2008.
4. Bartlett, J., Voss, K., Sathendranath, S., and Vodacek, A.: Raman scattering by pure water and seawater, Appl. Opt., 37, 3324-3332, 1998.
5. Behrenfeld, M. J. and Falkowski, P. G.: Photosynthetic rates derived from satellite-based chlorophyll concentrations, Limnol. Oceanogr, 42, 1-20, 1997.
6. Bezy, J. L., Delwart, S., and Rast, M.: MERIS - a new generation of ocean-color sensor onboard ENVISAT, ESA Bulletin, ESA Directorate of Applications Programmes, ESTEC, Noordwijk, The Netherlands, 103, 48-56, 2000.
7. Bogumil, K., Orphal, J., Homann, T., Voigt, S., Spietz, P., Fleischmann, O. C., Vogel, A., Hartmann, M., Bovensmann, H., Frerik, J., and Burrows, J. P.: Measurements of molecular absorption spectra with the SCIAMACHY Pre-Flight Model: Instrument characterization and reference data for atmospheric remote sensing in the 230-2380 nm region, J. Photochem. Photobiol. A, 157, 167-184, 2003.
8. Bovensmann, H., Burrows, J. P., Buchwitz, M., Frerick, J., Noël, S., Rozanov, V. V., Chance, K. V., and Goede, A. H. P.: SCIAMACHY - Mission Objectives and Measurement Modes, J. Atmos. Sci., 56, 125-150, 1999.
9. Bracher, A. U. and Tilzer, M. M.: Underwater light field and phytoplankton absorbance in different surface water masses of the Atlantic Sector of the Southern Ocean, Polar Biol., 24, 687-696, 2001.
10. Brown, C. W. and Yoder, J. A.: Coccolithophorid blooms in the global ocean, J. Geophys. Res., 99, 7467-7482, 1994.
11. Buesseler, K. O.: The decoupling of production and particulate export in the surface ocean, Global Biogeochem. Cy., 12, 297-310, 1998.
12. Burrows, J. P., Hölzle, E., Goede, A. P. H., Visser, H., and Fricke, W.: SCIAMACHY - Scanning Imaging Absorption Spectrometer for Atmospheric Chartography, Acta Astronaut, 35, 445-451, 1995.
13. Burrows, J. P., Richter A., Dehn, A., Deters, S., Himmelmann, S., Voigt, S., and Orphal, J.: Atmospheric remote-sensing reference data from GOME: Part1. Temperature-tempendent absorption cross-section of NO2 in the 231-794 nm range, J. Quant. Spectrosc. Rad. T., 60, 1025-1031, 1998.
14. Burrows, J. P., Weber, M., Buchwitz, B., Rozanov, V., Ladstätter- Weißenmayer A., Richter, A., DeBeek, R., Hoogen, R., Bramstedt, K., Eichmann K.-U., and Eisinger, M.: The Global Ozone Monitoring Experiment (GOME): Mission concept and first scientific results,. J. Atmos. Sci., 56, 151-175, 1999.
15. Ciotti, A. M., Lewis, M. R., and Cullen, J. J., Assessment of the relationships between dominant cell size in natural phytoplankton communities and spectral shape of the absorption coefficient, Limnol. Oceanogr., 47, 404-417, 2002.
16. Cota, G. F., Harrison, W. G., Platt, T., Sathyendranath, S., and Stuart, V.: Bio-optical properties of the Labrador Sea, J. Geophys. Res., 108(C7), 3228, doi:10.1029/2000JC000597, 2003.
17. Devred, E., Sathyendranath, S., Stuart, V., Maas, H., Ulloa, O., and Platt, T.: A two-component model of phytoplankton absorption in the open ocean: Theory and applications, J. Geophys. Res., 111, C03011, doi:10.1029/ 2005JC002880, 2006.
18. Greenblatt, G. D., Orlando, J. J., Burkholder, J. B., and Ravishankara, A. R.: Absorption measurements of oxygen between 330 and 1140 nm, J. Geophys. Res., 95, 18577-18582, 1990.
19. Gregg, W. W., Ginoux, P., Schopf, P. S., and Casey, N. W.: Phytoplankton and iron: validation of a global three-dimensional ocean biogeochemical model, Deep Sea Res. II, 50, 3147-3169, 2003.
20. Gregg, W. W. and Casey, N. W.: Modeling coccolithophores in the global oceans, Deep Sea Res. II, 54(5-7), 447-477, 2007.
21. Hirata, T., Aiken, J., Smyth, T. J., Hardman-Mountford, N., and Barlow, R. G.: An absorption model to derive phytoplankton size classes from satellite ocean colour. Remote Sensing of Environment 112, 3153-3159, 2008.
22. Hoepffner, N. and Sathyendranath, S.: Effect of pigment composition on absorption properties of phytoplankton populations: implications for production in the open ocean, Mar. Ecol. Prog. Ser., 73, 11-23, 1991.
23. Hoffmann, L. J., Peeken, I., Lochte, K., Assmy, P., and Veldhuis, M.: Different reactions of Southern Ocean phytoplankton size classes to iron fertilization, Limnol. Oceanogr., 51(3), 1217-1229, 2006.
24. Jeffrey, S. W. and Vesk M.: Introduction to marine phytoplankton and their pigment signatures, in: Phytoplankton pigments in oceanography: Guidelines to modern methods, UNESCO, Paris, France, 33-84, 1997.
25. Johnsen, G., Samset, O., Granskog, L., and Sakshaug, E.: In vivo absorption characteristics in 10 classes of bloom-forming phytoplankton: Taxonomic characteristics and responses to photoadaptation by means of discriminant and HPLC analysis, Mar. Ecol. Prog. Ser., 105(1-2), 149-157, 1994.
26. Kirk, J. T. O.: Light and Photosynthesis in Aquatic Ecosystems, Cambridge University Press, 509 pp., 1994.
27. Kokhanovsky, A. A., Schreier M., and Hoyningen-Huene, W.: The comparison of spectral top-of-atmosphere reflectances measured by AATSR, MERIA and SCIAMACHY onboard ENIVISAT, IEEE Geosci. Remote Sens. Lett., 5(1), 53-56, 2008.
28. La Roche, J. and Breithbarth, E.: Importance of the diazotrophs as a source of new nitrogen in the ocean, J. Sea Res., 53, 67-91, 2005.
29. Le Quere, C., Harrison, S. P., Prentice, C. I., Buitenhuis, E. T., Aumonts, O., Bopp, L., et al.: Ecosystem dynamics based on plankton functional types for global biogeochemistry models, Global Change Biol., 11, 2016-2040, doi:10.1111/j.1365- 2486.2005.01004.x, 2005.
30. Mackey, M. D., Mackey, D. J., Higgins, H. W., and Wright, S. W.: CHEMTAX - a program for estimating class abundances from chemical markers: Application to HPLC measurements of phytoplankton, Mar. Ecol. Prog. Ser., 14, 265-283, 1996.
31. Moran, X. A. G., Fernandez, E., and Perez, V.: Size fractionated primary production, bacterial production and net community production in subtropical and tropical domains of the oligotrophic NE Atlantic in autumn, Mar. Ecol. Prog. Ser., 274, 17-29, 2004.
32. Morel, A.: Optical modeling of the upper ocean in relation to its biogeneous matter content (Case I waters), J. Geophys. Res., 93, 10749-10768, 1988.
33. Morel, A.: Consequences of a Synechococcus bloom upon the optical properties of oceanic (Case 1) waters, Limnol. Oceanogr., 42(8), 1746-1754, 1997.
34. Morel, A., Gentili, B., Claustre, H., Babin, M., Bricaud, A., Ras, J., and Tieche F.: Optical Properties of the "clearest" natural waters, Limnol. Oceanogr., 52(1), 217-229, 2007.
35. Moore, K. J., Doney, S. C., and Lindsay, K.: Upper ocean ecosystem dynamics and iron cycling in aglobal three-dimensional model, Global Biogeochem. Cy., GB4028, doi:10.1029/2004GB002220, 2004. (Pubitemid 40440589)
36. Nelson, D. M., Treguer, P., Brzezinski, M. A., Leynaert, A., and Queguiner, B.: Production and dissolution of biogenic silica in the ocean: Revised global estimates, comparison with regional data and relationship to biogenic sedimentation, Global Biogeochem. Cy., 9, 359-372, 1995.
37. O'Reilly, J. E., Maritorena, S., Mitchell, B. G., Siegel, D. A., Carder, K. L., Garver, S. A., et al.: Ocean color algorithms for SeaWiFS, J. Geophys. Res., 103, 24937-24953, 1998.
38. O'Reilly, J. E., Maritorena, S., Siegel, D., O'Brien, M. C., Toole, D., et al.: Ocean color chlorophyll a algorithms for SeaWiFS, OC2, and OC4: Version 4, in: SeaWiFS Postlaunch Technical Report Series, edited by: Hooker, S. B. and Firestone, E. R., SeaWiFS Postlaunch Calibration and Validation Analyses, Part 3. NASA, Goddard Space Flight Center, Greenbelt, Maryland, USA, 11, 9-23, 2000.
39. Perner, D. and Platt, U.: Detection of nitrious acid in the atmosphere by differential optical absorption, Geophys. Res. Lett., 93, 917-920, 1979.
40. Pope, R. M. and Fry, E. S.: Absorption spectrum (380-700 nm) of pure water. II. Integrating cavity measurements, Appl. Opt., 36, 8710-8723, 1997.
41. Raitsos, D. E., Lavender, S. J., Maravelias, C. D., Haralambous, J., Richardson, A. J., and Reid, P. C.: Identifying four phytoplankton functional types from space: An ecological approach. Limnology and Oceanography, 53(2), 605-613, 2008.
42. Richter, A., Burrows, J. P., Nüß, H., Granier, C., and Niemeier, U.: Increase in tropospheric nitrogen dioxide over China observed from space, Nature, 437, 129-132, 2005.
43. Röttgers, R., Schönfeld, W., Kipp, P.-R., and Doerffer, R.: Practical test of a point-source integrating cavity absorption meter: the performance of different collector assemblies, Appl. Opt., 44(26), 5549-5560, 2005.
44. Sathyendranath, S., Lazzara, L., and Prieur, L.: Variations in spectral values of specific absorption of phytoplankton, Limnol. Oceanogr., 32, 403-415, 1987.
45. Sathyendranath, S., Watts, L., Devred, E., Platt, T., Caverhill, C., and Maass, H.: Discrimination of diatoms from other phytoplankton using ocean-colour data, Mar. Ecol. Prog. Ser., 272, 59-68, 2004.
46. Smetacek, V.: Role of sinking in diatom life-history cycles: ecological, evolutionary and geological significance, Mar. Biol., 84, 239-251, 1985.
47. Smetacek, V., Bathmann, U., Helmke, E. (eds.): The expeditions ANTARKTIS XXI/3-4-5The expeditions ANTARKTIS XXI/3- 4-5 of the research vessel "Polarstern" in 2004, Reports on polar and marine research, 500, 302 pp., 2005.
48. Stramski, D., Reynolds, R. A., Babin, M., Kaczmarek, S., Lewis, M. R., Röttgers, R., Sciandra, A., Stramska, M., Twardowski, M. S., Franz, B. A., and Claustre, H.: Relationships between the surface concentration of particulate organic carbon and optical properties in the eastern South Pacific and eastern Atlantic Oceans, Biogeosciences, 5, 171-201, 2008, http://www.biogeosciences. net/5/171/2008/.
49. Subramaniam, A., Brown, C. W., Hood, R. R., Carpenter, E. J., and Capone, D. G.: Detecting Trichodesmium blooms in SeaWiFS imagery, Deep Sea Res. II, 49, 107-121, 2002.
50. Tassan, S. and Ferrari, G. M.: An alternative approach to absorption measurements of aquatic particles retained on filters, Limnol. Oceanogr., 40, 1358-1368, 1995.
51. Treguer, P., Nelson, D. M., Van Bennekom, A. J., Demaster, D. J., Leynaert, A., and Queguiner, B.: The silica balance in the world ocean: A reestimate, Science, 268, 375-379, 1995.
52. Uitz, J., Claustre, H., Morel, A., and Hooker, S. B.: Vertical distribution of phytoplankton communities in open ocean: An assessment based on surface chlorophyll, J. Geophys. Res., 111, CO8005, doi:10.1029/2005JC003207, 2006. (Pubitemid 46316898)
53. Urbach, E., Robertson, D. L., and Chisholm, S.W.: Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiation, Nature, 355, 267-270, 1992.
54. Vasilkov, A. P., Joiner, J., Gleason, J., and Bhartia, P.: Ocean Raman scattering in satellite backscatter UV measurements, Geophys. Res. Lett., 29, 1837-1840, 2002.
55. Veldhuis, M. J.W. and Kraay, G.W.: Phytoplankton in the subtropical: towards a better assessment of biomass and composition, Deep-Sea Res. I, 51, 507-530, 2004.
56. Volkamer, R., Spietz, P., Burrows, J. P., and Platt, U.: Highresolution absorption cross-section of glyoxal in the UV-vis and IR spectral ranges, J. Photochem. Photobiol. A, 172, 35-46, 2005.
57. Vountas, M., Rozanov, V. V., and Burrows J. P.: Ring Effect: Impact of rotational Raman scattering on radiative transfer in Earth's Atmosphere, J. Quant. Spectr. Rad. T., 6, 943-961, 1998.
58. Vountas, M., Richter, A., Wittrock, F., and Burrows, J. P.: Inelastic scattering in ocean water and its impact on trace gas retrievals from satellite data, Atmos. Chem. Phys., 3, 1365-1375, 2003, http://www.atmos-chem-phys.net/3/ 1365/2003/.
59. Vountas, M., Dinter, T., Bracher, A., Burrows, J. P., and Sierk, B.: Spectral Studies of Ocean Water with Space-borne Sensor SCIAMACHY using Differential Optical Absorption Spectroscopy (DOAS), Ocean Sci., 3, 429-440, 2007, http://www.ocean-sci.net/3/429/2007/.
60. Wagner, T., Beirle, S., Deutschmann, T., Grzegorski, M., and Platt, U.: Satellite monitoring of different vegetation types by differential optical absorption spectroscopy (DOAS) in the red spectral range, Atmos. Chem. Phys., 7, 69-79, 2007, http://www.atmos-chem-phys.net/7/69/2007/.
61. Waterbury, J. W., Watson, S. W., Valois, F. W., and Franks, D. G.: Biological and Ecological Characterization of the marine unicellular Cyanobacterium Synechococcus, Canad. Bull. Fish. Aquat. Sci., 214, 71-120, 1986.
62. Wright, S. W., Thomas, D. P., Marchant, H. J., et al.: Analysis of phytoplankton of the Australian sector of the Southern Ocean: Comparisons of microscopy and size frequency data with interpretations of pigment HPLC data using the "CHEMTAX" matrix factorisation program, Mar. Ecol. Prog. Ser., 144, 285-298, 1996.
63. 2 in the subtropical North Pacific Ocean, Nature, 412, 635-638, 2001.
64. Zubkov, M. V., Fuchs, B. M., Tarran, G. A., Burkill, P. H., and Amann, R.: High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters, Appl. Environ. Microb., 69, 1299-1304, 2003.