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Volumn 27, Issue 2, 2010, Pages 170-182

Quantification of Microbial Communities in Forearc Sediment Basins off Sumatra

Author keywords

Deep biosphere; Marine sediments; Real time PCR

Indexed keywords

BACTERIUM; MARINE SEDIMENT; METHANOGENESIS; MICROBIAL COMMUNITY; POLYMERASE CHAIN REACTION; PROKARYOTE; QUANTITATIVE ANALYSIS; SEAFLOOR;

EID: 77949563943     PISSN: 01490451     EISSN: 15210529     Source Type: Journal    
DOI: 10.1080/01490450903456798     Document Type: Article
Times cited : (26)

References (54)
  • 2
    • 0344082224 scopus 로고    scopus 로고
    • Regulation of bacterial sulfate reduction and hydrogen sulfide fluxes in the central Namibian coastal upwelling zone
    • Brüchert V, Jørgensen BB, Neumann K, Riechmann D, Schlösser M, Schulz H. 2003. Regulation of bacterial sulfate reduction and hydrogen sulfide fluxes in the central Namibian coastal upwelling zone. Geochim Cosmochim Acta 67:4505-4518.
    • (2003) Geochim Cosmochim Acta , vol.67 , pp. 4505-4518
    • Brüchert, V.1    Jørgensen, B.B.2    Neumann, K.3    Riechmann, D.4    Schlösser, M.5    Schulz, H.6
  • 3
    • 84944816274 scopus 로고
    • Spectrophotometricdeterminationofhydrogensulfideinnatural waters
    • ClineJD
    • ClineJD.1969.Spectrophotometricdeterminationofhydrogensulfideinnatural waters. Limnol Oceanogr 14:454-458.
    • (1969) Limnol Oceanogr , vol.14 , pp. 454-458
  • 4
    • 44949231449 scopus 로고    scopus 로고
    • Estimates of biogenic methane production rates in deep marine sediments at Hydrate Ridge, Cascadia Margin
    • Colwell FS, Boyd S, Delwiche ME, Reed DW, Phelps TJ, Newby DT. 2008. Estimates of biogenic methane production rates in deep marine sediments at Hydrate Ridge, Cascadia Margin. Appl Environ Microbiol 74:3444-3452.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3444-3452
    • Colwell, F.S.1    Boyd, S.2    Delwiche, M.E.3    Reed, D.W.4    Phelps, T.J.5    Newby, D.T.6
  • 5
    • 0037189378 scopus 로고    scopus 로고
    • Ongoing modification of Mediterranean Pleistocene sapropels mediated by prokaryotes
    • Coolen MJL, Cypionka H, Sass AM, Sass H, Overmann J. 2002. Ongoing modification of Mediterranean Pleistocene sapropels mediated by prokaryotes. Science 296:2407-2410.
    • (2002) Science , vol.296 , pp. 2407-2410
    • Coolen, M.J.L.1    Cypionka, H.2    Sass, A.M.3    Sass, H.4    Overmann, J.5
  • 6
    • 33646365769 scopus 로고    scopus 로고
    • Sulfur and methane cycling during the Holocene in Ace Lake (Antarctica) revealed by lipid and DNA stratigraphy
    • Springer, P,Neretin Ln (ed.), Nato Science Series, Iv. Earth and Environmental Sciences-vol
    • Coolen MJL, Muyzer G, Schouten S, Volkman JK, Sinninghe Damstè JS. 2006. Sulfur and methane cycling during the Holocene in Ace Lake (Antarctica) revealed by lipid and DNA stratigraphy. In Past and Present Water Column Anoxia. Neretin LN (ed.), NATO Science Series, IV. Earth and Environmental Sciences-Vol. 64, Springer, P. 41-65.
    • (2006) Past and Present Water Column Anoxia , vol.64 , pp. 41-65
    • Coolen, M.J.L.1    Muyzer, G.2    Schouten, S.3    Volkman, J.K.4    Sinninghe Damstè, J.S.5
  • 7
    • 3242796796 scopus 로고    scopus 로고
    • Degradation and turnover of extracellular DNA in marine sediments: Ecological and methodological considerations
    • Dell'Anno A, Corinaldesi C. 2004. Degradation and turnover of extracellular DNA in marine sediments: Ecological and methodological considerations. Appl Environ Microbiol 70:4384-4386.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4384-4386
    • Dell'Anno, A.1    Corinaldesi, C.2
  • 8
    • 0031687910 scopus 로고    scopus 로고
    • Nucleic acid (DNA, RNA) quantification and RNA/DNA ratio determination in marine sediments: Comparison of spectrophotometric, fluorometric, and high-performance liquid chromatography methods and estimation of detrital DNA
    • Dell'Anno A, Fabiano M, Duineveld GCA, Kok A, Danovaro R. 1998. Nucleic acid (DNA, RNA) quantification and RNA/DNA ratio determination in marine sediments: Comparison of spectrophotometric, fluorometric, and high-performance liquid chromatography methods and estimation of detrital DNA. Appl Environ Microbiol 64:3238-3245.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3238-3245
    • Dell'Anno, A.1    Fabiano, M.2    Duineveld, G.C.A.3    Kok, A.4    Danovaro, R.5
  • 9
    • 0035159370 scopus 로고    scopus 로고
    • Evaluation of biological and physical protection against nuclease degradation of clay-bound plasmid DNA
    • Demanèche S, Jocteur-Monrozier L, Quiquampoix H, Simonet P. 2001. Evaluation of biological and physical protection against nuclease degradation of clay-bound plasmid DNA. Appl Environ Microbiol 67:293-299.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 293-299
    • Demanèche, S.1    Jocteur-Monrozier, L.2    Quiquampoix, H.3    Simonet, P.4
  • 11
    • 0037086196 scopus 로고    scopus 로고
    • Metabolic activity of subsurface life in deep-sea sediments
    • D'Hondt SL, Rutherford S, Spivack AJ. 2002. Metabolic activity of subsurface life in deep-sea sediments. Science 295:2067-2070.
    • (2002) Science , vol.295 , pp. 2067-2070
    • D'Hondt, S.L.1    Rutherford, S.2    Spivack, A.J.3
  • 17
    • 0042769125 scopus 로고    scopus 로고
    • Control of sulfate pore-water profiles by sedimentary events and the significance of anaerobic oxidation of methane for the burial of sulfur in marine sediments
    • Hensen C, Zabel M, Pfeiffer K, Schwenk T, Kasten S, Riedinger N, Schulz HD, Boetius A. 2003. Control of sulfate pore-water profiles by sedimentary events and the significance of anaerobic oxidation of methane for the burial of sulfur in marine sediments. Geochim Cosmochim Acta 67:2631-2647.
    • (2003) Geochim Cosmochim Acta , vol.67 , pp. 2631-2647
    • Hensen, C.1    Zabel, M.2    Pfeiffer, K.3    Schwenk, T.4    Kasten, S.5    Riedinger, N.6    Schulz, H.D.7    Boetius, A.8
  • 18
    • 0036249528 scopus 로고    scopus 로고
    • Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments
    • Holmes DE, Finneran KT, O'Neil RA, Lovley DR. 2002. Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments. Appl Environ Microbiol 68:2300-2306.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2300-2306
    • Holmes, D.E.1    Finneran, K.T.2    O'Neil, R.A.3    Lovley, D.R.4
  • 19
    • 77949546228 scopus 로고    scopus 로고
    • The Paleome: Letters from ancient earth
    • In Past and Present Water Column Anoxia. Neretin, L.N. (ed.)
    • Inagaki F, Nealson KH. 2006. The Paleome: Letters from ancient earth. In Past and Present Water Column Anoxia. Neretin, L.N. (ed.). NATO Science Series, IV. Earth and Environmental Sciences-Vol. 64, Springer, P 21-39.
    • (2006) Nato Science Series, Iv. Earth and Environmental Sciences , vol.64 , pp. 21-39
    • Inagaki, F.1    Nealson, K.H.2
  • 21
    • 18144401354 scopus 로고    scopus 로고
    • The Paleome: A sedimentary genetic record of past microbial communities
    • Inagaki F, Okada H, Tsapin AI, Nealson KH. 2005. The Paleome: A sedimentary genetic record of past microbial communities. Astrobiology 5: 141-153.
    • (2005) Astrobiology , vol.5 , pp. 141-153
    • Inagaki, F.1    Okada, H.2    Tsapin, A.I.3    Nealson, K.H.4
  • 23
    • 34548737680 scopus 로고    scopus 로고
    • Feast and famine-microbial life in the deep- sea bed
    • Jørgensen BB, Boetius A. 2007. Feast and famine-microbial life in the deep- sea bed. Nature Rev Microbiol 5:770-783.
    • (2007) Nature Rev Microbiol , vol.5 , pp. 770-783
    • Jørgensen, B.B.1    Boetius, A.2
  • 24
    • 33847336447 scopus 로고    scopus 로고
    • Leg 201 Synthesis: Controls on microbial communities in deeply buried sediments
    • Jørgensen BB, D'Hondt SL, Miller DJ. (eds.), Scientific Results Volume, [Online]. Available from World Wide Web
    • Jørgensen BB, D'Hondt SL, Miller DJ. 2006. Leg 201 Synthesis: Controls on microbial communities in deeply buried sediments. In Jørgensen BB, D'Hondt SL, Miller DJ. (eds.), Proceedings of the Ocean Drilling Program, Scientific Results Volume 201. 1-45 [Online]. Available from World Wide Web: .
    • (2006) Proceedings of The Ocean Drilling Program , vol.201 , pp. 1-45
    • Jørgensen, B.B.1    D'Hondt, S.L.2    Miller, D.J.3
  • 25
    • 0034961356 scopus 로고    scopus 로고
    • Sulfate reduction and anaerobic methane oxidation in Black Sea sediments
    • Jørgensen BB, Weber A, Zopfi J. 2001. Sulfate reduction and anaerobic methane oxidation in Black Sea sediments. Deep-Sea Res. I 48:2097-2120.
    • (2001) Deep-sea Res I , vol.48 , pp. 2097-2120
    • Jørgensen, B.B.1    Weber, A.2    Zopfi, J.3
  • 27
    • 0141447287 scopus 로고    scopus 로고
    • Activity, distribution, and diversity of sulfate reducers and other bacteria in sediments above gas hydrate (Cascadia margin, Oregon)
    • Knittel K, Boetius A, Lemke A, Eilers H, Lochte K, Pfannkuche O, Linke P, Amann R. 2003. Activity, distribution, and diversity of sulfate reducers and other bacteria in sediments above gas hydrate (Cascadia margin, Oregon). Geomicrobiol J 20:269-294.
    • (2003) Geomicrobiol J , vol.20 , pp. 269-294
    • Knittel, K.1    Boetius, A.2    Lemke, A.3    Eilers, H.4    Lochte, K.5    Pfannkuche, O.6    Linke, P.7    Amann, R.8
  • 28
    • 0032844705 scopus 로고    scopus 로고
    • Community size and metabolic rates of psychrophilic sulfate-reducing bacteria in arctic marine sediments
    • Knoblauch C, Jørgensen BB, Harder J. 1999. Community size and metabolic rates of psychrophilic sulfate-reducing bacteria in arctic marine sediments. Appl Environ Microbiol 65:4230-4233.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4230-4233
    • Knoblauch, C.1    Jørgensen, B.B.2    Harder, J.3
  • 29
    • 50049127889 scopus 로고    scopus 로고
    • Quantitative microbial community analysis of three different sulfidic mine tailings dumps generating acid mine drainage
    • Kock D, Schippers A. 2008. Quantitative microbial community analysis of three different sulfidic mine tailings dumps generating acid mine drainage. Appl Environ Microbiol 74:5211-5219.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 5211-5219
    • Kock, D.1    Schippers, A.2
  • 30
    • 65349096123 scopus 로고    scopus 로고
    • Sulfate-reducing bacteria in marine sediment (Aarhus Bay, Denmark): Abundance and diversity related to geochemical zonation
    • Leloup J, Fossing H, Kohls K, Holmkvist L, Borowski C, Jørgensen BB. 2009. Sulfate-reducing bacteria in marine sediment (Aarhus Bay, Denmark): abundance and diversity related to geochemical zonation. Environ Microbiol 11:1278-1291.
    • (2009) Environ Microbiol , vol.11 , pp. 1278-1291
    • Leloup, J.1    Fossing, H.2    Kohls, K.3    Holmkvist, L.4    Borowski, C.5    Jørgensen, B.B.6
  • 31
    • 33846033212 scopus 로고    scopus 로고
    • Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea
    • Leloup J, Loy A, Knab NJ, Borowski C, Wagner M, Jørgensen BB. 2007. Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea. Environ Microbiol 9:131-142.
    • (2007) Environ Microbiol , vol.9 , pp. 131-142
    • Leloup, J.1    Loy, A.2    Knab, N.J.3    Borowski, C.4    Wagner, M.5    Jørgensen, B.B.6
  • 32
    • 50049107012 scopus 로고    scopus 로고
    • Significant contribution of Archaea to extent biomass in marine subsurface sediments
    • Lipp JS, Morono Y, Inagaki F, Hinrichs KU. 2008. Significant contribution of Archaea to extent biomass in marine subsurface sediments. Nature 454:991-994.
    • (2008) Nature , vol.454 , pp. 991-994
    • Lipp, J.S.1    Morono, Y.2    Inagaki, F.3    Hinrichs, K.U.4
  • 33
    • 0344765523 scopus 로고    scopus 로고
    • Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization
    • Llobet-Brossa E, Rossello-Mora R, Amann R. 1998. Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization. Appl Environ Microbiol 64:2691-2696.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2691-2696
    • Llobet-Brossa, E.1    Rossello-Mora, R.2    Amann, R.3
  • 34
    • 20444440388 scopus 로고    scopus 로고
    • An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy
    • Lunau M, Lemke A, Walther K, Martens-Habbena W, Simon M. 2005. An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy. Environ Microbiol 7:961-968.
    • (2005) Environ Microbiol , vol.7 , pp. 961-968
    • Lunau, M.1    Lemke, A.2    Walther, K.3    Martens-Habbena, W.4    Simon, M.5
  • 35
    • 68249083098 scopus 로고    scopus 로고
    • Subseafloor microbial communities associated with rapid turbidite deposition in the Gulf of Mexico continental slope (IODP Expedition 308)
    • Nunoura T, Soffientino B, Blazejak A, Kakuta J, Oida H, Schippers A, Takai K. 2009. Subseafloor microbial communities associated with rapid turbidite deposition in the Gulf of Mexico continental slope (IODP Expedition 308). FEMS Microbiol. Ecol. 69:410-424.
    • (2009) Fems Microbiol. Ecol , vol.69 , pp. 410-424
    • Nunoura, T.1    Soffientino, B.2    Blazejak, A.3    Kakuta, J.4    Oida, H.5    Schippers, A.6    Takai, K.7
  • 36
    • 42149176196 scopus 로고    scopus 로고
    • Quantification mcrA by fluorescent PCR in methanogenic and methanotrophic microbial communities
    • Nunoura T, Oida H, Miyazaki J, Miyashita A, Imachi H, Takai K. 2008. Quantification mcrA by fluorescent PCR in methanogenic and methanotrophic microbial communities. FEMS Microbiol Ecol 64:240-247.
    • (2008) Fems Microbiol Ecol , vol.64 , pp. 240-247
    • Nunoura, T.1    Oida, H.2    Miyazaki, J.3    Miyashita, A.4    Imachi, H.5    Takai, K.6
  • 37
    • 0347794946 scopus 로고    scopus 로고
    • Recentstudiesonbacterialpopulations and processes in subseafloor sediments: A review
    • Parkes RJ, Cragg BA, Wellsbury P.2000.Recentstudiesonbacterialpopulations and processes in subseafloor sediments: a review. Hydrogeol J 8:11-28.
    • (2000) Hydrogeol J , vol.8 , pp. 11-28
    • Parkes, R.J.1    Cragg, B.A.2    Wellsbury, P.3
  • 39
    • 0035158607 scopus 로고    scopus 로고
    • Quantitative molecular analysis of the microbial community in marine Arctic sediments (Svalbard)
    • Ravenschlag K, Sahm, K, Amann R. 2001. Quantitative molecular analysis of the microbial community in marine Arctic sediments (Svalbard). Appl Environ Microbiol 67:387-395.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 387-395
    • Ravenschlag, K.1    Sahm, K.2    Amann, R.3
  • 40
    • 0033857193 scopus 로고    scopus 로고
    • Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine Arctic sediments
    • Ravenschlag K, Sahm K, Knoblauch C, Jørgensen BB, Amann R. 2000. Com- munity structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine Arctic sediments. Appl Environ Microbiol 66:3592-3602.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3592-3602
    • Ravenschlag, K.1    Sahm, K.2    Knoblauch, C.3    Jørgensen, B.B.4    Amann, R.5
  • 41
    • 0025804888 scopus 로고
    • Adsorption of plasmid DNA to mineral surfaces and protection against DNase I
    • Romanowski G, Lorenz MG, Wackernagel W. 1991. Adsorption of plasmid DNA to mineral surfaces and protection against DNase I. Appl Environ Microbiol 57:1057-1061.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1057-1061
    • Romanowski, G.1    Lorenz, M.G.2    Wackernagel, W.3
  • 42
    • 0033068882 scopus 로고    scopus 로고
    • Sulphate reduction and vertical distribution of sulphate-reducing bacteria quantified by rRNA slot- blot hybridization in a coastal marine sediment
    • Sahm K, MacGregor BJ, Jørgensen BB, Stahl DA. 1999. Sulphate reduction and vertical distribution of sulphate-reducing bacteria quantified by rRNA slot- blot hybridization in a coastal marine sediment. Environ Microbiol 1:65-74.
    • (1999) Environ Microbiol , vol.1 , pp. 65-74
    • Sahm, K.1    Macgregor, B.J.2    Jørgensen, B.B.3    Stahl, D.A.4
  • 43
    • 33745121530 scopus 로고    scopus 로고
    • Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR
    • Schippers A, Neretin LN. 2006. Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR. Environ Microbiol 8:1251-1260.
    • (2006) Environ Microbiol , vol.8 , pp. 1251-1260
    • Schippers, A.1    Neretin, L.N.2
  • 45
  • 46
    • 84892253756 scopus 로고    scopus 로고
    • Schulz HD, Zabel M (eds.), Springer
    • Schulz HD, Zabel M (eds.). 2006. Marine Geochemistry. Springer.
    • (2006) Marine Geochemistry
  • 47
    • 0028311162 scopus 로고
    • Early diagenetic processes, fluxes, and reaction rates in sediments of the South Atlantic
    • Schulz HD, Dahmke A, Schinzel U, Wallmann K, Zabel M. 1994. Early diagenetic processes, fluxes, and reaction rates in sediments of the South Atlantic. Geochim Cosmochim Acta 58:2041-2060.
    • (1994) Geochim Cosmochim Acta , vol.58 , pp. 2041-2060
    • Schulz, H.D.1    Dahmke, A.2    Schinzel, U.3    Wallmann, K.4    Zabel, M.5
  • 48
    • 85023884574 scopus 로고    scopus 로고
    • Microbial communities of deep marine subsurface sediments: Molecular and cultivation surveys
    • Teske AP. 2006. Microbial communities of deep marine subsurface sediments: molecular and cultivation surveys. Geomicrobiol J 23:357-368.
    • (2006) Geomicrobiol J , vol.23 , pp. 357-368
    • Teske, A.P.1
  • 49
    • 41149093627 scopus 로고    scopus 로고
    • Uncultured archaea in deep marine marine subsurface sediments: Have we caught them all?
    • Teske AP, Sørensen KB. 2008. Uncultured archaea in deep marine marine subsurface sediments: have we caught them all? ISME J 2: 3-18.
    • (2008) Isme J , vol.2 , pp. 3-18
    • Teske, A.P.1    Sørensen, K.B.2
  • 51
    • 0142091782 scopus 로고    scopus 로고
    • Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: A cautionary tale
    • Webster G, Newberry CJ, Fry JC, Weightman AJ. 2003. Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale. J Microbiol Meth 55:155-164.
    • (2003) J Microbiol Meth , vol.55 , pp. 155-164
    • Webster, G.1    Newberry, C.J.2    Fry, J.C.3    Weightman, A.J.4
  • 52
    • 0031736602 scopus 로고    scopus 로고
    • Utility of green fluorescent nucleic acid dyes and aluminium oxide membrane filters for rapid epifluorescence enumeration of soil and sediment bacteria
    • Weinbauer MG, Beckmann C, Höfle MG. 1998. Utility of green fluorescent nucleic acid dyes and aluminium oxide membrane filters for rapid epifluorescence enumeration of soil and sediment bacteria. Appl Environ Microbiol 64:5000-5003.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 5000-5003
    • Weinbauer, M.G.1    Beckmann, C.2    Höfle, M.G.3
  • 54
    • 33847763734 scopus 로고    scopus 로고
    • Methane and sulfate profiles within the subsurface of a tidal flat are reflected by the distribution of sulfate-reducing bacteria and methanogenic archaea
    • Wilms R, Sass H, Köpke B, Cypionka H, Engelen B. 2007. Methane and sulfate profiles within the subsurface of a tidal flat are reflected by the distribution of sulfate-reducing bacteria and methanogenic archaea. FEMS Microbiol Ecol 59:611-621.
    • (2007) Fems Microbiol Ecol , vol.59 , pp. 611-621
    • Wilms, R.1    Sass, H.2    Köpke, B.3    Cypionka, H.4    Engelen, B.5


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