메뉴 건너뛰기




Volumn 393, Issue 4, 2010, Pages 720-727

Comparative transcriptome analysis of differentially expressed genes in foxtail millet (Setaria italica L.) during dehydration stress

Author keywords

Dehydration stress; Gene expression; Quantitative real time PCR (qRT PCR); Relative Water Content (RWC); Reverse Northern (RN); Setaria italica; Suppression Subtractive Hybridization (SSH)

Indexed keywords

TRANSCRIPTOME;

EID: 77949487226     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2010.02.068     Document Type: Article
Times cited : (101)

References (41)
  • 1
    • 14644430438 scopus 로고    scopus 로고
    • Drought and salt tolerance in plants
    • Bartels D., and Sunkar R. Drought and salt tolerance in plants. Crit. Rev. Plant Sci. 24 (2005) 23-58
    • (2005) Crit. Rev. Plant Sci. , vol.24 , pp. 23-58
    • Bartels, D.1    Sunkar, R.2
  • 2
    • 0030970357 scopus 로고    scopus 로고
    • Reactive oxygen species and antioxidants: relationships in green cells
    • Alscher R.G., Donahue J.L., and Cramer C.L. Reactive oxygen species and antioxidants: relationships in green cells. Plant Physiol. 100 (1997) 224-233
    • (1997) Plant Physiol. , vol.100 , pp. 224-233
    • Alscher, R.G.1    Donahue, J.L.2    Cramer, C.L.3
  • 3
    • 3543014988 scopus 로고    scopus 로고
    • Long term transcript accumulation during the development of dehydration adaptation in Cicer arietinum
    • Boominathan P., Shukla R., Kumar A., et al. Long term transcript accumulation during the development of dehydration adaptation in Cicer arietinum. Plant Physiol. 135 (2004) 1-13
    • (2004) Plant Physiol. , vol.135 , pp. 1-13
    • Boominathan, P.1    Shukla, R.2    Kumar, A.3
  • 4
    • 34250017702 scopus 로고    scopus 로고
    • Construction and application of EST library from Setaria italica in response to dehydration stress
    • Zhang J., Liu T., Fu J., et al. Construction and application of EST library from Setaria italica in response to dehydration stress. Genomics 90 (2007) 121-131
    • (2007) Genomics , vol.90 , pp. 121-131
    • Zhang, J.1    Liu, T.2    Fu, J.3
  • 6
    • 0031935263 scopus 로고    scopus 로고
    • Comparative genetic maps of foxtail millet (Setaria italica) and rice (Oryza sativa)
    • Devos K.M., Wang Z.M., Beales C.J., Sasaki T., and Gale M.D. Comparative genetic maps of foxtail millet (Setaria italica) and rice (Oryza sativa). Theor. Appl. Genet. 96 (1998) 63-68
    • (1998) Theor. Appl. Genet. , vol.96 , pp. 63-68
    • Devos, K.M.1    Wang, Z.M.2    Beales, C.J.3    Sasaki, T.4    Gale, M.D.5
  • 7
    • 62349107421 scopus 로고    scopus 로고
    • cDNA-AFLP analysis reveals differential gene expression in response to salt stress in foxtail millet (Setaria italica L.)
    • Jayaraman A., Puranik S., Rai N.K., et al. cDNA-AFLP analysis reveals differential gene expression in response to salt stress in foxtail millet (Setaria italica L.). Mol. Biotechnol. 40 (2008) 241-251
    • (2008) Mol. Biotechnol. , vol.40 , pp. 241-251
    • Jayaraman, A.1    Puranik, S.2    Rai, N.K.3
  • 8
    • 0000926663 scopus 로고
    • Rapid estimates of relative water content
    • Smart R.E., and Bingham G.E. Rapid estimates of relative water content. Plant Physiol. 53 (1974) 258-260
    • (1974) Plant Physiol. , vol.53 , pp. 258-260
    • Smart, R.E.1    Bingham, G.E.2
  • 9
    • 0023654956 scopus 로고
    • Improved method for the isolation of RNA from plant tisues
    • Longeman J., Schell J., and Willmitzer L. Improved method for the isolation of RNA from plant tisues. Anal. Biochem. 163 (1987) 16-20
    • (1987) Anal. Biochem. , vol.163 , pp. 16-20
    • Longeman, J.1    Schell, J.2    Willmitzer, L.3
  • 11
    • 34548025846 scopus 로고    scopus 로고
    • Characterization of an 18, 166 EST dataset for cassava (Manihot esculenta Crantz) enriched for drought-responsive genes
    • Lokko Y., Anderson J.V., Rudd S., et al. Characterization of an 18, 166 EST dataset for cassava (Manihot esculenta Crantz) enriched for drought-responsive genes. Plant Cell Rep. 26 (2007) 1605-1618
    • (2007) Plant Cell Rep. , vol.26 , pp. 1605-1618
    • Lokko, Y.1    Anderson, J.V.2    Rudd, S.3
  • 12
    • 0036010936 scopus 로고    scopus 로고
    • Monitoring large-scale changes in transcript abundance in drought- and salt-stressed barley
    • Ozturk Z.N., Talaḿe V., Deyholos M., et al. Monitoring large-scale changes in transcript abundance in drought- and salt-stressed barley. Plant Mol. Biol. 48 (2002) 551-573
    • (2002) Plant Mol. Biol. , vol.48 , pp. 551-573
    • Ozturk, Z.N.1    Talaḿe, V.2    Deyholos, M.3
  • 13
    • 35748935840 scopus 로고    scopus 로고
    • Comparison of gene expression between upland and lowland rice cultivars under water stress using cDNA microarray
    • Wang H., Zhang H., Gao F., et al. Comparison of gene expression between upland and lowland rice cultivars under water stress using cDNA microarray. Theor. Appl. Genet. 115 (2007) 1109-1126
    • (2007) Theor. Appl. Genet. , vol.115 , pp. 1109-1126
    • Wang, H.1    Zhang, H.2    Gao, F.3
  • 14
    • 0036679053 scopus 로고    scopus 로고
    • Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
    • Seki M., Narusaka M., Ishida J., et al. Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J. 31 (2002) 279-292
    • (2002) Plant J. , vol.31 , pp. 279-292
    • Seki, M.1    Narusaka, M.2    Ishida, J.3
  • 15
    • 20044394177 scopus 로고    scopus 로고
    • Isolation and analysis of water stress induced genes in maize seedlings by subtractive PCR and cDNA macro array
    • Zheng J., Zhao J., Tao Y., et al. Isolation and analysis of water stress induced genes in maize seedlings by subtractive PCR and cDNA macro array. Plant Mol. Biol. 55 (2004) 807-823
    • (2004) Plant Mol. Biol. , vol.55 , pp. 807-823
    • Zheng, J.1    Zhao, J.2    Tao, Y.3
  • 16
    • 9144230726 scopus 로고    scopus 로고
    • Monitoring expression profiles of rice genes under cold, drought and high salinity stresses and abscisic acid application using cDNA microarray and RNA gel blot analyses
    • Rabbani M.A., Maruyama K., Abe H., et al. Monitoring expression profiles of rice genes under cold, drought and high salinity stresses and abscisic acid application using cDNA microarray and RNA gel blot analyses. Plant Physiol. 133 (2003) 1755-1767
    • (2003) Plant Physiol. , vol.133 , pp. 1755-1767
    • Rabbani, M.A.1    Maruyama, K.2    Abe, H.3
  • 17
    • 4944243432 scopus 로고    scopus 로고
    • A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway
    • Fujita M., Fujita Y., Maruyama K., et al. A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J. 39 (2004) 863-876
    • (2004) Plant J. , vol.39 , pp. 863-876
    • Fujita, M.1    Fujita, Y.2    Maruyama, K.3
  • 18
    • 19044378214 scopus 로고    scopus 로고
    • Monitoring the expression pattern of around 7000 Arabidopsis genes under ABA treatments using a full-length cDNA Microarray
    • Seki M., Ishida J., Narusaka M., et al. Monitoring the expression pattern of around 7000 Arabidopsis genes under ABA treatments using a full-length cDNA Microarray. Funct. Integ. Genomics 2 (2002) 282-291
    • (2002) Funct. Integ. Genomics , vol.2 , pp. 282-291
    • Seki, M.1    Ishida, J.2    Narusaka, M.3
  • 19
    • 47549112273 scopus 로고    scopus 로고
    • Identification of stress-induced genes from the drought tolerant semi-arid legume crop horsegram (Macrotyloma uniflorum (Lam.) Verdc.) through analysis of subtracted expressed sequence tags
    • Reddy P.C.O., Sairanganayakulu G., Thippeswamy M., et al. Identification of stress-induced genes from the drought tolerant semi-arid legume crop horsegram (Macrotyloma uniflorum (Lam.) Verdc.) through analysis of subtracted expressed sequence tags. Plant Sci. 175 (2008) 372-384
    • (2008) Plant Sci. , vol.175 , pp. 372-384
    • Reddy, P.C.O.1    Sairanganayakulu, G.2    Thippeswamy, M.3
  • 21
    • 35248860681 scopus 로고    scopus 로고
    • Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica)
    • Ray S., Agarwal P., Arora R., et al. Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica). Mol. Genet. Genomics 278 (2007) 493-505
    • (2007) Mol. Genet. Genomics , vol.278 , pp. 493-505
    • Ray, S.1    Agarwal, P.2    Arora, R.3
  • 22
    • 57649245624 scopus 로고    scopus 로고
    • Analysis of gene expression profiles under water stress in tolerant and sensitive sugarcane plants
    • Rodrigues F.A., De Laia M.L., and Zingaretti S.M. Analysis of gene expression profiles under water stress in tolerant and sensitive sugarcane plants. Plant Sci. 176 (2009) 286-302
    • (2009) Plant Sci. , vol.176 , pp. 286-302
    • Rodrigues, F.A.1    De Laia, M.L.2    Zingaretti, S.M.3
  • 23
    • 0031397805 scopus 로고    scopus 로고
    • Gene expression and signal transduction in water-stress response
    • Shinozaki K., and Yamaguchi-Shinozaki K. Gene expression and signal transduction in water-stress response. Plant Physiol. 115 (1997) 327-334
    • (1997) Plant Physiol. , vol.115 , pp. 327-334
    • Shinozaki, K.1    Yamaguchi-Shinozaki, K.2
  • 24
    • 0036290601 scopus 로고    scopus 로고
    • DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREB's, transcription factors involved in dehydration- and cold-inducible gene expression
    • Sakuma Y., Liu Q., Dubouzet J.G., et al. DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREB's, transcription factors involved in dehydration- and cold-inducible gene expression. Biochem. Biophys. Res. Commun. 290 (2002) 998-1009
    • (2002) Biochem. Biophys. Res. Commun. , vol.290 , pp. 998-1009
    • Sakuma, Y.1    Liu, Q.2    Dubouzet, J.G.3
  • 25
    • 33745477457 scopus 로고    scopus 로고
    • Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression
    • Sakuma Y., Maruyama K., Osakabe Y., et al. Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 18 (2006) 1292-1309
    • (2006) Plant Cell , vol.18 , pp. 1292-1309
    • Sakuma, Y.1    Maruyama, K.2    Osakabe, Y.3
  • 26
    • 0347930304 scopus 로고    scopus 로고
    • Molecular characterization of Brassica napus NAC domain transcriptional activators in response to biotic and abiotic stress
    • Hegedus D., Yu M., Baldwin D., et al. Molecular characterization of Brassica napus NAC domain transcriptional activators in response to biotic and abiotic stress. Plant Mol. Biol. 53 (2003) 383-397
    • (2003) Plant Mol. Biol. , vol.53 , pp. 383-397
    • Hegedus, D.1    Yu, M.2    Baldwin, D.3
  • 27
    • 33748364557 scopus 로고    scopus 로고
    • Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice
    • Hu H., Dai M., Yao J., et al. Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc. Natl. Acad. Sci. 103 (2006) 12987-12992
    • (2006) Proc. Natl. Acad. Sci. , vol.103 , pp. 12987-12992
    • Hu, H.1    Dai, M.2    Yao, J.3
  • 28
    • 0030300175 scopus 로고    scopus 로고
    • Ca2+-dependent protein kinases and stress signal transduction in plants
    • Sheen J. Ca2+-dependent protein kinases and stress signal transduction in plants. Science 274 (1996) 1900-1902
    • (1996) Science , vol.274 , pp. 1900-1902
    • Sheen, J.1
  • 29
    • 0035028609 scopus 로고    scopus 로고
    • Gene expression profiles during the initial phase of salt stress in rice
    • Kawasaki S., Borchert C., Deyholos M., et al. Gene expression profiles during the initial phase of salt stress in rice. Plant Cell 13 (2001) 889-905
    • (2001) Plant Cell , vol.13 , pp. 889-905
    • Kawasaki, S.1    Borchert, C.2    Deyholos, M.3
  • 30
    • 50949092777 scopus 로고    scopus 로고
    • Biotic and abiotic stress responses through calcium-dependent protein kinase (CDPK) signaling in wheat (Triticum aestivum L.)
    • Li A., Wang X., Leseberg C.H., Jia J., and Mao L. Biotic and abiotic stress responses through calcium-dependent protein kinase (CDPK) signaling in wheat (Triticum aestivum L.). Plant Signaling Behav. 3 (2008) 654-656
    • (2008) Plant Signaling Behav. , vol.3 , pp. 654-656
    • Li, A.1    Wang, X.2    Leseberg, C.H.3    Jia, J.4    Mao, L.5
  • 31
    • 0035212996 scopus 로고    scopus 로고
    • Nuclear pre mRNA splicing in plants
    • Reddy A.S.N. Nuclear pre mRNA splicing in plants. Crit. Rev. Plant Sci. 20 (2001) 523-572
    • (2001) Crit. Rev. Plant Sci. , vol.20 , pp. 523-572
    • Reddy, A.S.N.1
  • 32
    • 9444224969 scopus 로고    scopus 로고
    • Synaptotagmin gene content of the sequenced genomes
    • doi:10.1186/1471-2164-5-43
    • M. Craxton, Synaptotagmin gene content of the sequenced genomes. BMC Genomics 5 (2004) 43, doi:10.1186/1471-2164-5-43.
    • (2004) BMC Genomics , vol.5 , pp. 43
    • Craxton, M.1
  • 33
    • 62549127319 scopus 로고    scopus 로고
    • Calcium-dependent freezing tolerance in Arabidopsis involves membrane resealing via synaptotagmin SYT1
    • Yamazaki T., Kawamura Y., Minami A., and Uemura M. Calcium-dependent freezing tolerance in Arabidopsis involves membrane resealing via synaptotagmin SYT1. Plant Cell 20 (2008) 3389-3404
    • (2008) Plant Cell , vol.20 , pp. 3389-3404
    • Yamazaki, T.1    Kawamura, Y.2    Minami, A.3    Uemura, M.4
  • 34
    • 62549102934 scopus 로고    scopus 로고
    • Arabidopsis Synaptotagmin 1 is required for the maintenance of plasma membrane integrity and cell viability
    • Schapire A.L., Voigt B., Jasik J., et al. Arabidopsis Synaptotagmin 1 is required for the maintenance of plasma membrane integrity and cell viability. Plant Cell 20 (2008) 3374-3388
    • (2008) Plant Cell , vol.20 , pp. 3374-3388
    • Schapire, A.L.1    Voigt, B.2    Jasik, J.3
  • 35
    • 2342468702 scopus 로고    scopus 로고
    • The role of aquaporin RWC3 in drought avoidance in rice
    • Lian H., Yu X., Ye Q., et al. The role of aquaporin RWC3 in drought avoidance in rice. Plant Cell Physiol. 45 (2004) 481-489
    • (2004) Plant Cell Physiol. , vol.45 , pp. 481-489
    • Lian, H.1    Yu, X.2    Ye, Q.3
  • 36
    • 34447131471 scopus 로고    scopus 로고
    • Overexpression of a Panax ginseng tonoplast aquaporin alters salt tolerance, drought tolerance and cold acclimation ability in transgenic Arabidopsis plants
    • Peng Y., Lin W., Cai W., and Arora R. Overexpression of a Panax ginseng tonoplast aquaporin alters salt tolerance, drought tolerance and cold acclimation ability in transgenic Arabidopsis plants. Planta 226 (2007) 729-740
    • (2007) Planta , vol.226 , pp. 729-740
    • Peng, Y.1    Lin, W.2    Cai, W.3    Arora, R.4
  • 37
    • 57749106407 scopus 로고    scopus 로고
    • Comprehensive analysis of protein-protein interactions between Arabidopsis MAPKs and MAPK kinases help define potential MAPK signaling modules
    • Lee J.S., Huh K.W., Bhargava A., and Ellis B.E. Comprehensive analysis of protein-protein interactions between Arabidopsis MAPKs and MAPK kinases help define potential MAPK signaling modules. Plant Signaling Behav. 3 (2008) 1037-1041
    • (2008) Plant Signaling Behav. , vol.3 , pp. 1037-1041
    • Lee, J.S.1    Huh, K.W.2    Bhargava, A.3    Ellis, B.E.4
  • 38
    • 34250684884 scopus 로고    scopus 로고
    • Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA Microarray
    • Yamakawa H., Hirose T., Kuroda M., and Yamaguchi T. Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA Microarray. Plant Physiol. 144 (2007) 258-277
    • (2007) Plant Physiol. , vol.144 , pp. 258-277
    • Yamakawa, H.1    Hirose, T.2    Kuroda, M.3    Yamaguchi, T.4
  • 39
    • 10744228998 scopus 로고    scopus 로고
    • Genomics approach to abscisic acid- and Gibberellin-responsive genes in rice
    • Yazaki J., Kishimoto N., Nagata Y., et al. Genomics approach to abscisic acid- and Gibberellin-responsive genes in rice. DNA Res. 10 (2003) 249-261
    • (2003) DNA Res. , vol.10 , pp. 249-261
    • Yazaki, J.1    Kishimoto, N.2    Nagata, Y.3
  • 40
    • 34547421821 scopus 로고    scopus 로고
    • Scythe regulates apoptosis through modulating ubiquitin-mediated proteolysis of the Xenopus elongation factor XEF1AO
    • Minami R., Shimada M., Yokosawa H., and Kawahara H. Scythe regulates apoptosis through modulating ubiquitin-mediated proteolysis of the Xenopus elongation factor XEF1AO. Biochem. J. 405 (2007) 495-501
    • (2007) Biochem. J. , vol.405 , pp. 495-501
    • Minami, R.1    Shimada, M.2    Yokosawa, H.3    Kawahara, H.4
  • 41
    • 0032476659 scopus 로고    scopus 로고
    • Scythe: a novel reaper-binding apoptotic regulator
    • Thress K., Henzel W., Shillinglaw W., and Kornbluth S. Scythe: a novel reaper-binding apoptotic regulator. EMBO J. 17 (1998) 6135-6143
    • (1998) EMBO J. , vol.17 , pp. 6135-6143
    • Thress, K.1    Henzel, W.2    Shillinglaw, W.3    Kornbluth, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.