-
1
-
-
67650040559
-
Linked functions and reciprocal effects in hemoglobin: A second look
-
Wyman, J. (1964) Linked functions and reciprocal effects in hemoglobin: A second look. Adv. Protein Chem. 19, 223-286.
-
(1964)
Adv. Protein Chem.
, vol.19
, pp. 223-286
-
-
Wyman, J.1
-
2
-
-
0031776135
-
Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilbiria and processes: A practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts
-
2.Record,M.T.,Jr.,Zhang,W.T.,andAnderson,C.F.(1998) Analysisofeffectsofsaltsandunchargedsolutesonproteinandnucleicacid equilibriaandprocesses:Apracticalguide- recognizingandinterpretingpolyelectrolyteeffects,Hofmeistereffects, andosmoticeffectsofsalts,Adv.ProteinChem.51,281-353.(Pubitemid28252476)
-
(1998)
Advances in Protein Chemistry
, vol.51
, pp. 281-353
-
-
Record Jr., M.T.1
Zhang, W.2
Anderson, C.F.3
-
3
-
-
0031778590
-
Control of protein stability and reactions by weakly interacting cosolvents: The simplicity of the complicated
-
Timasheff, S. N. (1998) Control of protein stability and reactions by weakly interacting cosolvents: The simplicity of the complicated, Adv. Protein Chem. 51, 355-432.
-
(1998)
Adv. Protein Chem.
, vol.51
, pp. 355-432
-
-
Timasheff, S.N.1
-
4
-
-
0034681955
-
Vapor pressure osmometry studies of osmolyte-protein interactions: Implications for the action, of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro
-
Courtenay, E. S., Capp, M. W., Anderson, C. F., and Record, M. T., Jr. (2000) Vapor pressure osmometry studies of osmolyte-protein interactions: Implications for the action, of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro. Biochemistry 39, 4455-4471.
-
(2000)
Biochemistry
, vol.39
, pp. 4455-4471
-
-
Courtenay, E.S.1
Capp, M.W.2
Anderson, C.F.3
Record Jr., M.T.4
-
5
-
-
0006250682
-
Denaturation of proteins by urea and related substances
-
383-384
-
Hopkins, F. G. (1930) Denaturation of proteins by urea and related substances, Nature 126, 328-330, 383-384.
-
(1930)
Nature
, vol.126
, pp. 328-330
-
-
Hopkins, F.G.1
-
6
-
-
0014364651
-
Protein denaturation
-
Tanford, C. (1968) Protein denaturation. Adv. Protein Chem. 23, 121-282.
-
(1968)
Adv. Protein Chem.
, vol.23
, pp. 121-282
-
-
Tanford, C.1
-
7
-
-
8744225646
-
The exclusion of glycine betaine from anionic biopolymer surface: Why glycine betaine is an effective osmoprotectant but also a compatible solute
-
Felitsky,D. J., Cannon, J. G., Capp, M. W., Hong, J., Van Wynsberghe, A. W., Anderson, C. F., and Record, M. T., Jr. (2004) The exclusion of glycine betaine from anionic biopolymer surface: Why glycine betaine is an effective osmoprotectant but also a compatible solute. Biochemistry 43, 14732-14743.
-
(2004)
Biochemistry
, vol.43
, pp. 14732-14743
-
-
Felitsky, D.J.1
Cannon, J.G.2
Capp, M.W.3
Hong, J.4
Van Wynsberghe, A.W.5
Anderson, C.F.6
Record Jr., M.T.7
-
8
-
-
33745259953
-
Betaine and choline levels in plants and their relationship to nacl stress
-
Storey, R., and Jones, R. G. W. (1975) Betaine and choline levels in plants and their relationship to nacl stress. Plant Sci. Lett. 4, 161-168.
-
(1975)
Plant Sci. Lett.
, vol.4
, pp. 161-168
-
-
Storey, R.1
Jones, R.G.W.2
-
9
-
-
0020336190
-
Living with water-stress: Evolution of osmolyte systems
-
Yancey, P. H., Clark, M. E., Hand, S. C., Bowlus, R. D., and Somero, G. N. (1982) Living with water-stress: Evolution of osmolyte systems. Science 217, 1214-1222.
-
(1982)
Science
, vol.217
, pp. 1214-1222
-
-
Yancey, P.H.1
Clark, M.E.2
Hand, S.C.3
Bowlus, R.D.4
Somero, G.N.5
-
10
-
-
0028150954
-
Why do some organisms use a urea-methylamine mixture as osmolyte: Thermodynamic compensation of urea and trimethylamine n-oxide interactions with protein
-
Lin, T. Y., and Timasheff, S. N. (1994) Why do some organisms use a urea-methylamine mixture as osmolyte: Thermodynamic compensation of urea and trimethylamine n-oxide interactions with protein. Biochemistry 33, 12695-12701.
-
(1994)
Biochemistry
, vol.33
, pp. 12695-12701
-
-
Lin, T.Y.1
Timasheff, S.N.2
-
11
-
-
0001315798
-
Methylamine osmoregulatory solutes of elasmobranch fishes counteract urea inhibition of enzymes
-
Yancey, P. H., and Somero, G. N. (1980) Methylamine osmoregulatory solutes of elasmobranch fishes counteract urea inhibition of enzymes. J. Exp. Zool., 212, 205-213.
-
(1980)
J. Exp. Zool.
, vol.212
, pp. 205-213
-
-
Yancey, P.H.1
Somero, G.N.2
-
13
-
-
33749541104
-
Structural approach to solvent power of water for hydrocarbons: Urea as a structure breaker
-
Frank, H. S., and Franks, F. (1968) Structural approach to solvent power of water for hydrocarbons: Urea as a structure breaker. J. Chem. Phys. 48, 4746.
-
(1968)
J. Chem. Phys.
, vol.48
, pp. 4746
-
-
Frank, H.S.1
Franks, F.2
-
14
-
-
0032556206
-
Effect of the protein denaturants urea and guanidinium on water structure: A structural and thermodynamic study
-
DOI 10.1021/ja981529n
-
14. Vanzi, F., Madan, B., and Sharp, K. (1998) Effect of the protein dénaturants urea and guanidinium on water structure: A structural and thermodynamic study. J. Am. Chem. Soc. 120, 1074810753. (Pubitemid 28498822)
-
(1998)
Journal of the American Chemical Society
, vol.120
, Issue.41
, pp. 10748-10753
-
-
Vanzi, F.1
Madan, B.2
Sharp, K.3
-
15
-
-
0033720021
-
Molecular dynamics study of the urea/water mixture
-
DOI 10.1063/1.481566
-
15. Idrissi, A., Sokolic, F., and Perera, A. (2000) A molecular dynamics study of the urea/water mixture, J. Chem. Phys. 112, 9479-9488. (Pubitemid 30885949)
-
(2000)
Journal of Chemical Physics
, vol.112
, Issue.21
, pp. 9479-9488
-
-
Idrissi, A.1
Sokolic, F.2
Perera, A.3
-
16
-
-
0038370011
-
The molecular basis for the chemical denaturation of proteins by urea
-
Bennion, B. J., and Daggett, V. (2003) The molecular basis for the chemical denaturation of proteins by urea. Proc. Natl. Acad. Sci. U.S.A. 100, 5142-5147.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 5142-5147
-
-
Bennion, B.J.1
Daggett, V.2
-
17
-
-
0032080534
-
Urea effects on protein stability: Hydrogen bonding and the hydrophobic effect
-
DOI 10.1002/(SICI)1097-0134(19980501)31:2<107::AID-PROT1>3.0.CO;2-J
-
17. Zou, Q., Habermann-Rottinghaus, S. M., and Murphy, K, P. (1998) Urea effects on protein stability: Hydrogen bonding and the hydrophobic effect, Proteins: Struct., Fund., Genet. 31, 107-115. (Pubitemid 28198703)
-
(1998)
Proteins: Structure, Function and Genetics
, vol.31
, Issue.2
, pp. 107-115
-
-
Zou, Q.1
Habermann-Rottinghaus, S.M.2
Murphy, K.P.3
-
18
-
-
0037343333
-
The dominant interaction between peptide and urea is electrostatic in nature: A molecular dynamics simulation study
-
DOI 10.1002/bip.10290
-
18. Tobi, D., Elber, R., and Thirumalai, D. (2003) The dominant interaction between peptide and urea is electrostaticin nature: A molecular dynamics simulation study, Biopolymers 68, 359-369. (Pubitemid 36342872)
-
(2003)
Biopolymers
, vol.68
, Issue.3
, pp. 359-369
-
-
Tobi, D.1
Elber, R.2
Thirumalai, D.3
-
19
-
-
62449341938
-
Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group
-
Lim, W. K., Rosgen, J., and Englander, S. W. (2009) Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group. Proc. Natl. Acad. Sci. U.S.A. 106, 2595-2600.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 2595-2600
-
-
Lim, W.K.1
Rosgen, J.2
Englander, S.W.3
-
20
-
-
34547534081
-
The influence of urea and trimethylamine-N-oxide on hydrophobic interactions
-
DOI 10.1021/jp0733668
-
20. Paul, S., and Patey, G. N. (2007) The influence of urea and trimethylamine-n-oxide on hydrophobic interactions. J. Phys. Chem. B 111, 7932-7933. (Pubitemid 47184362)
-
(2007)
Journal of Physical Chemistry B
, vol.111
, Issue.28
, pp. 7932-7933
-
-
Paul, S.1
Patey, G.N.2
-
21
-
-
55949131241
-
Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding
-
Hua, L., Zhou, R. H., Thirumalai, D., and Berne, B. J. (2008) Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding, Propc. Natl. Acad. Sci. U.S.A. 105, 16928-16933.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 16928-16933
-
-
Hua, L.1
Zhou, R.H.2
Thirumalai, D.3
Berne, B.J.4
-
22
-
-
63149153986
-
Urea's action on hydrophobic interactions
-
Zangi, R., Zhou, R. H., and Berne, B. J. (2009) Urea's action on hydrophobic interactions. J. Am. Chem. Soc. 131, 1535-1541.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 1535-1541
-
-
Zangi, R.1
Zhou, R.H.2
Berne, B.J.3
-
23
-
-
0026630495
-
Linkage between ligandbinding and control, of tubulin conformation
-
Shearwin, K. E., and Timasheff, S. N. (1992) Linkage between ligandbinding and control, of tubulin conformation, Biochemistry 31, 8080-8089.
-
(1992)
Biochemistry
, vol.31
, pp. 8080-8089
-
-
Shearwin, K.E.1
Timasheff, S.N.2
-
24
-
-
0028962012
-
Interpretation of preferential interaction coefficients of nonelectrolytes and of electrolyte ions in terms of a 2-domain model
-
Record, M. T., Jr., and Anderson, C. F. (1995) Interpretation of preferential interaction coefficients of nonelectrolytes and of electrolyte ions in terms of a 2-domain model, Biophys. J. 68, 786-794.
-
(1995)
Biophys. J.
, vol.68
, pp. 786-794
-
-
Record Jr., M.T.1
Anderson, C.F.2
-
25
-
-
34548270876
-
Ureaamide preferential interactions in water: Quantitative comparison of model compound data with biopolymer results using water accessible surface areas
-
Cannon, J. G., Anderson, C. F., and Record, M. T., Jr. (2007) Ureaamide preferential interactions in water: Quantitative comparison of model compound data with biopolymer results using water accessible surface areas. J. Phys. Chem. B 111, 9675-9685.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 9675-9685
-
-
Cannon, J.G.1
Anderson, C.F.2
Record Jr., M.T.3
-
26
-
-
29344437812
-
Use of urea and glycine betaine to quantify coupled folding and probe the burial of DN A phosphates in lac repressor-lac operator bindings
-
Hong, J., Capp, M. W., Saecker, R. M., and Record, M. T., Jr. (2005) Use of urea and glycine betaine to quantify coupled folding and probe the burial of DN A phosphates in lac repressor-lac operator bindings. Biochemistry 44, 16896-16911.
-
(2005)
Biochemistry
, vol.44
, pp. 16896-16911
-
-
Hong, J.1
Capp, M.W.2
Saecker, R.M.3
Record Jr., M.T.4
-
27
-
-
70350513011
-
Interactions of glycine betaine with molecular surfaces in water: Thermodynamics, structural interpretation and prediction of m-values
-
Capp, M. W., Pegram, L. M., Saecker, R. M., Kratz, M., Riccardi, D., Wendorff, T., Cannon, J. G., and Record, M. T., Jr. (2009) Interactions of glycine betaine with molecular surfaces in water: Thermodynamics, structural interpretation and prediction of m-values. Biochemistry 48, 10372-10379.
-
(2009)
Biochemistry
, vol.48
, pp. 10372-10379
-
-
Capp, M.W.1
Pegram, L.M.2
Saecker, R.M.3
Kratz, M.4
Riccardi, D.5
Wendorff, T.6
Cannon, J.G.7
Record Jr., M.T.8
-
28
-
-
0033134665
-
Structural details of urea binding to barnase: A molecular dynamics analysis
-
DOI 10.1016/S0969-2126(99)80064-1
-
28. Caflisch, A., and Karplus, M. (1999) Structural details of urea binding to barnase: A molecular dynamics analysis. Struct. Folding Des. 7, 477-488. (Pubitemid 29230482)
-
(1999)
Structure
, vol.7
, Issue.5
, pp. 477-488
-
-
Caflisch, A.1
Karplus, M.2
-
29
-
-
0346936517
-
Proteins in mixed solvents: A molecular-level perspective
-
Baynes, B. M., and Trout, B. L. (2003) Proteins in mixed solvents: A molecular-level perspective. J. Phys. Chem. B107, 14058-14067.
-
(2003)
J. Phys. Chem.
, vol.B107
, pp. 14058-14067
-
-
Baynes, B.M.1
Trout, B.L.2
-
30
-
-
10444273367
-
Cosolvent interactions with biomolecules: Relating computer simulation data to experimental thermodynamic data
-
Smith, P. E. (2004) Cosolvent interactions with biomolecules: Relating computer simulation data to experimental thermodynamic data. J. Phys. Chem. B 108, 18716-18724.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 18716-18724
-
-
Smith, P.E.1
-
31
-
-
39149104991
-
Recent applications of Kirkwood-Buff theory to biological systems
-
Pierce, V., Kang, M., Aburi, M., Weerasinghe, S., and Smith, P. E. (2008) Recent applications of Kirkwood-Buff theory to biological systems. Cell Biochem. Biophys. 50, 1-22.
-
(2008)
Cell Biochem. Biophys.
, vol.50
, pp. 1-22
-
-
Pierce, V.1
Kang, M.2
Aburi, M.3
Weerasinghe, S.4
Smith, P.E.5
-
32
-
-
34249278137
-
Preferential interaction parameters in biological systems by Kirkwood-Buff theory and computer simulation
-
DOI 10.1016/j.fluid.2006.11.003, PII S0378381206004754, 16th Symposium on Thermophysical Properties
-
32. Kang, M., and Smith, P. E. (2007) Preferential interaction parameters in biological systems by Kirkwood-Buff theory and computer simulation, Fluid Phase Equilib. 256, 14-19. (Pubitemid 46818799)
-
(2007)
Fluid Phase Equilibria
, vol.256
, Issue.1-2
, pp. 14-19
-
-
Kang, M.1
Smith, P.E.2
-
33
-
-
0037997632
-
A Kirkwood-Buff derived force field for mixtures of urea and water
-
DOI 10.1021/jp022049s
-
33. Weerasinghe, S., and Smith, P. E. (2003) A Kirkwood-Buff derived force field for sodium chloride in water, J. Chem. Phys. 119, 1134211349. (Pubitemid 43677182)
-
(2003)
Journal of Physical Chemistry B
, vol.107
, Issue.16
, pp. 3891-3898
-
-
Weerasinghe, S.1
Smith, P.E.2
-
34
-
-
0037997632
-
A Kirkwood-Buff derived force field for mixtures of urea and water
-
DOI 10.1021/jp022049s
-
34. Weerasinghe, S., and Smith, P. E. (2003) Kirkwood-Buff derived force field for mixtures of acetone and water, J. Chem. Phys. 118, 10663-10670. (Pubitemid 43677182)
-
(2003)
Journal of Physical Chemistry B
, vol.107
, Issue.16
, pp. 3891-3898
-
-
Weerasinghe, S.1
Smith, P.E.2
-
35
-
-
4043160479
-
A Kirkwood-Buff derived force.field for the simulation of aqueous guanidinium chloride solutions
-
Weerasinghe, S., and Smith, P. E. (2004) A Kirkwood-Buff derived force .field for the simulation of aqueous guanidinium chloride solutions, J. Chem. Phys. 121, 2180-2186.
-
(2004)
J. Chem. Phys.
, vol.121
, pp. 2180-2186
-
-
Weerasinghe, S.1
Smith, P.E.2
-
36
-
-
23844511595
-
A Kirkwood-Buff derived force field for methanol and aqueous methanol solutions
-
DOI 10.1021/jp051773i
-
36. Weerasinghe, S., and Smith, P. E. (2005) A Kirkwood-Buff derived force field for methanol and aqueous methanol solutions. J. Phys. Chem. B 109, 15080-15086. (Pubitemid 41173732)
-
(2005)
Journal of Physical Chemistry B
, vol.109
, Issue.31
, pp. 15080-15086
-
-
Weerasinghe, S.1
Smith, P.E.2
-
37
-
-
33748538013
-
A Kirkwood-Buff derived force field for amides
-
DOI 10.1002/jcc.20441
-
37. Kang, M., and Smith, P. E. (2006) A Kirkwood-Buff derived force field for amides, J. Comput. Chem. 27, 1477-1485. (Pubitemid 44366223)
-
(2006)
Journal of Computational Chemistry
, vol.27
, Issue.13
, pp. 1477-1485
-
-
Kang, M.1
Smith, P.E.2
-
38
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
38.MacKerell,A.D.,Bashford,D.,Bellott,M.,Dunbrack,R.L.,Evanseck,J.D., Field,M.J.,Fischer,S.,Gao,J.,Guo,H.,Ha,S.,Joseph-McCarthy,D.,Kuchnir,L.,Kuczera, K.,Lau,F.T.K.,Miattos,C.,Michnick,S.,Ngo,T.,Nguyen,D.T.,Prodhom,B.,Reiher,W.E., Roux,B.,Schlenkrich,M.,Smith,J.C.,Stote,R.,Straub,J.,Watanabe,M., Wiorkiewicz-Kuczera,J.,Yin,D.,andKarplus,M.(1998)All- atomempiricalpotentialformolecularmodelinganddynamicsstudiesofproteins. ¿Jhys.Chem.B102,35863616.(Pubitemid128576688)
-
(1998)
Journal of Physical Chemistry B
, vol.102
, Issue.18
, pp. 3586-3616
-
-
MacKerell Jr., A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack Jr., R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-McCarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher III, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
39
-
-
84986512474
-
Charmm: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S., and Karplus, M. (1983) Charmm: A program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 4,187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
40
-
-
0004016501
-
Comparison of simple potential, functions for simulating liquid water
-
Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., and Klein, M. L. (1983) Comparison of simple potential, functions for simulating liquid water. J. Chem. Phys. 79, 926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
41
-
-
84986534166
-
New spherical-cutoff methods for long-range forces in macromolecular simulation
-
Steinbach, P. J., and Brooks, B. R. (1994) New spherical-cutoff methods for long-range forces in macromolecular simulation. J. Comput. Chem. 15, 667-683.
-
(1994)
J. Comput. Chem.
, vol.15
, pp. 667-683
-
-
Steinbach, P.J.1
Brooks, B.R.2
-
42
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann, U., Perera, L., Berkowitz, M. L., Darden, T., Lee, H., and Pedersen, L. G. (1995) A smooth particle mesh Ewald method. J. Chem. Phys. 103, 8577-8593.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
43
-
-
34547809547
-
A unified formulation of the constant temperature molecular-dynamics methods
-
Nose, S. (1984) A unified formulation of the constant temperature molecular-dynamics methods, J. Chem. Phys. 81, 511-519.
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 511-519
-
-
Nose, S.1
-
44
-
-
0001538909
-
Canonical dynamics: Equilibrium phase-space distributions
-
Hoover, W. G. (1985) Canonical dynamics: Equilibrium phase-space distributions. Phys. Rev. A 31, 1695-1697.
-
(1985)
Phys. Rev. A
, vol.31
, pp. 1695-1697
-
-
Hoover, W.G.1
-
45
-
-
36749107785
-
Molecular-dynamics simulations at constant pressure and/or temperature
-
Andersen, H. C. (1980) Molecular-dynamics simulations at constant pressure and/or temperature, J. Chem. Phys. 72, 2384-2393.
-
(1980)
J. Chem. Phys.
, vol.72
, pp. 2384-2393
-
-
Andersen, H.C.1
-
46
-
-
36449007836
-
Constant-pressure molecular-dynamics simulation: The Langevin piston method
-
Feller, S. E., Zhang, Y. H., Pastor, R. W., and Brooks, B. R. (1995) Constant-pressure molecular-dynamics simulation: The Langevin piston method, J. Chem. Phys. 103, 4613-4621.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 4613-4621
-
-
Feller, S.E.1
Zhang, Y.H.2
Pastor, R.W.3
Brooks, B.R.4
-
47
-
-
33646940952
-
Numerical integration of Cartesian equations of motion of a system, with, constraints: Molecular-dynamics of n-alkanes
-
Ryckaert, J. P., Ciccotti, G., and Berendsen, H. J. C. (1977) Numerical integration of Cartesian equations of motion of a system, with, constraints: Molecular-dynamics of n-alkanes. J. Comput. Phys. 23, 327-341.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
48
-
-
33746429637
-
Effects of temperature and salt concentration on the structural stability of human lymphotactin: Insights from molecular simulations
-
DOI 10.1021/ja061620o
-
48. Formaneck, M. S., Ma, L., and Cui, Q. (2006) Effects of temperature and salt concentration on the structural stability of human iymphotactin: Insights from molecular simulations. J. Am. Chem. Soc. 128, 9506-9517. (Pubitemid 44121425)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.29
, pp. 9506-9517
-
-
Formaneck, M.S.1
Ma, L.2
Cui, Q.3
-
49
-
-
33845275088
-
The temperature dependence of salt - Protein association is sequence specific
-
DOI 10.1021/bi0613067
-
49. Ma, L., and Cui, Q. (2006) The temperature dependence of saltprotein association is sequence specific, Biochemistry 45, 1446614472. (Pubitemid 44865201)
-
(2006)
Biochemistry
, vol.45
, Issue.48
, pp. 14466-14472
-
-
Ma, L.1
Cui, Q.2
-
50
-
-
70349099268
-
Molecular computations of preferential interaction coefficients of proteins
-
Shukla, D., Shinde, C., and Trout, B. L. (2009) Molecular computations of preferential interaction coefficients of proteins. J. Phys. Chem. B 113, 12546-12554.
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 12546-12554
-
-
Shukla, D.1
Shinde, C.2
Trout, B.L.3
-
51
-
-
33748545144
-
Influence of polarization functions on molecular-orbital hydrogenation energies
-
Harihara, P. C, and Pople, J. A. (1973) Influence of polarization functions on molecular-orbital hydrogenation energies. Theor. Chim. Acta 28, 213-222.
-
(1973)
Theor. Chim. Acta
, vol.28
, pp. 213-222
-
-
Harihara, P.C.1
Pople, J.A.2
-
52
-
-
0038626673
-
-
revision. C.02, Gaussian, Inc., Wallingford, CT
-
Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Montgomery, J. A., Jr., Vreven, T., Kudin, K, N., Burant, J. C., Millam, J. M., Iyengar, S. S., Tomasi, J., Barone, V., Mennucci, B., Cossi, M., Scalmani, G., Rega, N., Petersson, G. A., Nakatsuji, H., Hada, M., Ehara, M., Toyota, K., Fukuda, R., Hasegawa, J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Klene, M., Li, X., Knox, J. E., Hratchian, H. P., Cross, J. B., Bakken, V., Adamo, C., Jaramillo, J., Gomperts, R., Stratmann, R. E., Yazyev, O., Austin, A. J., Cammi, R., Pomelli, C., Ochterski, J. W., Ayala, P. Y., Morokuma, K. Voth, G. A., Salvador, P., Dannenberg, J. J., Zakrzewski, V. G., Dapprich, S., Daniels, A. D., Strain, M. C., Farkas, O., Malick, D. K., Rabuck, A. D., Raghavachari, K., Foresman, J. B., Ortiz, J. V., Cui, Q., Baboul, A. G., Clifford, S., Cioslowski, J., Stefanov, B. B., Liu, G., Liashenko, A., Piskorz, P., Komaromi, L, Martin, R. L., Fox, D. J., Keith, T., Al-Laham, M. A., Peng, C. Y., Nanayakkara, A., Challacombe, M., Gill, P. M. W., Johnson, B., Chen, W., Wong, M. W., Gonzalez, C., and Pople, J. A. (2004) Gaussian 03, revision. C.02, Gaussian, Inc., Wallingford, CT.
-
(2004)
Gaussian 03
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Montgomery Jr., J.A.7
Vreven, T.8
Kudin, K.N.9
Burant, J.C.10
Millam, J.M.11
Iyengar, S.S.12
Tomasi, J.13
Barone, V.14
Mennucci, B.15
Cossi, M.16
Scalmani, G.17
Rega, N.18
Petersson, G.A.19
Nakatsuji, H.20
Hada, M.21
Ehara, M.22
Toyota, K.23
Fukuda, R.24
Hasegawa, J.25
Ishida, M.26
Nakajima, T.27
Honda, Y.28
Kitao, O.29
Nakai, H.30
Klene, M.31
Li, X.32
Knox, J.E.33
Hratchian, H.P.34
Cross, J.B.35
Bakken, V.36
Adamo, C.37
Jaramillo, J.38
Gomperts, R.39
Stratmann, R.E.40
Yazyev, O.41
Austin, A.J.42
Cammi, R.43
Pomelli, C.44
Ochterski, J.W.45
Ayala, P.Y.46
Morokuma, K.47
Voth, G.A.48
Salvador, P.49
Dannenberg, J.J.50
Zakrzewski, V.G.51
Dapprich, S.52
Daniels, A.D.53
Strain, M.C.54
Farkas, O.55
Malick, D.K.56
Rabuck, A.D.57
Raghavachari, K.58
Foresman, J.B.59
Ortiz, J.V.60
Cui, Q.61
Baboul, A.G.62
Clifford, S.63
Cioslowski, J.64
Stefanov, B.B.65
Liu, G.66
Liashenko, A.67
Piskorz, P.68
Komaromi, L.69
Martin, R.L.70
Fox, D.J.71
Keith, T.72
Al-Laham, M.A.73
Peng, C.Y.74
Nanayakkara, A.75
Challacombe, M.76
Gill, P.M.W.77
Johnson, B.78
Chen, W.79
Wong, M.W.80
Gonzalez, C.81
Pople, J.A.82
more..
-
54
-
-
0035176391
-
Thermodynamics of interactions of urea and guanidinium salts with protein surface: Relationship between solute effects on protein processes and changes in water-accessible surface area
-
Courtenay, E. S., Capp, M. W., and Record, M. T., Jr. (2001) Thermodynamics of interactions of urea and guanidinium salts with protein surface: Relationship between solute effects on protein processes and changes in water-accessible surface area, Protein Sci. 10, 2485-2497.
-
(2001)
Protein Sci.
, vol.10
, pp. 2485-2497
-
-
Courtenay, E.S.1
Capp, M.W.2
Record Jr., M.T.3
-
55
-
-
37549043949
-
Interaction of urea with amino acids: Implications for urea-induced protein denaturation
-
Stumpe, M. C., and Grubmuller, H. (2007) Interaction of urea with amino acids: Implications for urea-induced protein denaturation. J. Am. Chem. Soc. 129, 16126-16131.
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 16126-16131
-
-
Stumpe, M.C.1
Grubmuller, H.2
-
56
-
-
2942718829
-
A combined simulation and Kirkwood-Buff approach to quantify cosolvent effects on the conformational, preferences of peptides in solution
-
Aburi, M., and Smith, P. E. (2004) A combined simulation and Kirkwood-Buff approach to quantify cosolvent effects on the conformational, preferences of peptides in solution. J. Phys. Chem. B 108, 7382-7388.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 7382-7388
-
-
Aburi, M.1
Smith, P.E.2
-
57
-
-
33947485233
-
Nonpolar group participation in the denaturation of proteins by urea and guanidinium salts. Model compound studies
-
Wetlaufer, D. B., Malik, S. K., Stoller, L., and Coffin, R. L. (1964) Nonpolar group participation in the denaturation of proteins by urea and guanidinium salts. Model compound studies. J. Am. Chem. Soc. 86, 508-514.
-
(1964)
J. Am. Chem. Soc.
, vol.86
, pp. 508-514
-
-
Wetlaufer, D.B.1
Malik, S.K.2
Stoller, L.3
Coffin, R.L.4
-
58
-
-
0035809977
-
On the solubility of aliphatic hydrocarbons in 7 M aqueous urea
-
DOI 10.1021/jp004335e
-
58. Graziano, G. (2001) On the solubility of aliphatic hydrocarbons in 7 M! aqueous urea. J. Phys. Chem. B 105, 2632-2637. (Pubitemid 35372844)
-
(2001)
Journal of Physical Chemistry B
, vol.105
, Issue.13
, pp. 2632-2637
-
-
Graziano, G.1
-
59
-
-
45749111742
-
Assessing the interaction of urea and protein-stabilizing osmolytes with the nonpolar surface of hydroxypropylcellulose
-
DOI 10.1021/bi800117f
-
59. Stanley, C., and Rau, D. C. (2008) Assessing the interaction of urea and protein-stabilizing osmolytes with the nonpolar surface of hydroxypropylcellulose. Biochemistry 47, 6711-6718. (Pubitemid 351874298)
-
(2008)
Biochemistry
, vol.47
, Issue.25
, pp. 6711-6718
-
-
Stanley, C.1
Rau, D.C.2
-
60
-
-
0029878720
-
Vmd: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996) Vmd: Visual molecular dynamics. J. Mol. Graphics 14, 33-38.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
|