Photonic Crystal Surfaces as a General Purpose Platform for Label-Free and Fluorescent Assays

JALA - Journal of the Association for Laboratory Automation

Volumn 15, Issue 2, 2010, Pages 120-135

  Cunningham, Brian T ^a  

^a United States of America   (United States)

Author keywords

biosensors; fluorescence; GPCR assays; high throughput screening; label free detection

Indexed keywords

BIOLOGICAL APPLICATIONS; BIOSENSING; CELL-BASED ASSAYS; DETECTION SENSITIVITY; FLUORESCENCE ASSAY; FLUORESCENT ASSAYS; GENE EXPRESSION ANALYSIS; GENERAL PURPOSE; HIGH RESOLUTION; HIGH SENSITIVITY; HIGH-THROUGHPUT SCREENING; INTEGRIN ACTIVATION; LABEL FREE; LABEL-FREE DETECTION; LARGE SURFACE AREA; MICROFLUIDIC CHANNEL; MICROPLATES; OPTICAL RESONANT; PC-BASED; PLASTIC MATERIALS; RESONANT WAVELENGTHS; SMALL MOLECULES; STANDARD FORMAT; SURFACE ENHANCED RAMAN SPECTROSCOPY; SURFACE-BASED;

ACTIVATION ANALYSIS; ASSAYS; BIOSENSORS; CELL MEMBRANES; CYTOLOGY; FLUORESCENCE; GENE EXPRESSION; LABELS; MICROCOMPUTERS; PHOTONIC CRYSTALS; RAMAN SPECTROSCOPY;

SURFACES;

BIOLOGICAL MARKER; INTEGRIN; NANOMATERIAL; PLASTIC;

ARTICLE; BIOCHEMISTRY; BIOSENSOR; CELL ASSAY; CELL MEMBRANE; CONTROLLED STUDY; CRYSTAL STRUCTURE; ELECTROMAGNETIC FIELD; EQUIPMENT DESIGN; FLUORESCENCE ANALYSIS; GENE EXPRESSION PROFILING; HIGH THROUGHPUT SCREENING; MICROARRAY ANALYSIS; MICROFLUIDIC ANALYSIS; PROTEIN ANALYSIS; RAMAN SPECTROMETRY; SENSITIVITY ANALYSIS; SURFACE PROPERTY;

EID: 77649295832     PISSN: 15355535     EISSN: 15402452     Source Type: Journal    
DOI: 10.1016/j.jala.2009.10.009     Document Type: Article

References (64)

1. Gonzalez R., Varnum S.M., and Zangar R.C. Sandwich ELISA microarrays. Generating reliable and reproducible assays for high-throughput screening. Methods in Parmacol. Toxicol (2008) 273-290
2. Gonzalez R.M., Seurynck-Servoss S.L., Crowley S.A., Brown M., Omenn G.S., Hayes D.F., and Zangar R.C. Development and validation of sandwich ELISA microarrays with minimal assay interference. J. Proteome Res 7 (2008) 2406-2414
3. Eid J., Fehr A., Gray J., Luing K., Lyle J., Otto G., Peluso P., and Rank D. Real-time DNA sequencing from single polymerase molecules. Science 323 (2009) 133-138
4. Hell S.W. Toward fluorescence nanoscopy. Nat. Biotechnol 21 (2003) 1347-1355
5. Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 (1995) 467-470
6. Lofas S. Dextran modified self-assembled monolayer surfaces for use in biointeraction analysis with surface plasmon resonance. Pure Appl. Chem 67 (1995) 829-834
7. Lofas S., Malmqvist M., Ronnberg I., Stenberg E., Liedberg B., and Lundstrom I. Bioanalysis with surface plasmon resonance. Sens. Actuators B 5 (1991) 79-84
8. Haynes C.L., Yonzon C.R., Zhang X., and Duyne R.P.V. Surface-enhanced Raman sensors: early history and the development of sensors for qualitative biowarfare agent and glucose detection. J. Raman Spectrosc 36 (2005) 471-484
9. Jeanmaire D.L., and Duyne R.P.V. Surface raman spectroelectrochemistry: Part I. Heterocyclic, aromatic, and aliphatic amines adsorbed on the anodized silver electrode. J. Electroanal. Chem 84 (1977) 1
10. Yablonovitch E. Inhibited spontaneous emission in solid-state physics and electronics. Phys. Rev. Lett 58 (1987) 2059-2062
11. Joannopoulos J.D., Meade R.D., and Winn J.N. Photonic Crystals (1995), Princeton University Press, Princeton, NJ
12. Budach W., Abel A.P., Bruno A.E., and Neuschaefer D. Planar waveguides as high-performance sensing platforms for fluorescence-based multiplexed oligonucleotide hybridization assays. Anal. Chem 71 (1999) 3347-3355
13. Mathias P.C., Ganesh N., Chan L.L., and Cunningham B.T. Combined enhanced fluorescence and label-free biomolecular detection with a photonic crystal surface. Appl. Opt 46 (2007) 2351-2360
14. Mathias P.C., Ganesh N., Zhang W., and Cunningham B.T. Graded wavelength one-dimensional photonic crystal reveals spectral characteristics of enhanced fluorescence. J. Appl. Phys 103 (2008) 094320
15. Block I.D., Ganesh N., Lu M., and Cunningham B.T. A sensitivity model for predicting photonic crystal biosensor performance. IEEE Sens. J 8 (2008) 274-280
16. Cunningham B.T., and Laing L. Label-free detection of biomolecular interactions: applications in proteomics and drug discovery. Expert Opin. Proteomics 3 (2006) 271-281
17. Cunningham B.T., Li P., Lin B., and Pepper J. Colorimetric resonant reflection as a direct biochemical assay technique. Sens. Actuators B 81 (2002) 316-328
18. Cunningham B.T., Li P., Schulz S., Lin B., Baird C., Gerstenmaier J., Genick C., Wang F., Fine E., and Laing L. Label-free assays on the BIND system. J. Biomol. Screen 9 (2004) 481-490
19. Cunningham B.T., Qiu J., Li P., Pepper J., and Hugh B. A plastic colorimetric resonant optical biosensor for multiparallel detection of label-free biochemical interactions. Sens. Actuators B 85 (2002) 219-226
20. Mathias P.C., Ganesh N., and Cunningham B.T. Application of photonic crystal enhanced fluorescence to a cytokine immunoassay. Anal. Chem 80 (2008) 9013-9020
21. Zhang W., Ganesh N., Mathias P.C., and Cunningham B.T. Enhanced fluorescence on a photonic crystal surface incorporating nanorod structures. Small 4 (2008) 2199-2203
22. Ganesh N., Zhang W., Mathias P.C., Chow E., Soares J.A.N.T., Malyarchuk V., Smith A.D., and Cunningham B.T. Enhanced fluorescence emission from quantum dots on a photonic crystal surface. Nat. Nanotechnol 2 (2007) 515-520
23. Block I.D. Photonic Crystal Enhanced Fluorescence and Label-Free Bioimaging in Electrical and Computer Engineering. Ph.D. Thesis (2009), University of Illinois at Urbana-Champaign, Urbana, IL p. 141
24. Block I.D., Mathias P.C., Ganesh N., Jones I.D., Dorvel B.R., Chaudhery V., Vodkin L., Bashir R., and Cunningham B.T. A combined enhanced-fluorescence and label-free imaging instrument. Opt. Express 17 (2009) 13222-13235
25. Ganesh N., Block I.D., Mathias P.C., Zhang W., Chow E., Malyarchuk V., and Cunningham B.T. Leaky-mode assisted fluorescence extraction: application to fluorescence enhancement biosensors. Opt. Express 16 (2008) 21626-21640
26. Lin B., Qiu J., Gerstenmeier J., Li P., Pien H., Pepper J., and Cunningham B. A label-free optical technique for detecting small molecule interactions. Biosens. Bioelectron 17 (2002) 827-834
27. Cunningham B.T., and Laing L. Microplate-based, label-free detection of biomolecular interactions: applications in proteomics. Expert Rev. Proteomics 3 (2006) 271-281
28. Chan L.L., Pineda M.F., Heeres J., Hergenrother P.J., and Cunningham B.T. General method for discovering inhibitors of protein-DNA interactions using photonic crystal biosensors. ACS Chem. Bio 3 (2008) 437-448
29. Hergenrother P.J. Obtaining and screening compound collections: a user's guide and a call to chemists. Curr. Opin. Chem. Biol 10 (2006) 213-218
30. Lin B., Li P.Y., and Cunningham B.T. A label-free biosensor-based cell attachment assay for characterization of cell surface molecules. Sens. Actuators B 114 (2006) 559-561
31. Li P., Lin B., Gerstenmaier J., and Cunningham B.T. A new method for label-free imaging of biomolecular interactions. Sens. Actuators B 99 (2004) 6-13
32. Chan L.L., Gosangari S., Watkin K., and Cunningham B.T. A label-free photonic crystal biosensor imaging method for detection of cancer cell cytotoxicity and proliferation. Apoptosis 12 (2007) 1061-1068
33. Chan L.L., Gosangari S., Watkin K., and Cunningham B.T. Label-free imaging of cancer cells using photonic crystal biosensors and application to cytotoxicity screening of a natural compound library. Sens. Actuators B 132 (2008) 418-425
34. Chigaev A., Waller A., Amit O., and Sklar L.A. Ga-coupled receptor signaling actively down-regulates a4b1-integrin affinity: a possible mechanism for cell de-adhesion. BMC Immunol 9 (2008)
35. Kingsmore S.F. Multiplexed protein measurement: technologies and applications of protein and antibody arrays. Nat. Rev. Drug Discov 5 (2006) 310-321
36. Woodbury R.L., Varnum S.M., and Zangar R.C. Elevated HGF levels in sera from breast cancer patients detected using a protein microarray ELISA. J. Proteome Res 1 (2002) 233-237
37. Li Y., and Reichert W.M. Adapting cDNA microarray format to cytokine detection protein arrays. Langmuir 19 (2003) 1557-1566
38. Saviranta P., Okon R., Brinker A., Warashina M., Eppinger J., and Geierstanger B.H. Evaluating sandwich immunoassays in microarray format in terms of the ambient analyte regime. Clin. Chem 50 (2004) 1907-1920
39. Kusnezow W., Syagalio Y.V., Ruffer S., Baudenstie N., Gauer C., Hoheisel J.D., Wild D., and Goychuk I. Optimal design of microarray immunoassays to compensate for kinetic limitations. Mol. Cell. Proteomics 5 (2006) 1681-1696
40. Ganesh N., Mathias P.C., Zhang W., and Cunningham B.T. Distance dependence of fluorescence enhancement from photonic crystal surfaces. J. Appl. Phys 103 (2008) 083104
41. Carrigan S.D., Scott G., and Tabrizian M. Toward resolving the challenges of sepsis diagnosis. Clin. Chem 50 (2004) 1301-1314
42. Balc C., Sungurtekin H., Gurses E., Sungurtekin U., and Kaptanoglu B. Usefulness of procalcitonin for diagnosis of sepsis in the intensive care unit. Crit. Care 7 (2002) 85-90
43. Aziz N., Nishanian P., and Fahey J.L. Levels of cytokines and immune activiation markers in plasma in human immunodeficiency virus infection: quality control procedures. Clin. Diagn. Lab. Immunol 5 (1998) 755-761
44. Scala E., Pallotta S., Frezzolini A., Abeni D., Barbieri C., Sampogna F., Pita O.D., Puddu P., Paganelli R., and Russo G. Cytokine and chemokine levels in systemic sclerosis: relationship with cutaneous and internal organ involvement. Clin. Exp. Immunol 138 (2004) 540-546
45. Rothenhausler B., and Knoll W. Surface-plasmon microscopy. Nature 332 (1988) 615-617
46. Giebel F., Bechinger C., Herminghaus S., Riedel M., Leiderer P., Weiland U., and Bastmeyer M. Imaging of cell/substrate contacts of living cells with surface plasmon resonance microscopy. Biophys. J 76 (1999) 509-516
47. Zhang W., Shmulevich I., and Astola J. Microarray Quality Control (2004), Wiley, Hoboken, NJ
48. Dorvel Jr. B.B.R., Block I.D., Mathias P.C., Clare S.E., Bergstrom D.E., Cunningham B.T., and Bashir R. Vapor phase deposition of monofunctional alkoxysilanes for sub-nanometer level biointerfacing on oxide surfaces. Adv. Funct. Mater (2010) In Press
49. Zhao Y.-P., Chaney S.B., Shanmukh S., and Dluhy R.A. Polarized surface enhanced Raman and absorbance spectra of aligned silver nanorod arrays. J. Phys. Chem. B 110 (2006) 3155-3157
50. Ueno K., Juodkazis S., Mizeikis V., Sasaki K., and Misawa H. Clusters of closely spaced gold nanoparticles as a source of two photon photoluminescence at visible wavelengths. Adv. Mater 20 (2008) 26-30
51. Narayanaswamy R., and Wolfbeis O.S. Optical Sensors: Industrial, Environmental and Diagnostic Applications (2004), Springer, Berlin, Germany & New York, NY
52. Cunningham A.J. Introduction to Bioanalytical Sensors (1998), Wiley, New York, NY
53. Jonsson U., Fagerstam L., Ivarsson B., Johnsson B., Karlsson R., Lundh K., Lofas S., Persson B., Roos H., Ronnberg I., Sjolander S., Stenberg E., Stahlberg R., Urbaniczky C., Ostlin H., and Malmqvist M. Real-time biospecific interaction analysis using surface-plasmon resonance and a sensor chip technology. Biotechniques 11 (1991) 620-627
54. White I.M., and Fan X.D. On the performance quantification of resonant refractive index sensors. Opt. Express 16 (2008) 1020-1028
55. Yalcin A., Popat K.C., Aldridge J.C., Desai T.A., Hryniewicz J., Chbouki N., Little B.E., King O., Van V., Chu S., Gill D., Anthes-Washburn M., and Unlu M.S. Optical sensing of biomolecules using microring resonators. IEEE J. Sel. Top. Quan. Electron 12 (2006) 148-155
56. Chao C.Y., Fung W., and Guo L.J. Polymer microring resonators for biochemical sensing applications. IEEE J. Sel. Top. Quan. Electron 12 (2006) 134-142
57. Hanumegowda N.M., Stica C.J., Patel B.C., White I., and Fan X.D. Refractometric sensors based on microsphere resonators. Appl. Phys. Lett 87 (2005)
58. Vollmer F., Braun D., Libchaber A., Khoshsima M., Teraoka I., and Arnold S. Protein detection by optical shift of a resonant microcavity. Appl. Phys. Lett 80 (2002) 4057-4059
59. White I.M., Oveys H., and Fan X.D. Liquid-core optical ring-resonator sensors. Opt. Lett 31 (2006) 1319-1321
60. Lu M., Choi S., Wagner C.J., Eden J.G., and Cunningham B.T. Label free biosensor incorporating a replica-molded, vertically emitting distributed feedback laser. Appl. Phys. Lett 92 (2008)
61. Fang W., Buchholz D.B., Bailey R.C., Hupp J.T., Chang R.P.H., and Cao H. Detection of chemical species using ultraviolet microdisk lasers. Appl. Phys. Lett 85 (2004) 3666-3668
62. Loncar M., Scherer A., and Qiu Y.M. Photonic crystal laser sources for chemical detection. Appl. Phys. Lett 82 (2003) 4648-4650
63. Rogers J.A., Meier M., Dodabalapur A., Laskowski E.J., and Cappuzzo M.A. Distributed feedback ridge waveguide lasers fabricated by nanoscale printing and molding on nonplanar substrates. Appl. Phys. Lett 74 (1999) 3257-3259
64. Lu M., Choi S.S., Irfan U., and Cunningham B.T. Plastic distributed feedback laser biosensor. Appl. Phys. Lett 93 (2008) 111113