Integrating the processes in the evolutionary system of domestication

Journal of Experimental Botany

Volumn 61, Issue 4, 2010, Pages 935-944

  Allaby, Robin ^a  

^a UNIVERSITY OF WARWICK   (United Kingdom)

Author keywords

Protracted transition; Rapid transition; Syndrome

Indexed keywords

ARCHEOLOGY; BIOLOGICAL MODEL; EVOLUTION; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; PLANT; REVIEW;

ARCHAEOLOGY; EVOLUTION; GENETIC VARIATION; MODELS, GENETIC; PLANTS; SELECTION, GENETIC;

EID: 77649249553     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erp382     Document Type: Review

References (54)

1. Allaby RG. 2008. The rise of plant domestication: life in the slow lane. Biologist 55, 94-99.
2. Allaby RG, Fuller DQ, Brown TA. 2008. The genetic expectations of a protracted model for the origins of domesticated crops. Proceedings of the National Academy of Sciences, USA 105, 13982-13986.
3. Allaby RG, Peterson G, Merriwether DA, Fu Y-B. 2005. Evidence of the domestication history of flax (Linum usitatissimum L.) from genetic diversity of the sad2 locus. Theoretical and Applied Genetics 112, 58-65.
4. Azguvel P, Komatsuda T. 2007. A phylogenetic analysis based on nucleotide sequence of a marker linked to the brittle rachis locus indicates a diphyletic origin of barley. Annals of Botany 100, 1009-1015.
5. Badr A, Müller K, Schäfer-Pregl R, El Rabey H, Effgen S, Ibrahim HH, Pozzi C, Rohde W, Salamini F. 2000. On the origin and domestication history of barley (Hordeum vulgare). Molecular Biology and Evolution 17, 499-510.
6. Beaumont MA, Zhang W, Balding DJ. 2002. Approximate Bayesian Computation in population genetics. Genetics 162, 2025-2035.
7. Blumer MA. 1992. Independent interventionism and recent genetic evidence on plant domestication. Economic Botany 46, 98-111.
8. Brown TA, Lindsay S, Allaby RG. 2006. Using modern landraces of wheat to study the origins of European agriculture. In: Motley TJ, Zeregra N, Cross H, eds. Darwin's harvest. New York: Columbia University Press, 197-212.
9. Darwin C. 1859. Variation under domestication. In: Origin of species. London: Murray, 7-43.
10. Darwin C. 1868. Variation of animals and plants under domestication, 2 vols. London: Murray.
11. Flannery K. 1969. Origins and ecological effects of early domestication in Iran and the Near East. In: Ucko P, Dimbleby G, eds. The domestication and exploitation of plants and animals. London: Duckworth, 73-100.
12. Fuller D. 2007. Contrasting patterns in crop domestication and domestiation rates: recent archaeobotanical insights from the old world. Annals of Botany 100, 903-924.
13. Fuller DQ, Allaby RG, Stevens C. 2009a. Domestication as innovation: the entanglement of techniques, technology and chance in the domestication of cereal crops. World Archaeology in press.
14. Fuller DQ, Qin L, Zheng Y, Zhao Z, Chen X, Hosoya LA, Sun G-P. 2009b. The domestication process and domestication rate in rice: spikelet bases from the Lower Yangtze. Science 323, 1607-1610.
15. Gepts P. 2004. Crop domestication as a long term selection experiment. Plant Breeding Reviews 24(2), 1-44.
16. Harris DR. 1989. An evolutionary continuum of people-plant interaction. In: Harris DR, Hillman GC, eds. Foraging and farming: the evolution of plant exploitation. London: Unwin Hyman, 11-26.
17. Heun M, Schäfer-Pregl R, Klawan D, Castagna R, Accerbi M, Borghi B, Salamini F. 1997. Site of einkorn wheat domestication identified by DNA fingerprinting. Science 278, 1312-1314.
18. Hillman GC. 1975. The plant remains from Tell Abu Hureyra: a preliminary report. Proceedings of the Prehistorical Society 41, 70-73.
19. Hillman GC, Davies MS. 1990. Domestication rates in wild-type wheats and barley under primitive cultivation. Biological Journal of the Linnean Society 39, 39-78.
20. Jones H, Leigh F, Mackay I, Bower M, Smith L, Charles M, Jones G, Jones M, Brown T, Powell W. 2008. Population based re-sequencing reveals that the flowering time adaptation of cultivated barley originated east of the Fertile Crescent. Molecular Biology and Evolution 25, 2211-2219.
21. Kimura M, Ohta T. 1973. The age of a neutral mutant persisting in a finite population. Genetics 75, 199-212.
22. Kislev ME, Weiss E, Hartmann A. 2004. Impetus for sowing and the beginning of agriculture: ground collecting of wild cereals. Proceedings of the National Academy of Sciences, USA 101, 2692-2695.
23. Konishi S, Izawa T, Lin SY, Ebana K, Fukuta Y, Sasaki T, Yano M. 2006. A SNP caused loss of seed shattering during rice domestication. Science 312, 1392-1396.
24. Kovach MJ, Calingacion MN, Fitzgerald MA, McCouch S. 2009. The origin and evolution of fragrance in rice (Oryza sativa L.). Proceedings of the National Academy of Sciences, USA 106, 14444-14449.
25. Le Thierry D'Ennequin M, Toupance B, Godelle B, Gouyon PH. 1999. Plant domestication: a model for studying the selection of linkage. Journal of Evolutionary Biology 12, 1138-1147.
26. Li C, Zhou A, Sang T. 2006. Rice domestication by reducing shattering. Science 311, 1936-1939.
27. Lin Z, Griffith ME, Li X, Zhu Z, Tan L, Fu Y, Zhang W, Wang X, Xie D, Sun C. 2007. Origin of seed shattering in rice (Oryza sativa L.). Planta 226, 11-20.
28. Londo JP, Chiang Y-C, Hung K-H, Chiang T-Y, Schaal BA. 2006. Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cutivated rice, Oryza sativa. Proceedings of the National Academy of Sciences, USA 103, 9578-9583.
29. Marjoram P, TavaréS. 2006. Modern computational approaches for analysing molecular genetic variation data. Nature Reviews Genetics 7, 759-770.
30. Matsuoka Y, Vigouroux Y, Goodman MM, Sanchez GJ, Buckler E, Doebley J. 2002. A single domestication for maize shown by multilocus microsatellite genotyping. Proceedings of the National Academy of Sciences, USA 99, 6080-6084.
31. Molina-Cano JL, Russell JR, Moralejo MA, Escacena JL, Arias G, Powell W. 2005. Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theoretical and Applied Genetics 110, 613-619.
32. Moore AMT, Hillman GC. 1992. The Pleistocene to Holocene transition and human economy in Southwest Asia: the impact of the Younger Dryas. American Antiquity 57, 482-494.
33. Oka H-I, Morishima H. 1971. The dynamics of plant domestications: cultivation experiments with Oryza perennis and its hybrid with O. sativa. Evolution 25, 356-364.
34. Ross-Ibarra J, Tenaillon M, Gaut B. 2009. Historical divergence and gene flow in the genus Zea. Genetics 181, 1399-1413.
35. Shomura A, Izawa Ebana K, Ebitani T, Kanegae H, Konishi S, Yano M. 2008. Deletion in a gene associated with grain size increased yields during rice domestication. Nature Genetics 40, 1023-1028.
36. Stiner M. 2001. Thirty years on the 'Broad Spectrum Revolution' and paleolithic demography. Proceedings of the National Academy of Sciences, USA 98, 6993-6996.
37. Sweeney MT, Thompson MJ, Cho YG, Park YJ, Williamson SH, Bustamante CD, McCouch S. 2007. Global dissemination of a single mutation conferring white pericarp in rice. PLos Genetics 3, 1418-1424.
38. Takahashi R. 1972. Non-brittle rachis 1 and non-brittle rachis 2. Barley Genetics Newsletter 2, 181-182.
39. Tanno KI, Willcox G. 2006. How fast was wild wheat domesticated? Science 311, 1886.
40. Weiss E, Kislev ME, Hartmann A. 2006. Autonomous cultivation before domestication. Science 312, 1608-1610.
41. Weiss E, Wetterstrom W, Nadel D, Bar-Yosef O. 2004. The broad spectrum revisited: evidence from plant remains. Proceedings of the National Academy of Sciences, USA 101, 9551-9555.
42. Willcox G. 2004. Measuring grain size and identifying Near Eastern cereal domestication: evidence from the Euphrates valley. Journal of Archaeological Science 31, 145-150.
43. Willcox G. 2005. The distribution, natural habitats and availability of wild cereals in relation to their domestication in the Near East: multiple events, multiple centres. Vegetation History and Archaeobotany 14, 534-541.
44. Willcox G, Buxo R, Herveux L. 2009. Late Pleistocene and Early Holocene climate and the beginnings of cultivation in northern Syria. Holocene 19, 151-158.
45. Willcox G, Fornite S, Herveux L. 2008. Early Holocene cultivation before domestication in northern Syria. Vegetation History and Archaeobotany 17, 313-325.
46. Wright HE. 1976. The environmental setting for plant domestication in the Near East. Science 194, 385-389.
47. Yamanaka S, Nakamura I, Watanabe KN, Sato Y-I. 2004. Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice. Theoretical and Applied Genetics 108, 1200-1204.
48. Yan L, Fu D, Li C, Blechl A, Tranquilli G, Bonafede M, Sanchez A, Valarik M, Yasuda S, Dubcovsky J. 2006. The wheat and barley vernalization gene VRN3 is an orthologue of FT. Proceedings of the National Academy of Sciences, USA 103, 19581-19586.
49. Yan L, Helguera M, Kato K, Fukuyama S, Sherman J, Dubcovsky J. 2004a. Allelic variation at the VRN-1 promoter region in polyploidy wheat. Theoretical and Applied Genetics 109, 1677-1686.
50. Yan L, Loukoianov A, Blechl A, Tranquilli G, Ramakrishna W, San Miguel P, Bennetzen JL, Echenique V, Dubcovsky J. 2004b The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science 303, 1640-1644.
51. Yan L, Loukoianov A, Tranquilli G, Helguera M, Fahima T, Dubcovsky J. 2003. Positional cloning of the wheat vernalization gene VRN1. Proceedings of the National Academy of Sciences, USA 100, 6263-6268.
52. Zhu Q, Zheng X, Luo J, Gaut BS, Ge S. 2007. Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestciation of rice. Molecular Biology and Evolution 24, 875-888. (Pubitemid 46355812)
53. Zohary D. 1999. Monophyletic vs. polyphyletic origin of crops found in the Near East. Genetic Resources and Crop Evolution 46, 133-142.
54. Zohary D, Hopf M. 2000. Domestication of plants in the old world, 3rd edn. Oxford: Oxford University Press.